basic::options::OptionKeys::corrections::score Namespace Reference

Variables
BooleanOptionKey const	score
BooleanOptionKey const	bbdep_omega
BooleanOptionKey const	bbdep_bond_params
BooleanOptionKey const	bbdep_bond_devs
BooleanOptionKey const	fa_dun_canonicals_use_voronoi
BooleanOptionKey const	fa_dun_noncanonicals_use_voronoi
BooleanOptionKey const	fa_dun_correct_rotamer_well_order
BooleanOptionKey const	fa_dun_correct_achiral_peptoid_libraries
BooleanOptionKey const	no_his_his_pairE
BooleanOptionKey const	no_his_DE_pairE
StringOptionKey const	p_aa_pp
BooleanOptionKey const	p_aa_pp_nogridshift
BooleanOptionKey const	rama_not_squared
FileOptionKey const	rama_map
FileOptionKey const	rama_pp_map
FileOptionKey const	rama_map_average_L_flat
FileOptionKey const	rama_map_sym_average_L_flat
FileOptionKey const	rama_map_sym_gly_flat
FileOptionKey const	rama_map_sym_pro_flat
FileOptionKey const	rama_map_average_L_flat_stringent
FileOptionKey const	rama_map_sym_average_L_flat_stringent
FileOptionKey const	rama_map_sym_gly_flat_stringent
FileOptionKey const	rama_map_sym_pro_flat_stringent
BooleanOptionKey const	rama_prepro_steep
BooleanOptionKey const	rama_prepro_nobidentate
BooleanOptionKey const	cenrot
BooleanOptionKey const	dun10
StringOptionKey const	dun10_dir
StringOptionKey const	dun02_file
StringOptionKey const	ch_o_bond_potential
RealOptionKey const	lj_hbond_hdis
RealOptionKey const	lj_hbond_OH_donor_dis
BooleanOptionKey const	score12prime
RealOptionKey const	hbond_energy_shift
RealOptionKey const	hb_sp2_BAH180_rise
RealOptionKey const	hb_sp2_outer_width
BooleanOptionKey const	hb_sp2_chipen
BooleanOptionKey const	hbond_measure_sp3acc_BAH_from_hvy
BooleanOptionKey const	hb_fade_energy
BooleanOptionKey const	hb_exclude_ether_oxygens
BooleanOptionKey const	hb_cen_soft
BooleanOptionKey const	use_bicubic_interpolation
BooleanOptionKey const	dun_normsd
BooleanOptionKey const	dun_entropy_correction
BooleanOptionKey const	no_autogen_cart_improper
RealOptionKey const	gridscore_outbox_penalty_weight

Variable Documentation

bbdep_bond_devs

BooleanOptionKey const basic::options::OptionKeys::corrections::score::bbdep_bond_devs

extern

bbdep_bond_params

BooleanOptionKey const basic::options::OptionKeys::corrections::score::bbdep_bond_params

extern

bbdep_omega

BooleanOptionKey const basic::options::OptionKeys::corrections::score::bbdep_omega

extern

cenrot

BooleanOptionKey const basic::options::OptionKeys::corrections::score::cenrot

extern

Referenced by my_main().

ch_o_bond_potential

StringOptionKey const basic::options::OptionKeys::corrections::score::ch_o_bond_potential

extern

dun02_file

StringOptionKey const basic::options::OptionKeys::corrections::score::dun02_file

extern

Referenced by validate_dunbrack_binaries().

dun10

BooleanOptionKey const basic::options::OptionKeys::corrections::score::dun10

extern

Referenced by validate_dunbrack_binaries().

dun10_dir

StringOptionKey const basic::options::OptionKeys::corrections::score::dun10_dir

extern

Referenced by validate_dunbrack_binaries().

dun_entropy_correction

BooleanOptionKey const basic::options::OptionKeys::corrections::score::dun_entropy_correction

extern

Referenced by get_rsrpl().

dun_normsd

BooleanOptionKey const basic::options::OptionKeys::corrections::score::dun_normsd

extern

fa_dun_canonicals_use_voronoi

BooleanOptionKey const basic::options::OptionKeys::corrections::score::fa_dun_canonicals_use_voronoi

extern

fa_dun_correct_achiral_peptoid_libraries

BooleanOptionKey const basic::options::OptionKeys::corrections::score::fa_dun_correct_achiral_peptoid_libraries

extern

fa_dun_correct_rotamer_well_order

BooleanOptionKey const basic::options::OptionKeys::corrections::score::fa_dun_correct_rotamer_well_order

extern

fa_dun_noncanonicals_use_voronoi

BooleanOptionKey const basic::options::OptionKeys::corrections::score::fa_dun_noncanonicals_use_voronoi

extern

gridscore_outbox_penalty_weight

RealOptionKey const basic::options::OptionKeys::corrections::score::gridscore_outbox_penalty_weight

extern

hb_cen_soft

BooleanOptionKey const basic::options::OptionKeys::corrections::score::hb_cen_soft

extern

hb_exclude_ether_oxygens

BooleanOptionKey const basic::options::OptionKeys::corrections::score::hb_exclude_ether_oxygens

extern

hb_fade_energy

BooleanOptionKey const basic::options::OptionKeys::corrections::score::hb_fade_energy

extern

hb_sp2_BAH180_rise

RealOptionKey const basic::options::OptionKeys::corrections::score::hb_sp2_BAH180_rise

extern

hb_sp2_chipen

BooleanOptionKey const basic::options::OptionKeys::corrections::score::hb_sp2_chipen

extern

hb_sp2_outer_width

RealOptionKey const basic::options::OptionKeys::corrections::score::hb_sp2_outer_width

extern

hbond_energy_shift

RealOptionKey const basic::options::OptionKeys::corrections::score::hbond_energy_shift

extern

hbond_measure_sp3acc_BAH_from_hvy

BooleanOptionKey const basic::options::OptionKeys::corrections::score::hbond_measure_sp3acc_BAH_from_hvy

extern

lj_hbond_hdis

RealOptionKey const basic::options::OptionKeys::corrections::score::lj_hbond_hdis

extern

lj_hbond_OH_donor_dis

RealOptionKey const basic::options::OptionKeys::corrections::score::lj_hbond_OH_donor_dis

extern

no_autogen_cart_improper

BooleanOptionKey const basic::options::OptionKeys::corrections::score::no_autogen_cart_improper

extern

no_his_DE_pairE

BooleanOptionKey const basic::options::OptionKeys::corrections::score::no_his_DE_pairE

extern

no_his_his_pairE

BooleanOptionKey const basic::options::OptionKeys::corrections::score::no_his_his_pairE

extern

p_aa_pp

StringOptionKey const basic::options::OptionKeys::corrections::score::p_aa_pp

extern

Referenced by CustomMover::apply(), HolesTrainingDataMover::apply(), SSM_energies::apply(), myspace::DataClass::DataClass(), initialize_free_and_fixed(), main(), pack_rotamers_test(), print_energies(), process_file_list(), report(), scan_Evalue(), FastRelaxPerformanceBenchmark::setup_for_sc12he(), InteractionGraphPerformanceBenchmark::setup_for_sc12he(), FastRelaxPerformanceBenchmark::setup_for_sc12sp2(), InteractionGraphPerformanceBenchmark::setup_for_sc12sp2(), FastRelaxPerformanceBenchmark::setup_for_score12(), InteractionGraphPerformanceBenchmark::setup_for_score12(), FastRelaxPerformanceBenchmark::setup_for_sp2hecart(), InteractionGraphPerformanceBenchmark::setup_for_sp2hecart(), simple_opte_test(), and SSM_energies::SSM_energies().

p_aa_pp_nogridshift

BooleanOptionKey const basic::options::OptionKeys::corrections::score::p_aa_pp_nogridshift

extern

rama_map

FileOptionKey const basic::options::OptionKeys::corrections::score::rama_map

extern

rama_map_average_L_flat

FileOptionKey const basic::options::OptionKeys::corrections::score::rama_map_average_L_flat

extern

rama_map_average_L_flat_stringent

FileOptionKey const basic::options::OptionKeys::corrections::score::rama_map_average_L_flat_stringent

extern

rama_map_sym_average_L_flat

FileOptionKey const basic::options::OptionKeys::corrections::score::rama_map_sym_average_L_flat

extern

rama_map_sym_average_L_flat_stringent

FileOptionKey const basic::options::OptionKeys::corrections::score::rama_map_sym_average_L_flat_stringent

extern

rama_map_sym_gly_flat

FileOptionKey const basic::options::OptionKeys::corrections::score::rama_map_sym_gly_flat

extern

rama_map_sym_gly_flat_stringent

FileOptionKey const basic::options::OptionKeys::corrections::score::rama_map_sym_gly_flat_stringent

extern

rama_map_sym_pro_flat

FileOptionKey const basic::options::OptionKeys::corrections::score::rama_map_sym_pro_flat

extern

rama_map_sym_pro_flat_stringent

FileOptionKey const basic::options::OptionKeys::corrections::score::rama_map_sym_pro_flat_stringent

extern

rama_not_squared

BooleanOptionKey const basic::options::OptionKeys::corrections::score::rama_not_squared

extern

rama_pp_map

FileOptionKey const basic::options::OptionKeys::corrections::score::rama_pp_map

extern

Referenced by correct_rama().

rama_prepro_nobidentate

BooleanOptionKey const basic::options::OptionKeys::corrections::score::rama_prepro_nobidentate

extern

rama_prepro_steep

BooleanOptionKey const basic::options::OptionKeys::corrections::score::rama_prepro_steep

extern

score

BooleanOptionKey const basic::options::OptionKeys::corrections::score::score

extern

score12prime

BooleanOptionKey const basic::options::OptionKeys::corrections::score::score12prime

extern

use_bicubic_interpolation

BooleanOptionKey const basic::options::OptionKeys::corrections::score::use_bicubic_interpolation

extern

Referenced by get_rsrpl().