basic::options::OptionKeys::hotspot Namespace Reference

Variables
BooleanOptionKey const	hotspot
BooleanOptionKey const	allow_gly
BooleanOptionKey const	allow_proline
BooleanOptionKey const	benchmark
StringVectorOptionKey const	residue
FileOptionKey const	hashfile
FileOptionKey const	target
IntegerOptionKey const	target_res
RealOptionKey const	target_dist
FileOptionKey const	density
FileOptionKey const	weighted_density
FileOptionKey const	rms_target
FileOptionKey const	rms_hotspot
IntegerOptionKey const	rms_hotspot_res
BooleanOptionKey const	rescore
RealOptionKey const	threshold
BooleanOptionKey const	sc_only
BooleanOptionKey const	fxnal_group
BooleanOptionKey const	cluster
BooleanOptionKey const	colonyE
IntegerOptionKey const	length
BooleanOptionKey const	envhb
RealOptionKey const	angle
IntegerOptionKey const	angle_res
IntegerOptionKey const	batch_size

Variable Documentation

allow_gly

BooleanOptionKey const basic::options::OptionKeys::hotspot::allow_gly

extern

Referenced by designloop().

allow_proline

BooleanOptionKey const basic::options::OptionKeys::hotspot::allow_proline

extern

Referenced by SetupHotspotMover::generate_csts().

angle

RealOptionKey const basic::options::OptionKeys::hotspot::angle

extern

Referenced by pseudoTrace::add_to_C(), pseudoTrace::add_to_N(), numeric::xyzTransform< T >::align(), numeric::angle_degrees(), numeric::angle_radians(), ZincMatchFilter::apply(), SampleTiltProtocol::apply(), backbone_sampling(), betapeptide_setomega(), betapeptide_setphi(), betapeptide_setpsi(), betapeptide_settheta(), cone_cen_nc_calculator(), cone_FA_nc_anyatom_calculator(), cone_FA_nc_calculator(), create_random_angle_from_range_list(), numeric::conversions::degrees(), numeric::dihedral(), numeric::dihedral_degrees(), numeric::dihedral_degrees_double(), numeric::dihedral_double(), numeric::dihedral_radians(), numeric::dihedral_radians_double(), files_for_openMM_test(), numeric::conversions::from_degrees(), numeric::conversions::from_radians(), MyRT::from_rot(), gaussian_angle_move(), generate_from_point(), CrystFFTDock::get_transform_distance(), zinc2_homodimer_setup::gridsearch_symmetric_alignments(), id2torsion(), initialize_from_pdb(), latticeHit::latticeHit(), main(), minimize_test(), numeric::nearest_angle(), numeric::nearest_angle_degrees(), numeric::nearest_angle_radians(), numeric::nonnegative_principal_angle(), numeric::nonnegative_principal_angle_degrees(), numeric::nonnegative_principal_angle_radians(), BreadthMover::omega_apply(), numeric::operator<<(), peptide_plane_test(), numeric::principal_angle(), numeric::principal_angle_degrees(), numeric::principal_angle_radians(), printBondAngles(), numeric::proj_angl(), numeric::conversions::radians(), random_angle(), random_delta(), reroot_restype(), numeric::xyzTransform< T >::rotation_angle(), numeric::xyzTransform< T >::rotation_angle_degrees(), numeric::xyzTransform< T >::rotation_axis(), run_diiron_glu(), run_m8(), run_tyr_his(), run_zn2his(), numeric::HomogeneousTransform< T >::set_xaxis_rotation_deg(), numeric::HomogeneousTransform< T >::set_xaxis_rotation_rad(), numeric::HomogeneousTransform< T >::set_yaxis_rotation_deg(), numeric::HomogeneousTransform< T >::set_yaxis_rotation_rad(), numeric::HomogeneousTransform< T >::set_zaxis_rotation_deg(), numeric::HomogeneousTransform< T >::set_zaxis_rotation_rad(), setup_transform_mover(), numeric::kinematic_closure::test_bondangle(), numeric::conversions::to_degrees(), numeric::conversions::to_radians(), numeric::urs_R2ang(), numeric::wrap_180(), numeric::wrap_2pi(), numeric::wrap_360(), and numeric::wrap_pi().

angle_res

IntegerOptionKey const basic::options::OptionKeys::hotspot::angle_res

extern

batch_size

IntegerOptionKey const basic::options::OptionKeys::hotspot::batch_size

extern

benchmark

BooleanOptionKey const basic::options::OptionKeys::hotspot::benchmark

extern

Referenced by main().

cluster

BooleanOptionKey const basic::options::OptionKeys::hotspot::cluster

extern

colonyE

BooleanOptionKey const basic::options::OptionKeys::hotspot::colonyE

extern

density

FileOptionKey const basic::options::OptionKeys::hotspot::density

extern

envhb

BooleanOptionKey const basic::options::OptionKeys::hotspot::envhb

extern

fxnal_group

BooleanOptionKey const basic::options::OptionKeys::hotspot::fxnal_group

extern

Referenced by main().

hashfile

FileOptionKey const basic::options::OptionKeys::hotspot::hashfile

extern

hotspot

BooleanOptionKey const basic::options::OptionKeys::hotspot::hotspot

extern

length

IntegerOptionKey const basic::options::OptionKeys::hotspot::length

extern

rescore

BooleanOptionKey const basic::options::OptionKeys::hotspot::rescore

extern

residue

StringVectorOptionKey const basic::options::OptionKeys::hotspot::residue

extern

rms_hotspot

FileOptionKey const basic::options::OptionKeys::hotspot::rms_hotspot

extern

rms_hotspot_res

IntegerOptionKey const basic::options::OptionKeys::hotspot::rms_hotspot_res

extern

rms_target

FileOptionKey const basic::options::OptionKeys::hotspot::rms_target

extern

sc_only

BooleanOptionKey const basic::options::OptionKeys::hotspot::sc_only

extern

target

FileOptionKey const basic::options::OptionKeys::hotspot::target

extern

Referenced by align_poses(), utility::graph::RingEdgeAnnotationVisitor< Graph, EdgeMap, PathMap >::back_edge(), Bola::Bola(), utility::graph::breadth_first_visit_prune(), cone_cen_nc_calculator(), utility::graph::depth_first_visit_sort_impl(), find_nearest_res(), numeric::fourier::SHT::forwardS2(), utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >::gray_target(), HubDenovo::HubDenovo(), utility::graph::RingDetection< Graph >::Initialize(), utility::graph::RingDetection< Graph >::LengthOfSmallestCycleWithVertex(), main(), manual_copy(), RerootEdgeSorter::operator()(), print_graph(), DockGlycansProtocol::ramp_score_weight(), register_options(), HubDenovo::run(), sphere_cen_nc_calculator(), svm_cross_validation(), PathFinder::tree_edge(), utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >::tree_edge(), RerootRestypeVisitor::tree_edge(), and utility::graph::RingEdgeAnnotationVisitor< Graph, EdgeMap, PathMap >::tree_edge().

target_dist

RealOptionKey const basic::options::OptionKeys::hotspot::target_dist

extern

target_res

IntegerOptionKey const basic::options::OptionKeys::hotspot::target_res

extern

Referenced by build_bb_independent_rotamers().

threshold

RealOptionKey const basic::options::OptionKeys::hotspot::threshold

extern

weighted_density

FileOptionKey const basic::options::OptionKeys::hotspot::weighted_density

extern