basic::options::OptionKeys::ufv Namespace Reference

Namespaces
	insert

Variables
BooleanOptionKey const	ufv
IntegerOptionKey const	left
IntegerOptionKey const	right
StringOptionKey const	ss
StringOptionKey const	aa_during_build
StringOptionKey const	aa_during_design_refine
BooleanOptionKey const	keep_junction_torsions
FileOptionKey const	ufv_loops
BooleanOptionKey const	use_fullmer
StringOptionKey const	centroid_loop_mover
BooleanOptionKey const	no_neighborhood_design
IntegerOptionKey const	dr_cycles
StringOptionKey const	centroid_sfx
StringOptionKey const	centroid_sfx_patch
StringOptionKey const	fullatom_sfx
StringOptionKey const	fullatom_sfx_patch

Variable Documentation

aa_during_build

StringOptionKey const basic::options::OptionKeys::ufv::aa_during_build

extern

Referenced by check_option_conflicts(), fill_optional_options(), graphics_main(), load_loops_from_file(), and setup_segment_insert().

aa_during_design_refine

StringOptionKey const basic::options::OptionKeys::ufv::aa_during_design_refine

extern

Referenced by check_option_conflicts(), fill_optional_options(), graphics_main(), load_loops_from_file(), and setup_segment_insert().

centroid_loop_mover

StringOptionKey const basic::options::OptionKeys::ufv::centroid_loop_mover

extern

Referenced by fill_optional_options(), and graphics_main().

centroid_sfx

StringOptionKey const basic::options::OptionKeys::ufv::centroid_sfx

extern

Referenced by fill_optional_options(), and graphics_main().

centroid_sfx_patch

StringOptionKey const basic::options::OptionKeys::ufv::centroid_sfx_patch

extern

Referenced by fill_optional_options(), and graphics_main().

dr_cycles

IntegerOptionKey const basic::options::OptionKeys::ufv::dr_cycles

extern

Referenced by fill_optional_options(), and graphics_main().

fullatom_sfx

StringOptionKey const basic::options::OptionKeys::ufv::fullatom_sfx

extern

Referenced by fill_optional_options(), and graphics_main().

fullatom_sfx_patch

StringOptionKey const basic::options::OptionKeys::ufv::fullatom_sfx_patch

extern

Referenced by fill_optional_options(), and graphics_main().

keep_junction_torsions

BooleanOptionKey const basic::options::OptionKeys::ufv::keep_junction_torsions

extern

Referenced by fill_optional_options(), graphics_main(), and load_loops_from_file().

left

IntegerOptionKey const basic::options::OptionKeys::ufv::left

extern

Referenced by calculate_theoretical_RNA_length_with_bond_angle_dependence(), check_option_conflicts(), fill_optional_options(), graphics_main(), utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >::gray_target(), hb_score(), hermann_phase_two(), ObjexxFCL::left_Fstring_of(), ObjexxFCL::left_string_of(), ObjexxFCL::format::LJ(), load_loops_from_file(), main(), utility::SortFirst< S, T >::operator()(), utility::SortSecond< S, T >::operator()(), utility::pad_right(), rama_list_pred(), rel_sasa_score(), setup_segment_insert(), sort_min(), protocols::abinitio::sort_PoseWithScore(), ObjexxFCL::format::SS(), and ObjexxFCL::format::SW().

no_neighborhood_design

BooleanOptionKey const basic::options::OptionKeys::ufv::no_neighborhood_design

extern

Referenced by fill_optional_options(), and graphics_main().

right

IntegerOptionKey const basic::options::OptionKeys::ufv::right

extern

Referenced by check_option_conflicts(), fill_optional_options(), ObjexxFCL::fixed_Fstring_of(), ObjexxFCL::fixed_string_of(), ObjexxFCL::general_Fstring_of(), ObjexxFCL::general_string_of(), graphics_main(), utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >::gray_target(), hb_score(), ObjexxFCL::format::I(), load_loops_from_file(), main(), numeric::IntervalSet< T >::operator&(), utility::SortFirst< S, T >::operator()(), utility::SortSecond< S, T >::operator()(), utility::CSI_Sequence::operator+(), operator<<(), numeric::operator<<(), ObjexxFCL::operator<<(), utility::pad_left(), rama_list_pred(), rel_sasa_score(), ObjexxFCL::right_Fstring_of(), ObjexxFCL::right_string_of(), ObjexxFCL::format::RJ(), ObjexxFCL::scientific_Fstring_of(), ObjexxFCL::scientific_string_of(), setup_segment_insert(), numeric::HomogeneousTransform< T >::show(), sort_min(), and protocols::abinitio::sort_PoseWithScore().

ss

StringOptionKey const basic::options::OptionKeys::ufv::ss

extern

Referenced by check_option_conflicts(), fill_optional_options(), graphics_main(), and setup_segment_insert().

ufv

BooleanOptionKey const basic::options::OptionKeys::ufv::ufv

extern

ufv_loops

FileOptionKey const basic::options::OptionKeys::ufv::ufv_loops

extern

Referenced by check_option_conflicts(), fill_optional_options(), and graphics_main().

use_fullmer

BooleanOptionKey const basic::options::OptionKeys::ufv::use_fullmer

extern

Referenced by fill_optional_options(), and graphics_main().