basic::options::OptionKeys::frags::contacts Namespace Reference

Variables
BooleanOptionKey const	contacts
IntegerOptionKey const	min_seq_sep
RealVectorOptionKey const	dist_cutoffs
RealOptionKey const	centroid_distance_scale_factor
StringVectorOptionKey const	type
IntegerOptionKey const	neighbors
BooleanOptionKey const	output_all

Variable Documentation

centroid_distance_scale_factor

RealOptionKey const basic::options::OptionKeys::frags::contacts::centroid_distance_scale_factor

extern

contacts

BooleanOptionKey const basic::options::OptionKeys::frags::contacts::contacts

extern

dist_cutoffs

RealVectorOptionKey const basic::options::OptionKeys::frags::contacts::dist_cutoffs

extern

min_seq_sep

IntegerOptionKey const basic::options::OptionKeys::frags::contacts::min_seq_sep

extern

Referenced by collect_stats(), register_options(), and run().

neighbors

IntegerOptionKey const basic::options::OptionKeys::frags::contacts::neighbors

extern

Referenced by HemeBindingMover::apply(), find_clusters(), find_residues_around_mutation(), get_num_nbrs(), main(), numeric::kdtree::nearest_neighbors(), SphereSample::read_sphere_data(), and BuriedUnsatPolarsFinder::single_bunsat_thorough_check().

output_all

BooleanOptionKey const basic::options::OptionKeys::frags::contacts::output_all

extern

Referenced by base_pair_to_base_pair_test(), and main().

type

StringVectorOptionKey const basic::options::OptionKeys::frags::contacts::type

extern