basic::options::OptionKeys::stepwise::protein Namespace Reference

Variables
BooleanOptionKey const	protein
BooleanOptionKey const	global_optimize
BooleanOptionKey const	disable_sampling_of_loop_takeoff
BooleanOptionKey const	sample_beta
BooleanOptionKey const	ghost_loops
BooleanOptionKey const	centroid_screen
RealOptionKey const	centroid_score_diff_cut
StringOptionKey const	centroid_weights
RealOptionKey const	score_diff_cut
BooleanOptionKey const	filter_native_big_bins
BooleanOptionKey const	cluster_by_all_atom_rmsd
BooleanOptionKey const	centroid_output
IntegerOptionKey const	n_sample
IntegerOptionKey const	nstruct_centroid
BooleanOptionKey const	ccd_close
IntegerVectorOptionKey const	bridge_res
BooleanOptionKey const	cart_min
BooleanOptionKey const	move_jumps_between_chains
BooleanOptionKey const	use_packer_instead_of_rotamer_trials
BooleanOptionKey const	expand_loop_takeoff
BooleanOptionKey const	skip_coord_constraints
BooleanOptionKey const	allow_virtual_side_chains
BooleanOptionKey const	protein_prepack
StringOptionKey const	disulfide_file

Variable Documentation

allow_virtual_side_chains

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::allow_virtual_side_chains

extern

Referenced by main(), and rebuild_test().

bridge_res

IntegerVectorOptionKey const basic::options::OptionKeys::stepwise::protein::bridge_res

extern

Referenced by main(), and rebuild_test().

cart_min

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::cart_min

extern

Referenced by erraser_monte_carlo(), and main().

ccd_close

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::ccd_close

extern

Referenced by main().

centroid_output

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::centroid_output

extern

Referenced by main().

centroid_score_diff_cut

RealOptionKey const basic::options::OptionKeys::stepwise::protein::centroid_score_diff_cut

extern

Referenced by main().

centroid_screen

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::centroid_screen

extern

centroid_weights

StringOptionKey const basic::options::OptionKeys::stepwise::protein::centroid_weights

extern

Referenced by main(), and rebuild_centroid_test().

cluster_by_all_atom_rmsd

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::cluster_by_all_atom_rmsd

extern

Referenced by cluster_outfile_test(), main(), and rebuild_centroid_test().

disable_sampling_of_loop_takeoff

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::disable_sampling_of_loop_takeoff

extern

Referenced by main().

disulfide_file

StringOptionKey const basic::options::OptionKeys::stepwise::protein::disulfide_file

extern

Referenced by initialize_native_pose(), main(), and rebuild_test().

expand_loop_takeoff

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::expand_loop_takeoff

extern

filter_native_big_bins

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::filter_native_big_bins

extern

Referenced by main().

ghost_loops

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::ghost_loops

extern

Referenced by main().

global_optimize

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::global_optimize

extern

Referenced by main().

move_jumps_between_chains

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::move_jumps_between_chains

extern

Referenced by main().

n_sample

IntegerOptionKey const basic::options::OptionKeys::stepwise::protein::n_sample

extern

Referenced by define_states_test(), initialize_rigid_body_sampler(), main(), one_chain_MC_sampling(), one_chain_ST_MC(), sample_trp_test(), sample_trp_tyr_test(), score12_plot_test(), spinner_test(), and swa_rna_sample().

nstruct_centroid

IntegerOptionKey const basic::options::OptionKeys::stepwise::protein::nstruct_centroid

extern

Referenced by main().

protein

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::protein

extern

Referenced by CovalentPeptidomimeticCreator::apply(), each_aa_test(), main(), minimizer_test(), rebuild_test(), sample_rama_test(), and stepwise_template_test().

protein_prepack

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::protein_prepack

extern

Referenced by main(), and rebuild_test().

sample_beta

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::sample_beta

extern

Referenced by main().

score_diff_cut

RealOptionKey const basic::options::OptionKeys::stepwise::protein::score_diff_cut

extern

Referenced by cluster_outfile_test().

skip_coord_constraints

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::skip_coord_constraints

extern

use_packer_instead_of_rotamer_trials

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::use_packer_instead_of_rotamer_trials

extern

Referenced by main().