basic::options::OptionKeys::flexPepDocking Namespace Reference

Variables
BooleanOptionKey const	flexPepDocking
StringOptionKey const	params_file
IntegerOptionKey const	peptide_anchor
StringOptionKey const	receptor_chain
StringOptionKey const	peptide_chain
BooleanOptionKey const	pep_fold_only
BooleanOptionKey const	lowres_abinitio
BooleanOptionKey const	lowres_preoptimize
BooleanOptionKey const	flexPepDockingMinimizeOnly
BooleanOptionKey const	extend_peptide
BooleanOptionKey const	place_peptide_on_binding_site
IntegerOptionKey const	sample_pcs
BooleanOptionKey const	SlideIntoContact
BooleanOptionKey const	recalculate_foldtree
BooleanOptionKey const	pep_refine
BooleanOptionKey const	rbMCM
BooleanOptionKey const	torsionsMCM
BooleanOptionKey const	peptide_loop_model
BooleanOptionKey const	backrub_peptide
BooleanOptionKey const	boost_fa_atr
BooleanOptionKey const	ramp_fa_rep
BooleanOptionKey const	ramp_rama
BooleanOptionKey const	flexpep_score_only
FileOptionKey const	ref_startstruct
BooleanOptionKey const	use_cen_score
BooleanOptionKey const	design_peptide
IntegerOptionKey const	rep_ramp_cycles
IntegerOptionKey const	mcm_cycles
RealOptionKey const	random_phi_psi_preturbation
RealOptionKey const	smove_angle_range
BooleanOptionKey const	min_receptor_bb
RealOptionKey const	random_trans_start
RealOptionKey const	random_rot_start
BooleanOptionKey const	flexpep_prepack
BooleanOptionKey const	flexpep_noprepack1
BooleanOptionKey const	flexpep_noprepack2
RealOptionKey const	score_filter
IntegerOptionKey const	hb_filter
IntegerOptionKey const	hotspot_filter
StringOptionKey const	frag5
RealOptionKey const	frag9_weight
RealOptionKey const	frag5_weight
RealOptionKey const	frag3_weight
BooleanOptionKey const	pSer2Asp_centroid
BooleanOptionKey const	pSer2Glu_centroid
BooleanOptionKey const	dumpPDB_abinitio
BooleanOptionKey const	dumpPDB_lowres
BooleanOptionKey const	dumpPDB_hires

Variable Documentation

backrub_peptide

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::backrub_peptide

extern

boost_fa_atr

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::boost_fa_atr

extern

design_peptide

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::design_peptide

extern

dumpPDB_abinitio

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::dumpPDB_abinitio

extern

dumpPDB_hires

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::dumpPDB_hires

extern

dumpPDB_lowres

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::dumpPDB_lowres

extern

extend_peptide

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::extend_peptide

extern

flexpep_noprepack1

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexpep_noprepack1

extern

flexpep_noprepack2

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexpep_noprepack2

extern

flexpep_prepack

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexpep_prepack

extern

flexpep_score_only

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexpep_score_only

extern

flexPepDocking

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexPepDocking

extern

flexPepDockingMinimizeOnly

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexPepDockingMinimizeOnly

extern

frag3_weight

RealOptionKey const basic::options::OptionKeys::flexPepDocking::frag3_weight

extern

frag5

StringOptionKey const basic::options::OptionKeys::flexPepDocking::frag5

extern

frag5_weight

RealOptionKey const basic::options::OptionKeys::flexPepDocking::frag5_weight

extern

frag9_weight

RealOptionKey const basic::options::OptionKeys::flexPepDocking::frag9_weight

extern

hb_filter

IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::hb_filter

extern

hotspot_filter

IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::hotspot_filter

extern

lowres_abinitio

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::lowres_abinitio

extern

Referenced by main().

lowres_preoptimize

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::lowres_preoptimize

extern

mcm_cycles

IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::mcm_cycles

extern

min_receptor_bb

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::min_receptor_bb

extern

params_file

StringOptionKey const basic::options::OptionKeys::flexPepDocking::params_file

extern

Referenced by RNA_ScoreMover::apply(), coarse_rna_denovo_test(), cs_rosetta_rna_pdb(), general_initialize(), main(), rna_assemble_all_combinations_test(), rna_assemble_test(), and rna_fullatom_minimize_test().

pep_fold_only

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::pep_fold_only

extern

pep_refine

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::pep_refine

extern

peptide_anchor

IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::peptide_anchor

extern

peptide_chain

StringOptionKey const basic::options::OptionKeys::flexPepDocking::peptide_chain

extern

peptide_loop_model

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::peptide_loop_model

extern

place_peptide_on_binding_site

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::place_peptide_on_binding_site

extern

pSer2Asp_centroid

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::pSer2Asp_centroid

extern

pSer2Glu_centroid

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::pSer2Glu_centroid

extern

ramp_fa_rep

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::ramp_fa_rep

extern

ramp_rama

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::ramp_rama

extern

random_phi_psi_preturbation

RealOptionKey const basic::options::OptionKeys::flexPepDocking::random_phi_psi_preturbation

extern

random_rot_start

RealOptionKey const basic::options::OptionKeys::flexPepDocking::random_rot_start

extern

random_trans_start

RealOptionKey const basic::options::OptionKeys::flexPepDocking::random_trans_start

extern

rbMCM

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::rbMCM

extern

recalculate_foldtree

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::recalculate_foldtree

extern

receptor_chain

StringOptionKey const basic::options::OptionKeys::flexPepDocking::receptor_chain

extern

ref_startstruct

FileOptionKey const basic::options::OptionKeys::flexPepDocking::ref_startstruct

extern

rep_ramp_cycles

IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::rep_ramp_cycles

extern

sample_pcs

IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::sample_pcs

extern

score_filter

RealOptionKey const basic::options::OptionKeys::flexPepDocking::score_filter

extern

SlideIntoContact

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::SlideIntoContact

extern

smove_angle_range

RealOptionKey const basic::options::OptionKeys::flexPepDocking::smove_angle_range

extern

torsionsMCM

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::torsionsMCM

extern

use_cen_score

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::use_cen_score

extern