pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor Class Reference

Inheritance diagram for pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor:

Public Member Functions
def	setUpClass (cls)
def	tearDownClass (cls)
def	test_pose_cache (self)

Public Attributes
	scorefxn
	pose
	workdir
	loaded_probabilities_metric
	best_mutations_from_probabilities_metric
	per_residue_clash_metric
	composite_settings_metric
	custom_string_value_metric
	custom_real_value_metric

Member Function Documentation

setUpClass()

def pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.setUpClass

(

cls

)

References pyrosetta.init().

tearDownClass()

def pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.tearDownClass

(

cls

)

References pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.workdir, pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.workdir, pyrosetta.tests.distributed.cluster.test_smoke.TestBase.workdir, test.T010_LoadPDB.LoadPDBTest.workdir, and test.T300_PyJobDistributor.TestPyJobDistributor.workdir.

test_pose_cache()

def pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.test_pose_cache

(

self

)

References hbs_creator.apply(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.best_mutations_from_probabilities_metric, pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.composite_settings_metric, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.custom_real_value_metric, pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.custom_real_value_metric, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.custom_string_value_metric, pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.custom_string_value_metric, run_backbone.float, ObjexxFCL.len(), basic::options::OptionKeys::in::file.list, pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.loaded_probabilities_metric, pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.per_residue_clash_metric, PDB_IOBenchmark.pose, ScoreBenchmark.pose, ShearMoverBenchmark.pose, SmallMoverBenchmark.pose, SamplingManager.pose, apps::pilot::KicSandbox.pose, PoseAndData.pose, PoseWrap.pose, MatchBase.pose, MatchLig.pose, SlideTask.pose(), HIT.pose, WorkDat.pose, pyrosetta.bindings.pose.PoseResidueAccessor.pose, pyrosetta.bindings.pose.PoseResidueLabelAccessor.pose, pyrosetta.bindings.pose.PoseScoreAccessor.pose, pyrosetta.bindings.scores.base.PoseCacheAccessorBase.pose, test.T300_PyJobDistributor.TestPyJobDistributor.pose, ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.pose(), pyrosetta.distributed.packed_pose.core.PackedPose.pose(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.pose, test.T010_LoadPDB.LoadPDBTest.pose, range, MinimizerBenchmark< sft, TScale >.scorefxn, ExtractATD.scorefxn(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.scorefxn, pyrosetta.toolbox.py_jobdistributor.PyJobDistributor.scorefxn, test.T010_LoadPDB.LoadPDBTest.scorefxn, pyrosetta.bindings.warnings.setPoseExtraScore(), subloop_histogram.size, and str().

Member Data Documentation

best_mutations_from_probabilities_metric

pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.best_mutations_from_probabilities_metric

Referenced by pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.test_pose_cache().

composite_settings_metric

pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.composite_settings_metric

Referenced by pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.test_pose_cache().

custom_real_value_metric

pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.custom_real_value_metric

Referenced by pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.__setitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_keys_from_sm_data(), and pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.test_pose_cache().

custom_string_value_metric

pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.custom_string_value_metric

Referenced by pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.__setitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_keys_from_sm_data(), and pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.test_pose_cache().

loaded_probabilities_metric

pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.loaded_probabilities_metric

Referenced by pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.test_pose_cache().

per_residue_clash_metric

pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.per_residue_clash_metric

Referenced by pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.test_pose_cache().

pose

pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.pose

Referenced by pyrosetta.bindings.pose.PoseScoreAccessor.__delitem__(), pyrosetta.bindings.scores.core.PoseCacheAccessor.__delitem__(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.__delitem__(), pyrosetta.bindings.pose.PoseResidueAccessor.__getitem__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor.__getitem__(), pyrosetta.bindings.pose.PoseResidueAccessor.__iadd__(), pyrosetta.bindings.pose.PoseResidueAccessor.__imul__(), pyrosetta.bindings.pose.PoseResidueAccessor.__iter__(), pyrosetta.bindings.pose.PoseResidueAccessor.__len__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor.__len__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor.__repr__(), pyrosetta.bindings.pose.PoseResidueAccessor.__reversed__(), pyrosetta.bindings.pose.PoseScoreAccessor.__setitem__(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase.__setitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._get_sm_data_dict(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._has_reserved_custom_metric_keys(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_keys_from_sm_data(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase._maybe_delete_reserved_keys_from_sm_data(), pyrosetta.bindings.pose.PoseScoreAccessor.all(), pyrosetta.bindings.scores.energies.EnergiesAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraFloatScoresDataAccessor.all(), pyrosetta.bindings.scores.extra_scores.ExtraStringScoresDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueStringDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueRealDataAccessor.all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueProbabilitiesDataAccessor.all(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase.apply(), pyrosetta.bindings.pose.PoseScoreAccessor.clear(), pyrosetta.bindings.scores.core.PoseCacheAccessor.clear(), pyrosetta.bindings.scores.energies.EnergiesAccessor.clear(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase.clear(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.clear(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.clear(), pyrosetta.distributed.packed_pose.core.PackedPose.clone(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.composite_real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.composite_string(), pyrosetta.distributed.packed_pose.core.PackedPose.empty(), pyrosetta.bindings.pose.PoseScoreAccessor.energies(), pyrosetta.bindings.scores.core.PoseCacheAccessor.energies(), pyrosetta.bindings.pose.PoseScoreAccessor.extra(), pyrosetta.bindings.scores.core.PoseCacheAccessor.extra(), pyrosetta.bindings.scores.core.PoseCacheAccessor.metrics(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.per_residue_probabilities(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.per_residue_real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.per_residue_string(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.real(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor.string(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor.string(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd_at(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd_serializable_scores(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd_unserializable_scores(), test.T010_LoadPDB.LoadPDBTest.test_pdbstring_io(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.test_pose_cache(), test.T010_LoadPDB.LoadPDBTest.test_roundtrip_file(), test.T010_LoadPDB.LoadPDBTest.test_roundtrip_pdb(), test.T010_LoadPDB.LoadPDBTest.test_roundtrip_scored_pdb(), and pyrosetta.distributed.packed_pose.core.PackedPose.update_scores().

scorefxn

pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.scorefxn

Referenced by pyrosetta.toolbox.py_jobdistributor.PyJobDistributor.output_decoy(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.test_pose_cache(), and test.T010_LoadPDB.LoadPDBTest.test_roundtrip_scored_pdb().

workdir

pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.workdir

Referenced by pyrosetta.tests.distributed.cluster.test_smoke.TestBase.tearDown(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor.tearDownClass(), pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.tearDownClass(), test.T010_LoadPDB.LoadPDBTest.tearDownClass(), test.T300_PyJobDistributor.TestPyJobDistributor.tearDownClass(), pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores(), pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores_in_protocol(), pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest.test_detached_scores_with_reserve_scores(), pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest.test_generate_builtin_clients(), pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest.test_generate_multi_user_clients(), pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest.test_generate_partition_clients(), pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest.test_generate_user_client(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd_serializable_scores(), test.T300_PyJobDistributor.TestPyJobDistributor.test_jd_unserializable_scores(), test.T010_LoadPDB.LoadPDBTest.test_roundtrip_file(), test.T010_LoadPDB.LoadPDBTest.test_roundtrip_pdb(), and test.T010_LoadPDB.LoadPDBTest.test_roundtrip_scored_pdb().

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The documentation for this class was generated from the following file:

• src/python/PyRosetta/src/pyrosetta/tests/bindings/core/test_pose.py