Rosetta

apps → utility Relation

File in src/appsIncludes file in src/utility
public / interface_design / anchored_design / AnchoredDesign.ccexcn / Exceptions.hh
public / interface_design / anchored_design / AnchoredPDBCreator.ccexcn / Exceptions.hh
public / interface_design / anchored_design / AnchoredPDBCreator.ccio / izstream.hh
public / interface_design / anchored_design / AnchoredPDBCreator.ccvector1.hh
public / interface_design / anchored_design / AnchorFinder.ccexcn / Exceptions.hh
public / interface_design / anchored_design / AnchorFinder.ccexit.hh
public / interface_design / anchored_design / AnchorFinder.ccfile / FileName.hh
public / interface_design / anchored_design / AnchorFinder.ccio / ozstream.hh
public / interface_design / anchored_design / AnchorFinder.ccgraph / UpperEdgeGraph.hh
public / interface_design / anchored_design / AnchorFinder.ccvector1.hh
public / antibody / antibody_CR_paratope.ccexcn / Exceptions.hh
public / antibody / antibody_designer.ccexcn / Exceptions.hh
public / antibody / antibody_graft.ccexcn / Exceptions.hh
public / antibody / antibody_H3.ccexcn / Exceptions.hh
public / antibody / antibody_legacy.ccexcn / Exceptions.hh
public / antibody / antibody_numbering_converter.ccexcn / Exceptions.hh
pilot / andrew / apl_msd.ccstring_util.hh
public / analysis / atom_energy_breakdown.ccvector1.hh
public / analysis / batch_distances.ccexcn / Exceptions.hh
public / analysis / batch_distances.ccstring_util.hh
public / analysis / batch_distances.ccvector1.hh
public / analysis / cl_complex_rescore.ccfile / FileName.hh
public / analysis / cl_complex_rescore.ccio / izstream.hh
public / analysis / cl_complex_rescore.ccio / ozstream.hh
public / analysis / cl_complex_rescore.ccstring_util.hh
public / analysis / cl_complex_rescore.ccvector1.hh
public / analysis / contactMap.ccvector1.hh
public / analysis / cst_info.ccexcn / Exceptions.hh
public / analysis / cst_info.ccstring_util.hh
pilot / amelie / design_tight_clusters.ccexcn / Exceptions.hh
pilot / amelie / design_tight_clusters.ccio / ozstream.hh
pilot / amelie / design_tight_clusters.ccvector1.hh
pilot / amelie / detect_tight_clusters.ccexcn / Exceptions.hh
pilot / amelie / detect_tight_clusters.ccio / ozstream.hh
pilot / amelie / detect_tight_clusters.ccvector1.hh
pilot / andrew / domain_assembly_jd2.ccexcn / Exceptions.hh
public / analysis / ensemble_analysis.ccexcn / Exceptions.hh
public / analysis / ensemble_analysis.ccexit.hh
public / analysis / ensemble_analysis.ccio / ozstream.hh
public / analysis / ensemble_analysis.ccvector1.hh
public / analysis / fast_clustering.ccexcn / Exceptions.hh
public / analysis / fast_clustering.ccexit.hh
public / analysis / fast_clustering.ccfile / FileName.hh
public / analysis / fast_clustering.ccio / ozstream.hh
public / analysis / fast_clustering.ccvector1.hh
pilot / andrew / find_buns.ccfile / FileName.hh
pilot / amuenks / find_ligand_local_res.ccexcn / Exceptions.hh
pilot / amuenks / find_ligand_local_res.ccfile / file_sys_util.hh
pilot / amuenks / find_ligand_local_res.ccfile / FileName.hh
pilot / amuenks / find_ligand_local_res.ccio / izstream.hh
pilot / amuenks / find_ligand_local_res.ccio / ozstream.hh
pilot / amuenks / find_ligand_local_res.ccstring_util.hh
pilot / andrew / fixbb_jd3.ccexcn / Exceptions.hh
pilot / andrew / fixbb_jd3.cctag / Tag.hh
pilot / andrew / fixbb_jd3.ccvector0.hh
pilot / andrew / fixbb_jd3.ccvector1.hh
pilot / andrew / fixbb_jd3.cctag / XMLSchemaGeneration.hh
pilot / andrew / flex_regions_alc.ccstring_util.hh
pilot / jadolfbr / antibody_design / graft_design_cdrs.ccexcn / Exceptions.hh
pilot / jadolfbr / antibody_design / graft_design_cdrs.ccstring_util.hh
pilot / jadolfbr / antibody_design / graft_design_cdrs.ccvector1.hh
public / analysis / HDXEnergy.ccexcn / Exceptions.hh
public / analysis / HDXEnergy.ccfile / FileName.hh
public / analysis / HDXEnergy.ccio / izstream.hh
public / analysis / HDXEnergy.ccio / ozstream.hh
public / analysis / HDXEnergy.ccstring_util.hh
public / analysis / HDXEnergy.ccvector1.hh
pilot / aginsparg / holes_identifier.ccexcn / Exceptions.hh
pilot / aginsparg / holes_identifier.ccfile / file_sys_util.hh
pilot / aginsparg / holes_identifier.ccfile / FileName.hh
pilot / aginsparg / holes_identifier.ccio / ozstream.hh
pilot / aginsparg / holes_identifier.ccstring_util.hh
pilot / aginsparg / holes_identifier.ccvector1.hh
public / antibody / identify_cdr_clusters.ccexcn / Exceptions.hh
public / antibody / identify_cdr_clusters.ccstring_util.hh
pilot / andrew / interface_ddg_bind.ccfile / FileName.hh
pilot / andrew / interface_ddg_bind.ccio / izstream.hh
pilot / andrew / interface_ddg_bind.ccvector1.hh
public / analysis / interface_energy.ccvector1.hh
public / analysis / InterfaceAnalyzer.ccvector1.hh
pilot / andrew / kellogg_ddg_jd3.ccexcn / Exceptions.hh
pilot / andrew / kellogg_ddg_jd3.cctag / Tag.hh
pilot / andrew / kellogg_ddg_jd3.ccvector0.hh
pilot / andrew / kellogg_ddg_jd3.ccvector1.hh
pilot / andrew / kellogg_ddg_jd3.cctag / XMLSchemaGeneration.hh
pilot / aginsparg / ligand_discovery_search_protocol.ccexcn / Exceptions.hh
pilot / aginsparg / ligand_discovery_search_protocol.ccfile / file_sys_util.hh
pilot / aginsparg / ligand_discovery_search_protocol.ccfile / FileName.hh
pilot / aginsparg / ligand_discovery_search_protocol.ccio / ozstream.hh
pilot / aginsparg / ligand_discovery_search_protocol.ccstring_util.hh
pilot / aginsparg / ligand_discovery_search_protocol.ccvector1.hh
pilot / andrew / measure_catalytic_geometry.ccstring_util.hh
pilot / andrew / measure_lcaa_neighbor_radii.ccLexicographicalIterator.hh
pilot / ameya / mixedMC.ccpointer / memory.hh
pilot / ameya / mixedMC.ccpointer / owning_ptr.hh
pilot / andrew / mmt_msd.ccexcn / Exceptions.hh
pilot / andrew / mmt_msd.ccmpi_util.hh
pilot / andrew / mpi_msd.ccexcn / Exceptions.hh
pilot / andrew / mpi_msd.ccmpi_util.hh
pilot / andrew / mpi_msd.ccstring_util.hh
pilot / andrew / mpi_test.ccmpi_util.hh
pilot / andrew / mpi_test.ccstring_util.hh
public / antibody / packing_angle.ccexcn / Exceptions.hh
public / antibody / packing_angle.ccvector1.hh
public / analysis / parcs_ccs_calc.ccexit.hh
public / analysis / parcs_ccs_calc.ccio / ozstream.hh
public / analysis / per_residue_energies.ccvector1.hh
public / analysis / per_residue_solvent_exposure.ccexcn / Exceptions.hh
public / analysis / per_residue_solvent_exposure.ccfile / FileName.hh
public / analysis / per_residue_solvent_exposure.ccio / izstream.hh
public / analysis / per_residue_solvent_exposure.ccio / ozstream.hh
public / analysis / per_residue_solvent_exposure.ccvector1.hh
pilot / jadolfbr / antibody_design / prob_design_cdrs.ccexcn / Exceptions.hh
pilot / kale / native_ensemble / analysis / query_trajectory.ccvector1.hh
pilot / andrew / relax_jd3.ccexcn / Exceptions.hh
pilot / andrew / relax_jd3.ccoptions / OptionCollection.hh
pilot / andrew / relax_jd3.ccoptions / keys / OptionKeyList.hh
pilot / andrew / relax_jd3.cctag / Tag.fwd.hh
pilot / andrew / relax_jd3.ccvector1.hh
public / analysis / report_hbonds_for_plugin.ccfile / FileName.hh
public / analysis / report_hbonds_for_plugin.ccio / izstream.hh
public / analysis / report_hbonds_for_plugin.ccvector1.hh
public / analysis / residue_energy_breakdown.ccvector1.hh
public / analysis / ResidueDisorder.ccio / ozstream.hh
public / analysis / sc.ccexcn / Exceptions.hh
public / analysis / score.ccexcn / Exceptions.hh
public / analysis / score_jd2.ccexcn / Exceptions.hh
public / analysis / SID_ERMS_prediction.ccio / izstream.hh
public / analysis / SID_ERMS_prediction.ccio / ozstream.hh
public / antibody / snugdock.ccexcn / Exceptions.hh
pilot / aginsparg / space_fill_analysis.ccexcn / Exceptions.hh
pilot / aginsparg / space_fill_analysis.ccfile / file_sys_util.hh
pilot / aginsparg / space_fill_analysis.ccfile / FileName.hh
pilot / aginsparg / space_fill_analysis.ccio / ozstream.hh
pilot / aginsparg / space_fill_analysis.ccstring_util.hh
pilot / aginsparg / space_fill_analysis.ccvector1.hh
pilot / andrew / sweep_respair_energies.ccsql_database / DatabaseSessionManager.hh
pilot / andrew / sweep_respair_energies.ccfile / FileName.hh
pilot / andrew / sweep_respair_energies.ccio / izstream.hh
pilot / andrew / sweep_respair_energies.ccLexicographicalIterator.hh
pilot / andre / SymmDataTest.ccexcn / Exceptions.hh
pilot / kale / native_ensemble / analysis / trajectory_movie.ccsql_database / DatabaseSessionManager.fwd.hh
pilot / kale / native_ensemble / analysis / trajectory_movie.cctools / make_vector1.hh
pilot / kale / native_ensemble / analysis / trajectory_movie.ccvector1.hh
pilot / andrew / version_scorefunction.ccsort_predicates.hh
pilot / andrew / version_scorefunction.ccstring_util.hh
pilot / andrew / version_scorefunction.ccvector1.hh
pilot / ralford / archive / check_rotation.ccvector1.hh
pilot / ralford / archive / check_rotation.ccexcn / Exceptions.hh
pilot / ralford / archive / check_rotation.ccpointer / owning_ptr.hh
pilot / ralford / archive / mpframework_integration.ccexcn / Exceptions.hh
pilot / ralford / archive / sample_tilt_protocol.ccexcn / Exceptions.hh
pilot / ralford / archive / sample_tilt_protocol.ccpointer / owning_ptr.hh
pilot / ralford / archive / sample_tilt_protocol.ccvector1.hh
pilot / ralford / archive / test_mp_rmsd.ccexcn / Exceptions.hh
pilot / ralford / archive / test_mp_rmsd.ccpointer / owning_ptr.hh
pilot / ralford / archive / transform_into_mem.ccvector1.hh
pilot / ralford / archive / transform_into_mem.ccexcn / Exceptions.hh
pilot / ralford / archive / transform_into_mem.ccpointer / owning_ptr.hh
pilot / ralford / archive / transform_into_membrane.ccexcn / Exceptions.hh
pilot / ralford / archive / translate_membrane_pose.ccvector1.hh
pilot / ralford / archive / translate_membrane_pose.ccexcn / Exceptions.hh
pilot / ralford / archive / translate_membrane_pose.ccpointer / owning_ptr.hh
pilot / ralford / archive / translate_view_membrane.ccvector1.hh
pilot / ralford / archive / translate_view_membrane.ccexcn / Exceptions.hh
pilot / ralford / archive / translate_view_membrane.ccpointer / owning_ptr.hh
pilot / ralford / archive / version_mpscorefxn.ccsort_predicates.hh
pilot / ralford / archive / version_mpscorefxn.ccstring_util.hh
pilot / ralford / archive / version_mpscorefxn.ccvector1.hh
pilot / arubenstein / sequence_tolerance_mf.ccfile / FileName.hh
pilot / arubenstein / sequence_tolerance_mf.ccvector1.hh
pilot / arubenstein / sequence_tolerance_mf.ccio / izstream.hh
pilot / arubenstein / sequence_tolerance_mf.ccio / ozstream.hh
pilot / arubenstein / sequence_tolerance_mf.ccexcn / Exceptions.hh
pilot / arubenstein / sequence_tolerance_mf.ccvector0.hh
pilot / arubenstein / spec_prof_compare.ccvector1.hh
pilot / arubenstein / spec_prof_compare.ccfile / FileName.hh
pilot / arubenstein / spec_prof_compare.ccio / izstream.hh
pilot / smlewis / ascan / AlanineScanner.ccexit.hh
pilot / ashworth / MSA_design.ccio / izstream.hh
pilot / ashworth / MSA_design.ccfile / file_sys_util.hh
pilot / ashworth / MSA_design.ccfile / FileName.hh
pilot / ashworth / MSA_design.ccexit.hh
pilot / ashworth / MSA_design.ccvector1.hh
pilot / ashworth / multistate_design_ga.ccfile / file_sys_util.hh
pilot / ashworth / multistate_design_ga.ccfile / FileName.hh
pilot / ashworth / multistate_design_ga.ccvector1.hh
pilot / ashworth / multistate_design_ga.ccstring_util.hh
pilot / awatkins / a3b_hbs_creator.ccpointer / owning_ptr.hh
pilot / awatkins / a3b_hbs_dock_design.ccpointer / owning_ptr.hh
pilot / awatkins / a3b_test.ccvector1.hh
pilot / awatkins / a3b_test.ccexcn / Exceptions.hh
pilot / awatkins / aggregate_coarse_rna_vdw.ccjson_utilities.hh
pilot / awatkins / aggregate_coarse_rna_vdw.ccvector1.hh
pilot / awatkins / aggregate_coarse_rna_vdw.ccio / ozstream.hh
pilot / awatkins / aggregate_coarse_rna_vdw.cctools / make_vector.hh
pilot / awatkins / aggregate_coarse_rna_vdw.ccexcn / Exceptions.hh
pilot / awatkins / aggregate_coarse_rna_vdw.ccoptions / keys / OptionKeyList.hh
pilot / awatkins / aramid_folding.ccjson_utilities.hh
pilot / awatkins / aramid_folding.ccvector1.hh
pilot / awatkins / aramid_folding.ccexcn / Exceptions.hh
pilot / awatkins / b3a_distro_kinemage.ccpointer / owning_ptr.hh
pilot / awatkins / beta_314_vs_a3b.ccfile / FileName.fwd.hh
pilot / awatkins / build_a3b.ccexcn / Exceptions.hh
pilot / awatkins / cov_hbs.ccvector1.hh
pilot / awatkins / cov_hbs.ccfile / FileName.hh
pilot / awatkins / cov_hbs.ccfile / file_sys_util.hh
pilot / awatkins / cov_hbs.ccexcn / Exceptions.hh
pilot / awatkins / cov_peptidomimetic_creator.ccvector1.hh
pilot / awatkins / cov_peptidomimetic_creator.ccfile / FileName.hh
pilot / awatkins / cov_peptidomimetic_creator.ccfile / file_sys_util.hh
pilot / awatkins / cov_peptidomimetic_creator.ccexcn / Exceptions.hh
pilot / awatkins / cov_test.ccexcn / Exceptions.hh
pilot / awatkins / diversify_conotoxin.ccpointer / owning_ptr.hh
pilot / awatkins / diversify_conotoxin.ccstring_util.hh
pilot / awatkins / diversify_conotoxin.ccstream_util.hh
pilot / awatkins / get_dihedral_b3aa.ccgraph / Graph.hh
pilot / awatkins / hal_rna_denovo.ccjson_utilities.hh
pilot / awatkins / hal_rna_denovo.ccexcn / Exceptions.hh
pilot / awatkins / macrocycle_sampling.ccvector1.hh
pilot / awatkins / macrocycle_sampling.ccstring_util.hh
pilot / awatkins / make_a3b_bundle.ccvector1.hh
pilot / awatkins / make_ideal_a3b_fragment.ccvector1.hh
pilot / awatkins / make_ideal_a3b_fragment.ccfile / FileName.hh
pilot / awatkins / make_ideal_a3b_fragment.ccfile / file_sys_util.hh
pilot / awatkins / make_ideal_a3b_fragment.ccexcn / Exceptions.hh
pilot / awatkins / mike_linker_test.ccpointer / owning_ptr.hh
pilot / awatkins / mike_linker_test.ccvector1.hh
pilot / awatkins / peptidomimetic_ensembles.ccvector1.hh
pilot / awatkins / peptidomimetic_ensembles.ccvector1.functions.hh
pilot / awatkins / peptoid_hbs.ccpointer / owning_ptr.hh
pilot / awatkins / peptoid_hbs.ccfile / FileName.fwd.hh
pilot / awatkins / polyaramid_test.ccexcn / Exceptions.hh
pilot / awatkins / pose_iteration.ccexcn / Exceptions.hh
pilot / awatkins / test_d_l_readin.ccfile / FileName.fwd.hh
pilot / awatkins / test_metapatch.ccvector1.functions.hh
pilot / awatkins / trial_rna_mutants.ccvector1.hh
pilot / awatkins / trial_rna_mutants.ccio / ozstream.hh
pilot / awatkins / trial_rna_mutants.ccvector0.hh
pilot / awatkins / trial_rna_mutants.ccstring_util.hh
pilot / awatkins / trial_rna_mutants.ccexcn / Exceptions.hh
pilot / awatkins / triazolamer_creator.ccexcn / Exceptions.hh
pilot / awatkins / triazolamer_dock_design.ccpointer / owning_ptr.hh
pilot / awatkins / vancomycin.ccexcn / Exceptions.hh
pilot / barak / BuildFloppyTail.ccvector1.hh
pilot / barthp / membrane_highres_score.ccvector1.hh
pilot / barthp / membrane_highres_score.ccio / ozstream.hh
pilot / barthp / membrane_relax.ccvector1.hh
pilot / barthp / membrane_relax.ccio / ozstream.hh
pilot / barthp / membrane_rescore.ccvector1.hh
pilot / barthp / membrane_rescore.ccio / ozstream.hh
pilot / bazzoli / cnl_env_lost_hbs.ccgraph / Graph.hh
pilot / bazzoli / cnl_env_lost_hbs.ccvector1.hh
pilot / bazzoli / lig_low_sasa.ccvector1.hh
pilot / bazzoli / lig_polar_sat.ccgraph / Graph.hh
pilot / bazzoli / lig_polar_sat.ccvector1.hh
pilot / bazzoli / nrg_res_set.ccgraph / Graph.hh
pilot / bazzoli / nrg_res_set.ccvector1.hh
pilot / bcorreia / fold_from_loops.ccvector1.hh
pilot / bcorreia / fold_from_loops.ccio / ozstream.hh
pilot / bcorreia / fold_from_loops.ccstring_util.hh
pilot / bcorreia / fold_from_loops.hhvector1.hh
pilot / bcorreia / fold_from_loops_devel.ccvector1.hh
pilot / bcorreia / fold_from_loops_devel.ccio / ozstream.hh
pilot / bcorreia / fold_from_loops_devel.hhvector1.hh
pilot / bcorreia / fold_from_loops_devel.hhstring_util.hh
pilot / bcorreia / iterative_design.ccfile / file_sys_util.hh
pilot / bcorreia / iterative_design.ccfile / FileName.hh
pilot / bcorreia / iterative_design.ccvector1.hh
pilot / bcorreia / iterative_design.ccstring_util.hh
pilot / bcorreia / iterative_design.ccfile / gzip_util.hh
pilot / bder / BuriedUnsatPolarsFinder.ccfile / FileName.hh
pilot / bder / BuriedUnsatPolarsFinder.ccvector1.hh
pilot / bder / HbondZinc.ccgraph / Graph.hh
pilot / bder / HbondZinc.ccfile / FileName.hh
pilot / bder / HbondZinc.ccvector1.hh
pilot / bder / HbondZinc_allpolar.ccgraph / Graph.hh
pilot / bder / HbondZinc_allpolar.ccfile / FileName.hh
pilot / bder / HbondZinc_allpolar.ccvector1.hh
pilot / bder / HbondZinc_ser.ccgraph / Graph.hh
pilot / bder / HbondZinc_ser.ccfile / FileName.hh
pilot / bder / HbondZinc_ser.ccvector1.hh
pilot / bder / HbondZincBackbone.ccgraph / Graph.hh
pilot / bder / HbondZincBackbone.ccfile / FileName.hh
pilot / bder / HbondZincBackbone.ccvector1.hh
pilot / bder / HbondZincHHHO.ccgraph / Graph.hh
pilot / bder / HbondZincHHHO.ccfile / FileName.hh
pilot / bder / HbondZincHHHO.ccvector1.hh
pilot / bder / xtal_water_bunsat.ccfile / FileName.hh
pilot / bder / xtal_water_bunsat.ccvector1.hh
pilot / bder / zinc_helix_cap.ccfile / FileName.hh
pilot / bder / zinc_helix_cap.ccvector1.hh
pilot / bder / ZincMinimize.ccfile / FileName.hh
pilot / bder / ZincMinimize.ccvector1.hh
pilot / bder / ZincSiteEvaluator.ccvector1.hh
pilot / bder / ZincSiteEvaluator.ccfile / FileName.hh
public / scenarios / beta_strand_homodimer_design / exposed_strand_finder.ccexit.hh
public / scenarios / beta_strand_homodimer_design / exposed_strand_finder.ccexcn / Exceptions.hh
public / scenarios / beta_strand_homodimer_design / exposed_strand_finder.ccvector1.functions.hh
public / scenarios / beta_strand_homodimer_design / exposed_strand_finder.ccvector1.hh
public / scenarios / beta_strand_homodimer_design / homodimer_design.ccvector1.hh
public / scenarios / beta_strand_homodimer_design / homodimer_design.ccexcn / Exceptions.hh
public / scenarios / beta_strand_homodimer_design / homodimer_maker.ccfile / FileName.hh
public / scenarios / beta_strand_homodimer_design / homodimer_maker.ccvector1.hh
public / scenarios / beta_strand_homodimer_design / homodimer_maker.ccexcn / Exceptions.hh
pilot / biokhar / karen_compare_different_proteins.ccio / ozstream.hh
pilot / bjornw / bus_error.ccio / ozstream.hh
pilot / bjornw / jumpRT_test.ccvector1.hh
pilot / bjornw / jumpRT_test.ccio / ozstream.hh
pilot / blivens / conserve_disulfides.ccvector1.hh
pilot / blivens / convert.ccvector1.hh
pilot / blivens / create_disulf_file.ccvector1.hh
pilot / blivens / disulfide_filter.ccvector1.hh
pilot / blivens / disulfide_finder.ccvector1.hh
pilot / blivens / disulfide_handoff.ccvector1.hh
pilot / blivens / disulfide_scorer.ccvector1.hh
pilot / blivens / rotamerize_disulfides.ccvector1.hh
pilot / blivens / rotamerize_disulfides.ccexit.hh
public / boinc / minirosetta.ccexit.hh
public / boinc / minirosetta.ccexcn / Exceptions.hh
public / boinc / minirosetta.ccvector1.hh
pilot / boon / pilot.ccexcn / Exceptions.hh
pilot / boon / test.ccexcn / Exceptions.hh
pilot / brunette / abego_predict.ccio / ozstream.hh
pilot / brunette / aln_to_disulf.ccio / ozstream.hh
pilot / brunette / aln_to_disulf.ccexit.hh
pilot / brunette / aln_to_disulf.ccvector1.hh
pilot / brunette / aln_to_disulf.ccstring_util.hh
pilot / brunette / aln_to_disulf.ccfile / file_sys_util.hh
pilot / brunette / armEval.ccvector1.hh
pilot / brunette / armEval.ccio / ozstream.hh
pilot / brunette / calc_ssm_energies_with_structure_profile.ccvector1.hh
pilot / brunette / calc_ssm_energies_with_structure_profile.ccfile / FileName.fwd.hh
pilot / brunette / calcFractionFolded.ccvector1.hh
pilot / brunette / calcFractionFolded.ccio / ozstream.hh
pilot / brunette / cluster_alns.ccexcn / Exceptions.hh
pilot / brunette / contact_map_from_homologs.ccexit.hh
pilot / brunette / contact_map_from_homologs.ccstring_util.hh
pilot / brunette / contact_map_from_homologs.ccfile / FileName.hh
pilot / brunette / contact_map_from_homologs.ccfile / file_sys_util.hh
pilot / brunette / contact_map_from_homologs.ccio / ozstream.hh
pilot / brunette / contact_map_from_homologs.ccio / izstream.hh
pilot / brunette / dumpPhiPsiStats.ccvector1.hh
pilot / brunette / dumpPhiPsiStats.ccio / ozstream.hh
pilot / brunette / evalFullLength.ccvector1.hh
pilot / brunette / evalFullLength.ccio / ozstream.hh
pilot / brunette / evalRepeats.ccvector1.hh
pilot / brunette / evalRepeats.ccio / ozstream.hh
pilot / brunette / extractNativeRepeats.ccvector1.hh
pilot / brunette / extractNativeRepeats.ccio / ozstream.hh
pilot / brunette / filterAlignments.ccexit.hh
pilot / brunette / filterAlignments.ccstring_util.hh
pilot / brunette / filterAlignments.ccfile / FileName.hh
pilot / brunette / filterAlignments.ccfile / file_sys_util.hh
pilot / brunette / filterAlignments.ccio / ozstream.hh
pilot / brunette / filterAlignments.ccio / izstream.hh
pilot / brunette / filterAlignments.ccoptions / keys / FileOptionKey.fwd.hh
pilot / brunette / filterAlignments.ccoptions / keys / FileOptionKey.hh
pilot / brunette / filterAlignments.ccoptions / keys / BooleanOptionKey.fwd.hh
pilot / brunette / filterAlignments.ccoptions / keys / BooleanOptionKey.hh
pilot / brunette / filterImperfectAln.ccexit.hh
pilot / brunette / filterImperfectAln.ccstring_util.hh
pilot / brunette / filterImperfectAln.ccfile / FileName.hh
pilot / brunette / filterImperfectAln.ccfile / file_sys_util.hh
pilot / brunette / filterImperfectAln.ccio / ozstream.hh
pilot / brunette / filterImperfectAln.ccio / izstream.hh
pilot / brunette / filterImperfectAln.ccoptions / keys / FileOptionKey.fwd.hh
pilot / brunette / filterImperfectAln.ccoptions / keys / FileOptionKey.hh
pilot / brunette / filterImperfectAln.ccoptions / keys / FileVectorOptionKey.fwd.hh
pilot / brunette / filterImperfectAln.ccoptions / keys / FileVectorOptionKey.hh
pilot / brunette / findNaturallyOccuringAlphaRepeats.ccvector1.hh
pilot / brunette / findNaturallyOccuringAlphaRepeats.ccio / ozstream.hh
pilot / brunette / fragments_to_ss.ccio / ozstream.hh
pilot / brunette / hle_predict.ccio / ozstream.hh
pilot / brunette / minimalCstHomology.ccexit.hh
pilot / brunette / minimalCstHomology.ccstring_util.hh
pilot / brunette / minimalCstHomology.ccfile / FileName.hh
pilot / brunette / minimalCstHomology.ccfile / file_sys_util.hh
pilot / brunette / minimalCstHomology.ccio / ozstream.hh
pilot / brunette / minimalCstHomology.ccio / izstream.hh
pilot / brunette / minimalCstHomology.ccoptions / keys / FileOptionKey.fwd.hh
pilot / brunette / minimalCstHomology.ccoptions / keys / FileOptionKey.hh
pilot / brunette / minimalCstHomology.ccoptions / keys / FileVectorOptionKey.fwd.hh
pilot / brunette / minimalCstHomology.ccoptions / keys / FileVectorOptionKey.hh
pilot / brunette / minimalCstHomology.ccoptions / keys / BooleanOptionKey.fwd.hh
pilot / brunette / minimalCstHomology.ccoptions / keys / BooleanOptionKey.hh
pilot / brunette / minimalCstRelax.ccexit.hh
pilot / brunette / minimalCstRelax.ccstring_util.hh
pilot / brunette / minimalCstRelax.ccfile / FileName.hh
pilot / brunette / minimalCstRelax.ccfile / file_sys_util.hh
pilot / brunette / minimalCstRelax.ccio / ozstream.hh
pilot / brunette / minimalCstRelax.ccio / izstream.hh
pilot / brunette / minimalCstRelax.ccoptions / keys / FileOptionKey.fwd.hh
pilot / brunette / minimalCstRelax.ccoptions / keys / FileOptionKey.hh
pilot / brunette / minimalCstRelax.ccoptions / keys / FileVectorOptionKey.fwd.hh
pilot / brunette / minimalCstRelax.ccoptions / keys / FileVectorOptionKey.hh
pilot / brunette / outputAbego.ccvector1.hh
pilot / brunette / outputAbego.ccio / ozstream.hh
pilot / brunette / outputAbego.ccexcn / Exceptions.hh
pilot / brunette / outputLayerDesignBurial.ccvector1.hh
pilot / brunette / outputLayerDesignBurial.ccio / ozstream.hh
pilot / brunette / outputRama.ccvector1.hh
pilot / brunette / outputRama.ccio / ozstream.hh
pilot / brunette / outputSasa.ccvector1.hh
pilot / brunette / outputSasa.ccio / ozstream.hh
pilot / brunette / predictedCstFilter.ccvector1.hh
pilot / brunette / repeat_dock.ccstring_constants.hh
pilot / brunette / repeat_dock.ccvector1.hh
pilot / brunette / repeat_dock.ccio / ozstream.hh
pilot / brunette / silents_to_ss.ccio / ozstream.hh
pilot / brunette / tj_util.hhstring_util.hh
pilot / brunette / tj_util.hhfile / FileName.hh
pilot / brunette / tj_util.hhfile / file_sys_util.hh
pilot / brunette / unalignedEvaluate.ccexit.hh
pilot / brunette / unalignedEvaluate.ccstring_util.hh
pilot / brunette / unalignedEvaluate.ccfile / FileName.hh
pilot / brunette / unalignedEvaluate.ccfile / file_sys_util.hh
pilot / brunette / unalignedEvaluate.ccio / ozstream.hh
pilot / brunette / unalignedEvaluate.ccio / izstream.hh
pilot / brunette / unalignedEvaluate.ccoptions / keys / FileOptionKey.fwd.hh
pilot / brunette / unalignedEvaluate.ccoptions / keys / FileOptionKey.hh
pilot / brunette / unalignedEvaluate.ccoptions / keys / BooleanOptionKey.fwd.hh
pilot / brunette / unalignedEvaluate.ccoptions / keys / BooleanOptionKey.hh
public / carbohydrates / dock_glycans.ccpointer / owning_ptr.hh
public / carbohydrates / dock_glycans.ccvector1.hh
public / carbohydrates / dock_glycans.ccexcn / Exceptions.hh
public / carbohydrates / glycan_clash_check.ccexcn / Exceptions.hh
public / carbohydrates / glycan_clash_check.ccvector1.hh
public / carbohydrates / glycan_clash_check.ccstring_util.hh
public / carbohydrates / glycan_clash_check.ccstream_util.hh
public / carbohydrates / glycan_info.ccexcn / Exceptions.hh
public / carbohydrates / GlycanDock.ccexcn / Exceptions.hh
public / carbohydrates / GlycanDock.ccpointer / owning_ptr.hh
pilot / carbohydrates / basic_glycan_sampler.ccexcn / Exceptions.hh
pilot / carbohydrates / test_glycan_trees.ccexcn / Exceptions.hh
public / scenarios / chemically_conjugated_docking / Gp_extra_bodies.hhvector1.hh
public / scenarios / chemically_conjugated_docking / Gp_quantification_metrics.hhFixedSizeLexicographicalIterator.hh
public / scenarios / chemically_conjugated_docking / Gp_quantification_metrics.hhFixedSizeLexicographicalIterator.tmpl.hh
public / scenarios / chemically_conjugated_docking / Gp_quantification_metrics.hhfixedsizearray1.hh
public / scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccvector1.hh
public / scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccexit.hh
public / scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccexcn / Exceptions.hh
public / scenarios / chemically_conjugated_docking / UBQ_Gp_CYD-CYD.ccvector1.hh
public / scenarios / chemically_conjugated_docking / UBQ_Gp_CYD-CYD.ccexit.hh
public / scenarios / chemically_conjugated_docking / UBQ_Gp_CYD-CYD.ccexcn / Exceptions.hh
public / scenarios / chemically_conjugated_docking / UBQ_Gp_LYX-Cterm.ccexcn / Exceptions.hh
pilot / smlewis / ChemXRW / PDB_diagnostic.ccexcn / Exceptions.hh
pilot / chen / simple_dna_regression_test.ccvector1.hh
pilot / chrisk / byres_data.cctools / make_vector1.hh
pilot / chrisk / byres_data.cctools / make_map.hh
pilot / chrisk / byres_data.ccstring_util.hh
pilot / chrisk / domain_assemble.cctools / make_vector1.hh
pilot / chrisk / domain_assemble.cctools / make_map.hh
pilot / chrisk / domain_assemble.ccstring_util.hh
pilot / chrisk / hbscan.ccstring_util.hh
pilot / chrisk / hbscan.ccio / ozstream.hh
pilot / chrisk / pep_analysis.ccvector1.hh
pilot / chrisk / pep_gly.ccvector1.hh
pilot / chrisk / pep_nrg.ccvector1.hh
pilot / chrisk / pep_opt.ccvector1.hh
pilot / chrisk / pep_opt_parallel.ccvector1.hh
pilot / chrisk / pep_paapp.ccvector1.hh
pilot / chrisk / pep_prep.ccvector1.hh
pilot / chrisk / pep_prep.ccfile / FileName.hh
pilot / chrisk / pep_prepspec.ccvector1.hh
pilot / chrisk / pep_prepspec.ccfile / file_sys_util.hh
pilot / chrisk / pep_rama.ccvector1.hh
pilot / chrisk / pep_ref.ccvector1.hh
pilot / chrisk / pep_spec.03-11.ccvector1.hh
pilot / chrisk / pep_spec.06-23.ccvector1.hh
pilot / chrisk / pep_spec.06-23.ccfile / file_sys_util.hh
pilot / chrisk / pep_spec.ccvector1.hh
pilot / chrisk / pep_spec.ccfile / file_sys_util.hh
pilot / chrisk / pep_spec_flx.ccvector1.hh
pilot / chrisk / pep_spec_flx.ccfile / file_sys_util.hh
pilot / chrisk / pep_spec_flx.mov.ccvector1.hh
pilot / chrisk / pep_spec_flx.mov.ccfile / file_sys_util.hh
pilot / chrisk / pepspec.ccvector1.hh
pilot / chrisk / pepspec.ccfile / file_sys_util.hh
pilot / chrisk / pepspec_anchor_dock.ccvector1.hh
pilot / chrisk / pepspec_anchor_dock.ccfile / FileName.hh
pilot / chrisk / rotamer_repack.cctools / make_vector1.hh
pilot / chrisk / rotamer_repack.cctools / make_map.hh
pilot / christophe / PCS_main.ccio / izstream.hh
pilot / christophe / PCS_main.ccvector1.hh
pilot / christophe / PCS_main.ccio / util.hh
pilot / christophe / PCS_main.ccexit.hh
pilot / christophe / PCS_main.ccexcn / Exceptions.hh
pilot / chu / zinc_stat.ccfile / FileName.hh
pilot / chu / zinc_stat.ccio / izstream.hh
pilot / chu / zinc_stat.ccpointer / owning_ptr.hh
pilot / chu / zinc_stat.ccvector1.hh
pilot / jadolfbr / cluster_utilities / relax_cdrs.ccexcn / Exceptions.hh
public / clustering / calibur.ccstring_constants.hh
public / clustering / calibur.ccstring_util.hh
public / clustering / calibur.ccstream_util.hh
public / clustering / cluster.ccexcn / Exceptions.hh
public / clustering / energy_based_clustering.ccexcn / Exceptions.hh
pilot / cmiles / close_loops_ccd.ccvector1.hh
pilot / cmiles / kcluster.ccvector1.hh
pilot / cmiles / star_abinitio.ccexit.hh
pilot / cmiles / star_abinitio.ccexcn / Exceptions.hh
pilot / cmiles / windowed_rama.ccvector1.hh
pilot / cmiles / windowed_rmsd.ccvector1.hh
pilot / colin / backrub_pilot.ccio / ozstream.hh
pilot / colin / backrub_pilot.ccvector1.hh
pilot / colin / cterdesign.ccvector1.hh
pilot / colin / cterdesign.ccio / mpistream.hh
pilot / colin / ig_dump.ccfile / file_sys_util.hh
pilot / colin / ig_dump.ccio / ozstream.hh
pilot / colin / ig_dump.ccvector1.hh
pilot / colin / mm_params.ccvector1.hh
pilot / colin / mm_params.ccexcn / Exceptions.hh
pilot / combss / generate_orbital_statistics.ccfile / FileName.hh
pilot / combss / sequencerecovery.ccfile / file_sys_util.hh
pilot / combss / sequencerecovery.ccio / ozstream.hh
pilot / combss / sequencerecovery.ccvector1.hh
public / comparative_modeling / avrg_silent.ccexcn / Exceptions.hh
public / comparative_modeling / avrg_silent.ccvector1.hh
public / comparative_modeling / cluster_alns.ccexcn / Exceptions.hh
public / comparative_modeling / fast_gap.ccvector1.hh
public / comparative_modeling / fast_gap.ccio / ozstream.hh
public / comparative_modeling / fast_gap.ccexcn / Exceptions.hh
public / comparative_modeling / fix_alignment_to_match_pdb.ccvector1.hh
public / comparative_modeling / fix_alignment_to_match_pdb.ccstring_util.hh
public / comparative_modeling / fix_alignment_to_match_pdb.ccfile / file_sys_util.hh
public / comparative_modeling / fix_alignment_to_match_pdb.ccexcn / Exceptions.hh
public / comparative_modeling / fix_alignment_to_match_pdb.ccio / ozstream.hh
public / comparative_modeling / full_length_model.ccvector1.hh
public / comparative_modeling / full_length_model.ccio / ozstream.hh
public / comparative_modeling / full_length_model.ccexcn / Exceptions.hh
public / comparative_modeling / iterhybrid_selector.ccvector1.hh
public / comparative_modeling / iterhybrid_selector.ccexcn / Exceptions.hh
public / comparative_modeling / iterhybrid_selector.ccio / ozstream.hh
public / comparative_modeling / partial_thread.ccio / ozstream.hh
public / comparative_modeling / partial_thread.ccexcn / Exceptions.hh
public / comparative_modeling / partial_thread.ccvector1.hh
public / comparative_modeling / partial_thread.ccstring_util.hh
public / comparative_modeling / partial_thread.ccfile / file_sys_util.hh
public / comparative_modeling / score_aln.ccvector1.hh
public / comparative_modeling / score_aln.ccstring_util.hh
public / comparative_modeling / score_aln.ccfile / FileName.hh
public / comparative_modeling / score_aln.ccfile / file_sys_util.hh
public / comparative_modeling / score_aln.ccexcn / Exceptions.hh
public / comparative_modeling / score_aln.ccio / ozstream.hh
public / comparative_modeling / score_aln2.ccexit.hh
public / comparative_modeling / score_aln2.ccvector1.hh
public / comparative_modeling / score_aln2.ccstring_util.hh
public / comparative_modeling / score_aln2.ccfile / FileName.hh
public / comparative_modeling / score_aln2.ccfile / file_sys_util.hh
public / comparative_modeling / score_aln2.ccexcn / Exceptions.hh
public / comparative_modeling / score_aln2.ccio / ozstream.hh
public / comparative_modeling / spheregrinder.ccexcn / Exceptions.hh
public / comparative_modeling / super_aln.ccvector1.hh
public / comparative_modeling / super_aln.ccexcn / Exceptions.hh
public / comparative_modeling / template_features.ccvector1.hh
public / comparative_modeling / template_features.ccexcn / Exceptions.hh
public / comparative_modeling / validate_silent.ccexit.hh
public / comparative_modeling / validate_silent.ccexcn / Exceptions.hh
public / comparative_modeling / validate_silent.ccvector1.hh
pilot / csykang / make_retroinverso.ccexcn / Exceptions.hh
pilot / doug / cu_binder / make_peptoid.ccgraph / Graph.hh
pilot / doug / cu_binder / make_peptoid.ccio / izstream.hh
public / cyclic_peptide / count_cycpep_sequences.ccexcn / Exceptions.hh
public / cyclic_peptide / simple_cycpep_predict.ccexcn / Exceptions.hh
pilot / doug / cyclic_peptoid_peptide / cyclic_peptoid_peptide_test1.ccgraph / Graph.hh
pilot / doug / cyclic_peptoid_peptide / cyclic_peptoid_peptide_test1.ccio / izstream.hh
pilot / dan / generate_matcher_constraints.ccstring_util.hh
pilot / dan / loop_minimize.ccio / izstream.hh
pilot / dan / LoopExtend.ccexit.hh
pilot / dan / sidechain_min.ccio / izstream.hh
pilot / danpf / mmtf2pdb.ccexcn / Exceptions.hh
pilot / danpf / mmtf2pdb.ccfile / FileName.hh
pilot / danpf / mmtf2pdb.ccpointer / memory.hh
pilot / danpf / mmtf2pdb.ccio / ozstream.hh
pilot / danpf / mmtfs2mmtf.ccexcn / Exceptions.hh
pilot / danpf / mmtfs2mmtf.ccfile / FileName.hh
pilot / danpf / mmtfs2mmtf.ccpointer / memory.hh
public / darc / DARC.ccfile / file_sys_util.hh
public / darc / DARC.ccnumbers.hh
public / darc / make_ray_files.ccvector1.hh
public / darc / make_ray_files.ccoptions / StringOption.hh
public / ddg / cartesian_ddg.ccvector1.hh
public / ddg / cartesian_ddg.ccexit.hh
public / ddg / cartesian_ddg.ccexcn / Exceptions.hh
public / ddg / cartesian_ddg.ccfile / FileName.hh
public / ddg / cartesian_ddg.ccfile / file_sys_util.hh
public / ddg / cartesian_ddg.ccio / izstream.hh
public / ddg / cartesian_ddg.ccio / ozstream.hh
public / ddg / ddg_monomer.ccvector1.hh
public / ddg / ddg_monomer.ccexcn / Exceptions.hh
public / ddg / ensemble_generator_score12_sidechain_ver2.ccio / izstream.hh
public / ddg / ensemble_generator_score12_sidechain_ver2.ccfile / FileName.hh
public / ddg / ensemble_generator_score12_sidechain_ver2.ccvector1.hh
public / ddg / ensemble_generator_score12_sidechain_ver2.ccexcn / Exceptions.hh
public / ddg / minimize_with_cst.ccio / izstream.hh
public / ddg / minimize_with_cst.ccexcn / Exceptions.hh
public / ddg / minimize_with_cst.ccfile / FileName.hh
public / ddg / minimize_with_cst.ccfile / file_sys_util.hh
public / ddg / minimize_with_cst.ccvector1.hh
pilot / dekim / convert_to_centroid.ccexcn / Exceptions.hh
pilot / dekim / decoy_features.ccexit.hh
pilot / dekim / decoy_features.ccexcn / Exceptions.hh
pilot / dekim / extended_chain.ccexcn / Exceptions.hh
pilot / dekim / score_nonlocal_frags.ccexcn / Exceptions.hh
pilot / dekim / score_nonlocal_frags.ccexit.hh
pilot / dekim / score_nonlocal_frags.ccstring_util.hh
pilot / dekim / strand_pairings.ccexcn / Exceptions.hh
pilot / dekim / strand_pairings.ccvector1.hh
pilot / delucasl / generate_ligand_start_position_file.ccjson_spirit / json_spirit_writer.h
pilot / delucasl / generate_ligand_start_position_file.ccjson_spirit / json_spirit_writer_options.h
pilot / delucasl / generate_ligand_start_position_file.cctools / make_vector.hh
pilot / delucasl / generate_ligand_start_position_file.ccio / ozstream.hh
pilot / delucasl / ligands_to_database.ccsql_database / DatabaseSessionManager.fwd.hh
pilot / delucasl / ligands_to_database.ccvector1.hh
pilot / delucasl / params_tester.ccexcn / Exceptions.hh
pilot / delucasl / process_mdl.ccio / ozstream.hh
pilot / delucasl / process_mdl.ccio / izstream.hh
pilot / delucasl / process_mdl.ccstring_util.hh
pilot / delucasl / roc_optimizer.ccio / izstream.hh
pilot / delucasl / RotamerDump.ccvector1.hh
pilot / delucasl / simpleScore.ccvector0.hh
public / design / beta_peptide_modeling.ccvector1.hh
public / design / beta_peptide_modeling.ccexcn / Exceptions.hh
public / design / create_clash-based_repack_shell.ccvector1.hh
public / design / create_clash-based_repack_shell.ccexcn / Exceptions.hh
public / design / fixbb.ccexcn / Exceptions.hh
public / design / mpi_msd.ccmpi_util.hh
public / design / mpi_msd.ccstring_util.hh
public / design / mpi_msd.ccexcn / Exceptions.hh
public / design / mpi_msd.ccvector1.hh
public / design / mpi_msd.ccio / izstream.hh
public / design / mpi_msd.ccio / ozstream.hh
public / design / pmut_scan_parallel.ccfile / file_sys_util.hh
public / design / pmut_scan_parallel.ccvector1.hh
public / design / pmut_scan_parallel.ccexcn / Exceptions.hh
public / design / sequence_recovery.ccfile / file_sys_util.hh
public / design / sequence_recovery.ccio / ozstream.hh
public / design / sequence_recovery.ccvector1.hh
public / design / sequence_recovery.ccexcn / Exceptions.hh
public / design / sequence_recovery.ccgraph / UpperEdgeGraph.hh
public / design / supercharge.ccfile / FileName.hh
public / design / supercharge.ccio / ozstream.hh
public / design / supercharge.ccexcn / Exceptions.hh
public / design / supercharge.ccvector1.hh
public / design / supercharge.ccsort_predicates.hh
public / design / zinc1_homodimer_design.ccfile / FileName.hh
public / design / zinc1_homodimer_design.ccvector1.hh
public / design / zinc1_homodimer_design.ccexit.hh
public / design / zinc1_homodimer_setup.ccvector1.hh
public / design / zinc1_homodimer_setup.ccfile / FileName.hh
public / design / zinc2_homodimer_design.ccfile / FileName.hh
public / design / zinc2_homodimer_design.ccvector1.hh
public / design / zinc2_homodimer_setup.ccfile / FileName.hh
public / design / zinc2_homodimer_setup.ccvector1.hh
public / design / zinc_heterodimer_design.ccfile / FileName.hh
public / design / zinc_heterodimer_design.ccvector1.hh
pilot / kale / detailed_balance / backbone_tests.ccpointer / owning_ptr.hh
pilot / kale / detailed_balance / backbone_tests.ccpointer / access_ptr.hh
pilot / kale / detailed_balance / sidechain_tests.ccpointer / owning_ptr.hh
pilot / kale / detailed_balance / sidechain_tests.ccpointer / access_ptr.hh
pilot / dgront / DomainAssemblerNDocker.ccexit.hh
pilot / dgront / DomainAssemblerNDocker.ccio / izstream.hh
pilot / dgront / filters_in_abrelax.ccexcn / Exceptions.hh
pilot / dgront / hierarchical_clustering.ccexit.hh
pilot / dgront / hierarchical_clustering.ccio / izstream.hh
pilot / dgront / hierarchical_clustering.ccvector1.hh
pilot / dgront / hierarchical_clustering.ccexcn / Exceptions.hh
pilot / dgront / IndirectSorter.ccvector1.hh
pilot / dgront / JumpSpecificAbrelax.ccio / izstream.hh
pilot / dgront / JumpSpecificAbrelax.ccvector1.hh
pilot / dgront / JumpSpecificAbrelax.ccio / util.hh
pilot / dgront / LibraryJumpSetup.ccio / izstream.hh
pilot / dgront / LibraryJumpSetup.ccvector1.hh
pilot / dgront / LibraryJumpSetup.hhvector1.hh
pilot / dgront / LibraryJumpSetup.hhVirtualBase.hh
pilot / dgront / SaxsSampler.ccvector1.hh
pilot / dgront / SpecificJumpSetup.ccio / izstream.hh
pilot / dgront / SpecificJumpSetup.ccvector1.hh
pilot / dgront / SpecificJumpSetup.hhvector1.hh
pilot / dgront / SpecificJumpSetup.hhVirtualBase.hh
pilot / dgront / tnm_sampler.ccio / izstream.hh
pilot / dgront / tnm_sampler.ccexcn / Exceptions.hh
public / docking / docking_prepack_protocol.ccexcn / Exceptions.hh
public / docking / docking_protocol.ccvector1.hh
public / docking / docking_protocol.ccexcn / Exceptions.hh
pilot / doug / betacat_movie.ccpointer / owning_ptr.hh
pilot / doug / betacat_movie.ccexit.hh
pilot / doug / betacat_movie.ccvector1.hh
pilot / doug / betacat_movie.ccvector0.hh
pilot / doug / Cyclize.ccexcn / Exceptions.hh
pilot / doug / get_dihedral_peptide.ccgraph / Graph.hh
pilot / doug / get_dihedral_peptoid.ccgraph / Graph.hh
pilot / doug / make_peptoid.ccgraph / Graph.hh
pilot / doug / make_peptoid.ccio / izstream.hh
pilot / doug / make_peptoid_sequence.ccgraph / Graph.hh
pilot / doug / make_peptoid_sequence.ccio / izstream.hh
pilot / doug / noah_score_interface.ccvector1.hh
pilot / doug / number_of_residuetypes.ccexcn / Exceptions.hh
pilot / doug / peptoid_movie.ccpointer / owning_ptr.hh
pilot / doug / peptoid_movie.ccexit.hh
pilot / doug / peptoid_rotamer_prediction_benchmark.ccgraph / Graph.hh
pilot / doug / pymolmovertest.ccexcn / Exceptions.hh
pilot / doug / rotamer_prediction_benchmark.ccvector1.hh
pilot / doug / rotamer_prediction_benchmark.ccfile / FileName.hh
pilot / doug / rotamer_prediction_benchmark.ccexcn / Exceptions.hh
pilot / doug / score_min_rtmin_test.ccexcn / Exceptions.hh
pilot / doug / simple_relax.ccvector1.hh
pilot / doug / simple_relax.ccfile / FileName.hh
pilot / doug / simple_relax.ccexcn / Exceptions.hh
pilot / doug / test_chain_sequence.ccexcn / Exceptions.hh
public / DRRAFTER / drrafter_error_estimation.ccvector1.hh
public / DRRAFTER / drrafter_error_estimation.ccexcn / Exceptions.hh
public / DRRAFTER / drrafter_error_estimation.ccstream_util.hh
public / DRRAFTER / fit_helix_in_map.ccvector1.hh
public / DRRAFTER / fit_helix_in_map.ccexcn / Exceptions.hh
pilot / dwkulp / flexibleLoopDesign.ccexcn / Exceptions.hh
pilot / dwkulp / reportFragments.ccexcn / Exceptions.hh
public / electron_density / denovo_density.ccstring_util.hh
public / electron_density / denovo_density.ccfile / FileName.hh
public / electron_density / density_tools.ccvector1.hh
public / electron_density / dgdp.ccfile / file_sys_util.hh
public / electron_density / dgdp.ccfile / FileName.hh
public / electron_density / dgdp.ccio / izstream.hh
public / electron_density / dgdp.ccio / ozstream.hh
public / electron_density / dgdp.ccstring_util.hh
public / electron_density / dgdp.ccexcn / Exceptions.hh
public / electron_density / grower_prep.ccvector1.hh
public / electron_density / sim_cryo.ccfile / FileName.hh
public / electron_density / sim_cryo.ccfile / file_sys_util.hh
public / electron_density / sim_cryo.ccvector1.hh
public / enzdes / CstfileToTheozymePDB.ccexcn / Exceptions.hh
public / enzdes / enzyme_design.ccstring_util.hh
public / enzdes / enzyme_design.ccvector1.hh
public / enzdes / enzyme_design.ccfile / file_sys_util.hh
public / enzdes / enzyme_design.ccexcn / Exceptions.hh
public / rna / erraser / erraser2.ccfile / file_sys_util.hh
public / rna / erraser / erraser2.ccvector1.hh
public / rna / erraser / erraser2.ccvector1.functions.hh
public / rna / erraser / erraser2.ccexcn / Exceptions.hh
public / rna / erraser / erraser2.ccio / izstream.hh
public / rna / erraser / erraser2.ccstream_util.hh
public / rna / erraser / erraser_minimizer.ccexcn / Exceptions.hh
pilot / eva / adapt_rotamers.ccexcn / Exceptions.hh
pilot / kale / examples / chain_break.ccvector1.hh
pilot / kale / examples / features_reporter.ccvector1.hh
pilot / kale / examples / features_reporter.cctools / make_vector.hh
pilot / kale / examples / features_reporter.cctools / make_vector1.hh
pilot / kale / examples / features_reporter.ccpointer / owning_ptr.hh
pilot / kale / examples / features_reporter.ccsql_database / DatabaseSessionManager.hh
pilot / kale / examples / kic_rama_bias.ccvector1.hh
pilot / kale / examples / silent_output.ccvector1.hh
pilot / kale / examples / silent_output.cctools / make_vector1.hh
pilot / kale / examples / vector_math.ccvector1.hh
pilot / dgront / experiments / AllCrmsd.ccpointer / owning_ptr.hh
pilot / dgront / experiments / AllCrmsd.ccexcn / Exceptions.hh
pilot / dgront / experiments / call_mover.ccexcn / Exceptions.hh
pilot / dgront / experiments / call_rdc.ccexcn / Exceptions.hh
pilot / dgront / experiments / convert_frags.ccexcn / Exceptions.hh
pilot / dgront / experiments / CreatePose.ccio / izstream.hh
pilot / dgront / experiments / CreatePose.ccexcn / Exceptions.hh
pilot / dgront / experiments / DetailedScores.ccvector1.hh
pilot / dgront / experiments / DetailedScores.ccexcn / Exceptions.hh
pilot / dgront / experiments / DisulfideBondEnergy.ccexcn / Exceptions.hh
pilot / dgront / experiments / DumpConstraints.ccexcn / Exceptions.hh
pilot / dgront / experiments / GunnTest.ccvector1.hh
pilot / dgront / experiments / GunnTest.ccexcn / Exceptions.hh
pilot / dgront / experiments / print_options.ccexcn / Exceptions.hh
pilot / dgront / experiments / RDCTest.ccvector1.hh
pilot / dgront / experiments / RDCTest.ccio / izstream.hh
pilot / dgront / experiments / RDCTest.ccexcn / Exceptions.hh
pilot / dgront / experiments / read_profile.ccexcn / Exceptions.hh
pilot / dgront / experiments / TryScoreFilter.ccexit.hh
pilot / dgront / experiments / TryScoreFilter.ccio / izstream.hh
pilot / dgront / experiments / TryScoreFilter.ccexcn / Exceptions.hh
pilot / dgront / experiments / welde_chains.ccexcn / Exceptions.hh
pilot / fcchou / adenosine_stack_test.ccio / ozstream.hh
pilot / fcchou / adenosine_stack_test.ccvector1.hh
pilot / fcchou / adenosine_stack_test.ccio / izstream.hh
pilot / fcchou / adenosine_stack_test.ccexcn / Exceptions.hh
pilot / fcchou / lariat_modeling.ccvector1.hh
pilot / fcchou / lariat_modeling.cctools / make_vector1.hh
pilot / fcchou / lariat_modeling.ccexcn / Exceptions.hh
pilot / fcchou / non_natural_na.ccio / ozstream.hh
pilot / fcchou / non_natural_na.ccvector1.hh
pilot / fcchou / non_natural_na.ccexcn / Exceptions.hh
pilot / fcchou / rna_pdb_scoring.ccexcn / Exceptions.hh
pilot / fcchou / rna_pdb_scoring.ccvector1.hh
pilot / fcchou / rna_pdb_scoring.ccio / ozstream.hh
pilot / fcchou / rna_pdb_scoring.ccio / izstream.hh
pilot / fcchou / rotamer_test.ccexcn / Exceptions.hh
pilot / fcchou / rotamer_test.ccvector1.hh
pilot / fcchou / swa_rna_analytical_closure.ccvector1.hh
pilot / fcchou / swa_rna_analytical_closure.ccio / ozstream.hh
pilot / fcchou / swa_rna_analytical_closure.ccio / izstream.hh
pilot / fcchou / swa_rna_analytical_closure.ccexcn / Exceptions.hh
pilot / fcchou / thermal_sampler_alpha.ccvector1.hh
pilot / fcchou / thermal_sampler_alpha.ccexcn / Exceptions.hh
pilot / fcchou / turner_test_double_helix.ccvector1.hh
pilot / fcchou / turner_test_double_helix.ccio / ozstream.hh
pilot / fcchou / turner_test_double_helix.ccio / izstream.hh
pilot / fcchou / turner_test_double_helix.cctools / make_vector1.hh
pilot / fcchou / turner_test_double_helix.ccfile / file_sys_util.hh
pilot / fcchou / turner_test_double_helix.ccfile / gzip_util.hh
pilot / fcchou / turner_test_double_helix.ccexcn / Exceptions.hh
pilot / fcchou / turner_test_one_chain.ccvector1.hh
pilot / fcchou / turner_test_one_chain.ccio / ozstream.hh
pilot / fcchou / turner_test_one_chain.ccio / izstream.hh
pilot / fcchou / turner_test_one_chain.cctools / make_vector1.hh
pilot / fcchou / turner_test_one_chain.ccfile / file_sys_util.hh
pilot / fcchou / turner_test_one_chain.ccfile / gzip_util.hh
pilot / fcchou / turner_test_one_chain.ccexcn / Exceptions.hh
pilot / fcchou / turner_two_chain.ccvector1.hh
pilot / fcchou / turner_two_chain.ccio / ozstream.hh
pilot / fcchou / turner_two_chain.ccio / izstream.hh
pilot / fcchou / turner_two_chain.cctools / make_vector1.hh
pilot / fcchou / turner_two_chain.ccfile / file_sys_util.hh
pilot / fcchou / turner_two_chain.ccfile / gzip_util.hh
pilot / fcchou / turner_two_chain.ccexcn / Exceptions.hh
pilot / firas / check_burial.ccexcn / Exceptions.hh
public / flexpep_docking / BuildPeptide.ccvector1.hh
public / flexpep_docking / BuildPeptide.ccexcn / Exceptions.hh
public / flexpep_docking / FlexPepDocking.ccexcn / Exceptions.hh
pilot / flo / EnzdesFixBB.ccstring_util.hh
pilot / flo / EnzdesFixBB.ccvector1.hh
pilot / flo / EnzdesFixBB.ccfile / file_sys_util.hh
pilot / flo / EnzdesFixBB.ccexcn / Exceptions.hh
pilot / flo / SecondaryMatcher.ccfile / FileName.hh
pilot / flo / SecondaryMatcher.ccexcn / Exceptions.hh
pilot / fordas / dumpstubinteractions.ccexcn / Exceptions.hh
pilot / fordas / dumpstubinteractions.ccgraph / Graph.hh
pilot / fordas / lsmgridprobe.ccvector1.hh
pilot / fordas / lsmgridprobe.ccexcn / Exceptions.hh
pilot / dgront / fragmentpicker / diverse_fragments.ccvector1.hh
pilot / dgront / fragmentpicker / diverse_fragments.ccexcn / Exceptions.hh
pilot / dgront / fragmentpicker / diverse_fragments.ccio / mpistream.hh
pilot / dgront / fragmentpicker / fragmentpicker_integration_demo.ccvector1.hh
pilot / dgront / fragmentpicker / fragmentpicker_integration_demo.ccexcn / Exceptions.hh
pilot / dgront / fragmentpicker / picker.ccvector1.hh
pilot / dgront / fragmentpicker / picker.ccexcn / Exceptions.hh
pilot / dgront / fragmentpicker / picker.ccio / mpistream.hh
pilot / dgront / fragmentpicker / PickSSE.ccvector1.hh
pilot / dgront / fragmentpicker / PickSSE.ccexcn / Exceptions.hh
pilot / dgront / fragmentpicker / PickSSE.ccio / mpistream.hh
pilot / dgront / fragmentpicker / quotapicker_demo.ccvector1.hh
pilot / dgront / fragmentpicker / quotapicker_demo.ccio / mpistream.hh
pilot / dgront / fragmentpicker / quotapicker_demo.ccexcn / Exceptions.hh
pilot / dgront / fragmentpicker / rescore_fragments.ccvector1.hh
pilot / dgront / fragmentpicker / rescore_fragments.ccexcn / Exceptions.hh
pilot / dgront / fragmentpicker / rescore_fragments.ccio / mpistream.hh
pilot / ralford / archive / framework_devel / load_membrane_pose.ccpointer / owning_ptr.hh
pilot / ralford / archive / framework_devel / load_membrane_pose.ccexcn / Exceptions.hh
pilot / ralford / archive / framework_devel / local_minimize.ccvector1.hh
pilot / ralford / archive / framework_devel / local_minimize.ccexcn / Exceptions.hh
pilot / ralford / archive / framework_devel / local_minimize.ccpointer / owning_ptr.hh
pilot / ralford / archive / framework_devel / membrane_foldtree.ccVirtualBase.hh
pilot / ralford / archive / framework_devel / membrane_foldtree2.ccVirtualBase.hh
pilot / ralford / archive / framework_devel / membrane_info.ccVirtualBase.hh
pilot / ralford / archive / framework_devel / membrane_integration.ccVirtualBase.hh
pilot / ralford / archive / framework_devel / membrane_pose_test.ccVirtualBase.hh
pilot / ralford / archive / framework_devel / membrane_pose_test.ccstring_util.hh
pilot / ralford / archive / framework_devel / mp_database_check.ccvector1.hh
pilot / ralford / archive / framework_devel / mpframework_integration.ccVirtualBase.hh
pilot / ralford / archive / framework_devel / pymol_viewer_test.ccvector1.hh
pilot / ralford / archive / framework_devel / pymol_viewer_test.ccexcn / Exceptions.hh
pilot / ralford / archive / framework_devel / pymol_viewer_test.ccpointer / owning_ptr.hh
pilot / ralford / archive / framework_devel / virtual_residue_trees.ccVirtualBase.hh
pilot / ralford / archive / framework_devel / visualize_membrane.ccvector1.hh
pilot / ralford / archive / framework_devel / visualize_membrane.ccexcn / Exceptions.hh
pilot / ralford / archive / framework_devel / visualize_membrane.ccpointer / owning_ptr.hh
pilot / frank / autorb.ccexcn / Exceptions.hh
pilot / frank / calc_ssm_energies.ccvector1.hh
pilot / frank / calc_ssm_energies.ccfile / FileName.fwd.hh
pilot / frank / cart_refine.ccvector1.hh
pilot / frank / cart_refine.ccexcn / Exceptions.hh
pilot / frank / cen_relax.ccexcn / Exceptions.hh
pilot / frank / cryst_design.ccvector1.hh
pilot / frank / cryst_design.ccstring_util.hh
pilot / frank / cryst_design.ccfile / FileName.hh
pilot / frank / cryst_design.ccfile / file_sys_util.hh
pilot / frank / cryst_design.ccexcn / Exceptions.hh
pilot / frank / cryst_gen.ccvector1.hh
pilot / frank / cryst_gen.ccexcn / Exceptions.hh
pilot / frank / cryst_reporters.hhgraph / Graph.hh
pilot / frank / cryst_reporters.hhtools / make_map.hh
pilot / frank / dock_pdb_into_density.ccfile / FileName.hh
pilot / frank / dsrna_grow.ccexcn / Exceptions.hh
pilot / frank / dsrna_grow.ccstring_util.hh
pilot / frank / dsrna_grow.ccvector1.hh
pilot / frank / extract_silent.ccexcn / Exceptions.hh
pilot / frank / extract_silent.ccvector1.hh
pilot / frank / fasol_perres.ccvector1.hh
pilot / frank / fasol_perres.ccexcn / Exceptions.hh
pilot / frank / fpd_symmTest.ccexcn / Exceptions.hh
pilot / frank / make_rms_filtered_fragfile.ccexcn / Exceptions.hh
pilot / frank / map_morph.ccvector1.hh
pilot / frank / min_test.ccvector1.hh
pilot / frank / min_test.ccexcn / Exceptions.hh
pilot / frank / mirrorsymm_test.ccvector1.hh
pilot / frank / mirrorsymm_test.ccexcn / Exceptions.hh
pilot / frank / multimodel_gdt.ccvector1.hh
pilot / frank / multimodel_gdt.ccexcn / Exceptions.hh
pilot / frank / pdb_gen_cryst.ccvector1.hh
pilot / frank / pdb_gen_cryst.ccstring_constants.hh
pilot / frank / pdb_gen_cryst.ccexcn / Exceptions.hh
pilot / frank / pdb_to_map.ccexcn / Exceptions.hh
pilot / frank / per_atom_gradients.ccexcn / Exceptions.hh
pilot / frank / perturb_structure.ccexcn / Exceptions.hh
pilot / frank / pseudo_ca_trace.ccvector1.hh
pilot / frank / rb_rms.ccexit.hh
pilot / frank / rb_rms.ccfile / FileName.hh
pilot / frank / rb_rms.ccpointer / owning_ptr.hh
pilot / frank / rb_rms.ccexcn / Exceptions.hh
pilot / frank / RBSegMove.ccexcn / Exceptions.hh
pilot / frank / redesign_minimize_into_density.ccexcn / Exceptions.hh
pilot / frank / relax_viewer.ccexcn / Exceptions.hh
pilot / frank / spacegroup.hhvector1.hh
pilot / frankdt / concatenate_poses.ccio / ozstream.hh
pilot / frankdt / concatenate_poses.ccio / izstream.hh
pilot / frankdt / concatenate_poses.fwd.hhpointer / owning_ptr.hh
pilot / frankdt / concatenate_poses.hhVirtualBase.hh
pilot / frankdt / SmartSEWINGTester.fwd.hhpointer / owning_ptr.hh
pilot / frankdt / SmartSEWINGTester.hhVirtualBase.hh
pilot / frankdt / steric_fusion_scan.ccio / ozstream.hh
pilot / frankdt / steric_fusion_scan.ccio / izstream.hh
pilot / frankdt / steric_fusion_scan.fwd.hhpointer / owning_ptr.hh
pilot / frankdt / steric_fusion_scan.hhVirtualBase.hh
pilot / georgkuenze / spinlabel_activity.ccexcn / Exceptions.hh
pilot / georgkuenze / spinlabel_activity.ccstring_util.hh
pilot / georgkuenze / spinlabel_activity.ccvector1.hh
pilot / georgkuenze / spinlabel_activity.ccvector0.hh
pilot / georgkuenze / spinlabel_activity.ccgraph / Graph.fwd.hh
pilot / gideonla / CutOutDomain.ccexcn / Exceptions.hh
pilot / gktaylor / create_constraints.ccexcn / Exceptions.hh
pilot / gktaylor / score_pdb.ccexcn / Exceptions.hh
pilot / gktaylor / score_pdb.ccvector1.hh
pilot / gktaylor / score_pdb.ccfile / file_sys_util.hh
pilot / gktaylor / score_pdb.ccfile / FileName.hh
pilot / gktaylor / score_silent.ccvector1.hh
pilot / gktaylor / score_silent.ccfile / file_sys_util.hh
pilot / gktaylor / score_silent.ccexcn / Exceptions.hh
pilot / will / old / gpu / gpu_cbdock.ccio / izstream.hh
pilot / will / old / gpu / gpu_cbdock.ccio / ozstream.hh
pilot / will / old / gpu / gpu_linker.ccio / izstream.hh
pilot / will / old / gpu / gpu_linker.ccio / ozstream.hh
pilot / will / old / gpu / gpu_score.ccio / izstream.hh
pilot / will / old / gpu / gpu_score.ccio / ozstream.hh
pilot / will / old / gpu / gpu_test.ccio / izstream.hh
pilot / will / old / gpu / gpu_test.ccio / ozstream.hh
pilot / will / old / gpu / gpu_test_Mxform.ccio / izstream.hh
pilot / will / old / gpu / gpu_test_Mxform.ccio / ozstream.hh
pilot / grant / AbInitio_MPI.ccexit.hh
pilot / grant / AbInitio_MPI.ccexcn / Exceptions.hh
pilot / grant / DenovoProteinDesign_Test.ccfile / file_sys_util.hh
pilot / grant / DenovoProteinDesign_Test.ccassert.hh
pilot / grant / DenovoProteinDesign_Test.ccexcn / Exceptions.hh
pilot / grant / RedesignXtal_Silent.ccio / util.hh
pilot / grant / RedesignXtal_Silent.ccfile / file_sys_util.hh
pilot / grant / RedesignXtal_Silent.ccassert.hh
pilot / grant / RedesignXtal_Silent.ccexcn / Exceptions.hh
pilot / grant / RedesignXtal_Test.ccexcn / Exceptions.hh
pilot / grant / RedesignXtal_Test.ccfile / FileName.fwd.hh
pilot / guangfeng / align_substructure.ccoptions / FileVectorOption.hh
pilot / guangfeng / cryst_hbonds.ccvector1.hh
pilot / guangfeng / cryst_hbonds.ccfile / FileName.fwd.hh
pilot / guangfeng / ligand_docking_hbonds.ccvector1.hh
pilot / guangfeng / ligand_docking_hbonds.ccfile / FileName.fwd.hh
pilot / guangfeng / torsion_types.ccoptions / FileVectorOption.hh
pilot / guffysl / heme_binding.ccvector1.hh
pilot / guffysl / heme_binding.ccio / izstream.hh
pilot / guffysl / heme_binding.ccexcn / Exceptions.hh
pilot / guffysl / heme_replace.ccvector1.hh
pilot / guffysl / heme_replace.ccvector1.functions.hh
pilot / guffysl / HemeBindingMover.hhvector1.hh
pilot / habib / david_align_and_recompute_score_and_rmsd.ccvector1.hh
pilot / habib / david_align_and_recompute_score_and_rmsd.ccio / ozstream.hh
pilot / habib / david_align_and_recompute_score_and_rmsd.ccexcn / Exceptions.hh
pilot / habib / david_align_append_and_recompute_score_and_rmsd.ccvector1.hh
pilot / habib / david_align_append_and_recompute_score_and_rmsd.ccio / ozstream.hh
pilot / habib / david_align_append_and_recompute_score_and_rmsd.ccexcn / Exceptions.hh
pilot / habib / david_darc_multirun.ccvector1.hh
pilot / habib / david_darc_multirun.ccio / ozstream.hh
pilot / habib / david_darc_multirun.ccexcn / Exceptions.hh
pilot / habib / david_extract_dinucleotide_musashi_reference.ccexcn / Exceptions.hh
pilot / habib / david_extract_domain.ccexcn / Exceptions.hh
pilot / habib / david_fill_gaps.ccexcn / Exceptions.hh
pilot / habib / david_find_best_contact_pocket.ccexcn / Exceptions.hh
pilot / habib / david_find_best_pocket.ccexcn / Exceptions.hh
pilot / habib / david_find_complex_contacts.ccexcn / Exceptions.hh
pilot / habib / david_find_contacts.ccexcn / Exceptions.hh
pilot / habib / david_find_exemplar.ccvector1.hh
pilot / habib / david_find_pocket_exemplar.ccvector1.hh
pilot / habib / david_find_pocket_exemplar.ccio / ozstream.hh
pilot / habib / david_find_pocket_stabilizing_mutations.ccvector1.hh
pilot / habib / david_find_pocket_stabilizing_mutations.ccio / ozstream.hh
pilot / habib / david_find_pocket_stabilizing_mutations.ccexcn / Exceptions.hh
pilot / habib / david_find_surface_residues.ccvector1.hh
pilot / habib / david_find_surface_residues.ccexcn / Exceptions.hh
pilot / habib / david_open_pocket.ccvector1.hh
pilot / habib / david_open_pocket.ccio / ozstream.hh
pilot / habib / david_open_pocket.ccexcn / Exceptions.hh
pilot / habib / david_pocket2PDB.ccvector1.hh
pilot / habib / david_recompute_score_and_rmsd.ccvector1.hh
pilot / habib / david_recompute_score_and_rmsd.ccio / ozstream.hh
pilot / habib / david_recompute_score_and_rmsd.ccexcn / Exceptions.hh
pilot / habib / david_rotation_experiment.ccexcn / Exceptions.hh
public / helical_bundle / helical_bundle_predict.ccexcn / Exceptions.hh
public / helical_bundle / helical_bundle_predict.ccoptions / OptionCollection.hh
public / helical_bundle / helical_bundle_predict.ccpointer / memory.hh
pilot / hpark / collect_rotamer_contacts.ccvector1.hh
pilot / hpark / collect_rotamer_contacts.ccio / izstream.hh
pilot / hpark / min_test.ccvector1.hh
pilot / hpark / min_test_hpark.ccvector1.hh
pilot / hpark / mpi_refinement.ccexcn / Exceptions.hh
pilot / hpark / rama_energy.ccvector1.hh
pilot / hpark / rama_energy.ccio / izstream.hh
pilot / hpark / refit_rotamer_prob.ccvector1.hh
pilot / hpark / refit_rotamer_prob.ccio / izstream.hh
pilot / hpark / rescore_mutscan.ccvector1.hh
pilot / hpark / rescore_mutscan.ccio / izstream.hh
pilot / hpark / rescore_mutscan.ccstring_util.hh
pilot / hpark / rotamer_clash.ccvector1.hh
pilot / hpark / rotamer_clash.ccio / izstream.hh
pilot / hpark / rotamer_energy.ccvector1.hh
pilot / hpark / rotamer_energy.ccio / izstream.hh
pilot / hpark / sampling_movers.ccvector1.hh
pilot / hpark / sampling_movers.hhvector1.hh
pilot / hpark / sampling_utils.ccvector1.hh
pilot / hpark / sampling_utils.hhvector1.hh
pilot / hpark / switch_fa.ccio / izstream.hh
pilot / hpark / test_bbmc.ccio / ozstream.hh
pilot / hpark / test_bbmc.ccvector1.hh
pilot / hpark / test_bbmc.ccfile / file_sys_util.hh
pilot / hpark / test_bbmc.ccfile / FileName.hh
pilot / hpark / test_bbmc.ccexit.hh
pilot / hpark / test_bbmc.ccio / mpistream.hh
pilot / hpark / test_bbmc.org.ccio / ozstream.hh
pilot / hpark / test_bbmc.org.ccvector1.hh
pilot / hpark / test_bbmc.org.ccfile / file_sys_util.hh
pilot / hpark / test_bbmc.org.ccfile / FileName.hh
pilot / hpark / test_bbmc.org.ccexit.hh
pilot / hpark / test_bbmc.org.ccio / mpistream.hh
pilot / hpark / test_mm.ccstring_util.hh
pilot / hpark / test_mm.ccio / izstream.hh
pilot / hpark / test_mm.ccvector1.hh
pilot / hpark / test_sampling.ccvector1.hh
public / hydrate / hydrate.ccexcn / Exceptions.hh
pilot / ian / cluster_ligand_poses.ccexit.hh
pilot / ian / cluster_ligand_poses.ccfile / FileName.hh
pilot / ian / cluster_ligand_poses.ccio / ozstream.hh
pilot / ian / cluster_ligand_poses.ccpointer / owning_ptr.hh
pilot / ian / cluster_ligand_poses.ccexcn / Exceptions.hh
pilot / ian / ligand_evis.ccexit.hh
pilot / ian / ligand_evis.ccvector1.hh
pilot / ian / ligand_evis.ccvector1.functions.hh
pilot / ian / ligand_evis.ccfile / FileName.hh
pilot / ian / ligand_evis.ccio / ozstream.hh
pilot / ian / ligand_evis.cctools / make_vector1.hh
pilot / ian / ligand_evis.ccexcn / Exceptions.hh
pilot / ian / ligdock_confidence.ccexit.hh
pilot / ian / ligdock_confidence.ccfile / FileName.hh
pilot / ian / ligdock_confidence.ccio / ozstream.hh
pilot / ian / ligdock_confidence.ccpointer / owning_ptr.hh
pilot / ian / ligdock_confidence.cctools / make_vector1.hh
pilot / ian / ligdock_confidence.ccexcn / Exceptions.hh
pilot / ian / redo_rms_atomtree_diffs.ccexit.hh
pilot / ian / redo_rms_atomtree_diffs.ccfile / FileName.hh
pilot / ian / redo_rms_atomtree_diffs.ccio / ozstream.hh
pilot / ian / redo_rms_atomtree_diffs.ccpointer / owning_ptr.hh
pilot / ian / redo_rms_atomtree_diffs.ccexcn / Exceptions.hh
pilot / ian / select_best_unique_ligand_poses_jd1.ccfile / FileName.hh
pilot / ian / select_best_unique_ligand_poses_jd1.ccio / ozstream.hh
pilot / ian / select_best_unique_ligand_poses_jd1.ccpointer / owning_ptr.hh
pilot / ian / select_best_unique_ligand_poses_jd1.ccvector1.hh
pilot / ian / select_best_unique_ligand_poses_jd1.ccexcn / Exceptions.hh
pilot / kale / kic_refactor / ideas / original_app.ccpointer / owning_ptr.hh
pilot / kale / kic_refactor / ideas / original_app.ccpointer / access_ptr.hh
pilot / jackmaguire / benchmark_k_medoids.ccpointer / memory.hh
pilot / jackmaguire / benchmark_k_medoids.ccexcn / Exceptions.hh
pilot / jackmaguire / measure_sequence_similarity_to_native.ccexit.hh
pilot / jackmaguire / measure_sequence_similarity_to_native.ccexcn / Exceptions.hh
pilot / jackmaguire / measure_sequence_similarity_to_native.ccpointer / memory.hh
pilot / jackmaguire / tensorflow_manager_multi_input_test.ccexcn / Exceptions.hh
pilot / jackmaguire / tensorflow_manager_multirun_test.ccexcn / Exceptions.hh
pilot / jackmaguire / tensorflow_manager_test1.ccexcn / Exceptions.hh
pilot / jackmaguire / tensorflow_test2.ccexcn / Exceptions.hh
pilot / jackmaguire / test_rosetta_thread_manager_preallocation.ccexcn / Exceptions.hh
pilot / jacob / cxdesign.ccio / izstream.hh
pilot / jacob / cxdesign.ccio / ozstream.hh
pilot / jacob / cxdesign.ccexcn / Exceptions.hh
pilot / jacob / cxdock.ccio / izstream.hh
pilot / jacob / cxdock.ccio / ozstream.hh
pilot / jacob / cxdock.ccexcn / Exceptions.hh
pilot / jadolfbr / AddFrameworkProfilesOperation.fwd.hhpointer / owning_ptr.hh
pilot / jadolfbr / AddFrameworkProfilesOperation.hhvector1.hh
pilot / jadolfbr / AntibodyDesignMoverGenerator.ccfile / FileName.hh
pilot / jadolfbr / AntibodyDesignMoverGenerator.fwd.hhpointer / owning_ptr.hh
pilot / jadolfbr / AntibodyDesignMoverGenerator.hhvector1.hh
pilot / jadolfbr / AntibodyDesignMoverGenerator.hhVirtualBase.hh
pilot / jadolfbr / AntibodyInfoRMLoader.ccexcn / Exceptions.hh
pilot / jadolfbr / AntibodyInfoRMLoader.ccstring_util.hh
pilot / jadolfbr / AntibodyInfoRMLoader.ccvector1.hh
pilot / jadolfbr / AntibodyInfoRMLoader.fwd.hhpointer / owning_ptr.hh
pilot / jadolfbr / AntibodyInfoRMLoader.hhVirtualBase.hh
pilot / jadolfbr / AntibodyInfoRMOptions.cctag / Tag.hh
pilot / jadolfbr / AntibodyInfoRMOptions.fwd.hhpointer / owning_ptr.hh
pilot / jadolfbr / AntibodyInfoRMOptions.hhVirtualBase.hh
pilot / jadolfbr / AntibodyInfoRMOptions.hhtag / Tag.fwd.hh
pilot / jadolfbr / AntibodyInfoRMOptionsCreator.hhVirtualBase.hh
pilot / jadolfbr / AntibodyInfoRMOptionsCreator.hhtag / Tag.fwd.hh
pilot / jadolfbr / model_antibody_basic.ccvector1.hh
pilot / jadolfbr / test_neighborhood_selector.ccexcn / Exceptions.hh
pilot / jadolfbr / test_neighborhood_selector.ccoptions / OptionCollection.hh
pilot / jadolfbr / test_neighborhood_selector.ccstring_util.hh
pilot / jadolfbr / test_symmetry.ccexcn / Exceptions.hh
pilot / jadolfbr / test_symmetry.ccoptions / OptionCollection.hh
pilot / jadolfbr / test_symmetry.ccstring_util.hh
pilot / james / add_ligand.ccexcn / Exceptions.hh
pilot / james / analyze_casp9.ccvector1.hh
pilot / james / analyze_casp9.ccexcn / Exceptions.hh
pilot / james / angle_recovery_stats.ccvector1.hh
pilot / james / angle_recovery_stats.ccexcn / Exceptions.hh
pilot / james / angles.ccvector1.hh
pilot / james / angles.ccexcn / Exceptions.hh
pilot / james / anneal_align.ccexit.hh
pilot / james / anneal_align.ccvector1.hh
pilot / james / anneal_align.ccio / izstream.hh
pilot / james / anneal_align.ccexcn / Exceptions.hh
pilot / james / assemble_domains_jd2.ccvector1.hh
pilot / james / assemble_domains_jd2.ccexcn / Exceptions.hh
pilot / james / basic_thread.ccvector1.hh
pilot / james / basic_thread.ccstring_util.hh
pilot / james / basic_thread.ccexcn / Exceptions.hh
pilot / james / boost_hacks.ccvector1.hh
pilot / james / boost_hacks.ccexcn / Exceptions.hh
pilot / james / build_template.ccvector1.hh
pilot / james / build_template.ccfile / file_sys_util.hh
pilot / james / build_template.ccfile / FileName.hh
pilot / james / build_template.ccexcn / Exceptions.hh
pilot / james / burial.ccvector1.hh
pilot / james / burial.ccexcn / Exceptions.hh
pilot / james / ca_build.ccvector1.hh
pilot / james / ca_build.ccio / izstream.hh
pilot / james / ca_build.ccio / ozstream.hh
pilot / james / ca_build.ccfile / FileName.hh
pilot / james / ca_build.ccfile / file_sys_util.hh
pilot / james / ca_build.ccexcn / Exceptions.hh
pilot / james / cartesian.ccvector1.hh
pilot / james / cartesian.ccexcn / Exceptions.hh
pilot / james / casp9_superdev.ccvector1.hh
pilot / james / casp9_superdev.ccio / ozstream.hh
pilot / james / casp9_superdev.ccexcn / Exceptions.hh
pilot / james / compare_features.ccvector1.hh
pilot / james / compare_features.ccexcn / Exceptions.hh
pilot / james / constraints_matrix.ccvector1.hh
pilot / james / constraints_matrix.ccexcn / Exceptions.hh
pilot / james / constraints_viewer.ccio / izstream.hh
pilot / james / constraints_viewer.ccio / ozstream.hh
pilot / james / constraints_viewer.ccexit.hh
pilot / james / constraints_viewer.ccvector1.hh
pilot / james / constraints_viewer.ccfile / file_sys_util.hh
pilot / james / constraints_viewer.ccexcn / Exceptions.hh
pilot / james / copy_hack.ccexcn / Exceptions.hh
pilot / james / cs_align.ccvector1.hh
pilot / james / cs_align.ccio / izstream.hh
pilot / james / cs_align.ccio / ozstream.hh
pilot / james / cs_align.ccfile / FileName.hh
pilot / james / cs_align.ccfile / file_sys_util.hh
pilot / james / cs_align.ccexcn / Exceptions.hh
pilot / james / cst_func.ccexit.hh
pilot / james / cst_func.ccvector1.hh
pilot / james / cst_func.ccio / ozstream.hh
pilot / james / cst_func.ccfile / file_sys_util.hh
pilot / james / cst_func.ccexcn / Exceptions.hh
pilot / james / cst_quality.ccvector1.hh
pilot / james / cst_quality.ccnumbers.hh
pilot / james / cst_quality.ccexcn / Exceptions.hh
pilot / james / density_grid.ccvector1.hh
pilot / james / density_grid.ccstring_util.hh
pilot / james / density_grid.ccio / izstream.hh
pilot / james / density_grid.ccio / ozstream.hh
pilot / james / density_grid.ccfile / FileName.hh
pilot / james / density_grid.ccexcn / Exceptions.hh
pilot / james / design_profile.ccexcn / Exceptions.hh
pilot / james / distances.ccvector1.hh
pilot / james / distances.ccexcn / Exceptions.hh
pilot / james / dp_align.ccvector1.hh
pilot / james / dp_align.ccfile / FileName.hh
pilot / james / dp_align.ccexcn / Exceptions.hh
pilot / james / exhaustive_align.ccvector1.hh
pilot / james / exhaustive_align.ccio / ozstream.hh
pilot / james / exhaustive_align.ccfile / FileName.hh
pilot / james / exhaustive_align.ccexcn / Exceptions.hh
pilot / james / fast_cm.ccexcn / Exceptions.hh
pilot / james / filter_sequences.ccio / izstream.hh
pilot / james / filter_sequences.ccio / ozstream.hh
pilot / james / filter_sequences.ccvector1.hh
pilot / james / filter_sequences.ccfile / FileName.hh
pilot / james / filter_sequences.ccfile / file_sys_util.hh
pilot / james / filter_sequences.ccexcn / Exceptions.hh
pilot / james / hybrid.ccexit.hh
pilot / james / hybrid.ccvector1.hh
pilot / james / hybrid.ccstring_util.hh
pilot / james / hybrid.ccfile / FileName.hh
pilot / james / hybrid.ccfile / file_sys_util.hh
pilot / james / hybrid.ccio / mpistream.hh
pilot / james / hybrid.ccio / ozstream.hh
pilot / james / hybrid.ccexcn / Exceptions.hh
pilot / james / james_util.hhvector1.hh
pilot / james / james_util.hhio / izstream.hh
pilot / james / james_util.hhfile / FileName.hh
pilot / james / james_util.hhfile / file_sys_util.hh
pilot / james / jcluster.ccvector1.hh
pilot / james / jcluster.ccexcn / Exceptions.hh
pilot / james / jdock.ccexcn / Exceptions.hh
pilot / james / jidealize.ccexcn / Exceptions.hh
pilot / james / jrelax.ccexcn / Exceptions.hh
pilot / james / jscore.ccexcn / Exceptions.hh
pilot / james / jseq.ccvector1.hh
pilot / james / jseq.ccexcn / Exceptions.hh
pilot / james / kdtree_disulf.ccvector1.hh
pilot / james / kdtree_disulf.ccio / izstream.hh
pilot / james / kdtree_disulf.ccio / ozstream.hh
pilot / james / kdtree_disulf.ccexcn / Exceptions.hh
pilot / james / make_artificial_centroids.ccvector1.hh
pilot / james / make_artificial_centroids.ccexcn / Exceptions.hh
pilot / james / make_profile.ccio / izstream.hh
pilot / james / make_profile.ccio / ozstream.hh
pilot / james / make_profile.ccvector1.hh
pilot / james / make_profile.ccfile / FileName.hh
pilot / james / make_profile.ccfile / file_sys_util.hh
pilot / james / make_profile.ccexcn / Exceptions.hh
pilot / james / mammoth_hack.ccvector1.hh
pilot / james / mammoth_hack.ccstream_util.hh
pilot / james / mammoth_hack.ccBound.fwd.hh
pilot / james / mammoth_hack.ccBound.hh
pilot / james / mammoth_hack.ccdown_cast.hh
pilot / james / mammoth_hack.ccexit.hh
pilot / james / mammoth_hack.ccvector1.fwd.hh
pilot / james / mammoth_hack.ccvector1_bool.hh
pilot / james / mammoth_hack.ccvectorL.fwd.hh
pilot / james / mammoth_hack.ccvectorL.hh
pilot / james / mammoth_hack.ccvectorL_Selector.hh
pilot / james / mammoth_hack.ccvectorL_bool.hh
pilot / james / mammoth_hack.ccfile / FileName.fwd.hh
pilot / james / mammoth_hack.ccfile / FileName.hh
pilot / james / mammoth_hack.ccfile / PathName.fwd.hh
pilot / james / mammoth_hack.ccfile / PathName.hh
pilot / james / mammoth_hack.ccio / izstream.fwd.hh
pilot / james / mammoth_hack.cckeys / AutoKey.fwd.hh
pilot / james / mammoth_hack.cckeys / AutoKey.hh
pilot / james / mammoth_hack.cckeys / Key.fwd.hh
pilot / james / mammoth_hack.cckeys / Key.hh
pilot / james / mammoth_hack.cckeys / Key2Tuple.fwd.hh
pilot / james / mammoth_hack.cckeys / Key2Tuple.hh
pilot / james / mammoth_hack.cckeys / Key3Tuple.fwd.hh
pilot / james / mammoth_hack.cckeys / Key3Tuple.hh
pilot / james / mammoth_hack.cckeys / Key4Tuple.fwd.hh
pilot / james / mammoth_hack.cckeys / Key4Tuple.hh
pilot / james / mammoth_hack.cckeys / KeyLess.fwd.hh
pilot / james / mammoth_hack.cckeys / KeyLookup.fwd.hh
pilot / james / mammoth_hack.cckeys / KeyLookup.hh
pilot / james / mammoth_hack.cckeys / NoClient.fwd.hh
pilot / james / mammoth_hack.cckeys / NoClient.hh
pilot / james / mammoth_hack.cckeys / SmallKeyVector.fwd.hh
pilot / james / mammoth_hack.cckeys / SmallKeyVector.hh
pilot / james / mammoth_hack.cckeys / UserKey.fwd.hh
pilot / james / mammoth_hack.cckeys / VariantKey.fwd.hh
pilot / james / mammoth_hack.cckeys / VariantKey.hh
pilot / james / mammoth_hack.ccoptions / AnyOption.fwd.hh
pilot / james / mammoth_hack.ccoptions / AnyOption.hh
pilot / james / mammoth_hack.ccoptions / AnyVectorOption.fwd.hh
pilot / james / mammoth_hack.ccoptions / AnyVectorOption.hh
pilot / james / mammoth_hack.ccoptions / BooleanOption.fwd.hh
pilot / james / mammoth_hack.ccoptions / BooleanOption.hh
pilot / james / mammoth_hack.ccoptions / BooleanVectorOption.fwd.hh
pilot / james / mammoth_hack.ccoptions / BooleanVectorOption.hh
pilot / james / mammoth_hack.ccoptions / FileOption.fwd.hh
pilot / james / mammoth_hack.ccoptions / FileOption.hh
pilot / james / mammoth_hack.ccoptions / FileVectorOption.fwd.hh
pilot / james / mammoth_hack.ccoptions / FileVectorOption.hh
pilot / james / mammoth_hack.ccoptions / IntegerOption.fwd.hh
pilot / james / mammoth_hack.ccoptions / IntegerOption.hh
pilot / james / mammoth_hack.ccoptions / IntegerVectorOption.fwd.hh
pilot / james / mammoth_hack.ccoptions / IntegerVectorOption.hh
pilot / james / mammoth_hack.ccoptions / Option.fwd.hh
pilot / james / mammoth_hack.ccoptions / Option.hh
pilot / james / mammoth_hack.ccoptions / OptionCollection.fwd.hh
pilot / james / mammoth_hack.ccoptions / OptionCollection.hh
pilot / james / mammoth_hack.ccoptions / PathOption.fwd.hh
pilot / james / mammoth_hack.ccoptions / PathOption.hh
pilot / james / mammoth_hack.ccoptions / PathVectorOption.fwd.hh
pilot / james / mammoth_hack.ccoptions / PathVectorOption.hh
pilot / james / mammoth_hack.ccoptions / RealOption.fwd.hh
pilot / james / mammoth_hack.ccoptions / RealOption.hh
pilot / james / mammoth_hack.ccoptions / RealVectorOption.fwd.hh
pilot / james / mammoth_hack.ccoptions / RealVectorOption.hh
pilot / james / mammoth_hack.ccoptions / ScalarOption.fwd.hh
pilot / james / mammoth_hack.ccoptions / ScalarOption.hh
pilot / james / mammoth_hack.ccoptions / ScalarOption_T_.fwd.hh
pilot / james / mammoth_hack.ccoptions / ScalarOption_T_.hh
pilot / james / mammoth_hack.ccoptions / StringOption.fwd.hh
pilot / james / mammoth_hack.ccoptions / StringOption.hh
pilot / james / mammoth_hack.ccoptions / StringVectorOption.fwd.hh
pilot / james / mammoth_hack.ccoptions / StringVectorOption.hh
pilot / james / mammoth_hack.ccoptions / VariantOption.fwd.hh
pilot / james / mammoth_hack.ccoptions / VariantOption.hh
pilot / james / mammoth_hack.ccoptions / VectorOption.fwd.hh
pilot / james / mammoth_hack.ccoptions / VectorOption.hh
pilot / james / mammoth_hack.ccoptions / VectorOption_T_.fwd.hh
pilot / james / mammoth_hack.ccoptions / VectorOption_T_.hh
pilot / james / mammoth_hack.ccoptions / mpi_stderr.hh
pilot / james / mammoth_hack.ccoptions / keys / AnyOptionKey.fwd.hh
pilot / james / mammoth_hack.ccoptions / keys / AnyOptionKey.hh
pilot / james / mammoth_hack.ccoptions / keys / AnyVectorOptionKey.fwd.hh
pilot / james / mammoth_hack.ccoptions / keys / AnyVectorOptionKey.hh
pilot / james / mammoth_hack.ccoptions / keys / BooleanOptionKey.fwd.hh
pilot / james / mammoth_hack.ccoptions / keys / BooleanOptionKey.hh
pilot / james / mammoth_hack.ccoptions / keys / BooleanVectorOptionKey.fwd.hh
pilot / james / mammoth_hack.ccoptions / keys / BooleanVectorOptionKey.hh
pilot / james / mammoth_hack.ccoptions / keys / FileOptionKey.fwd.hh
pilot / james / mammoth_hack.ccoptions / keys / FileOptionKey.hh
pilot / james / mammoth_hack.ccoptions / keys / FileVectorOptionKey.fwd.hh
pilot / james / mammoth_hack.ccoptions / keys / FileVectorOptionKey.hh
pilot / james / mammoth_hack.ccoptions / keys / IntegerOptionKey.fwd.hh
pilot / james / mammoth_hack.ccoptions / keys / IntegerOptionKey.hh
pilot / james / mammoth_hack.ccoptions / keys / IntegerVectorOptionKey.fwd.hh
pilot / james / mammoth_hack.ccoptions / keys / IntegerVectorOptionKey.hh
pilot / james / mammoth_hack.ccoptions / keys / OptionKey.fwd.hh
pilot / james / mammoth_hack.ccoptions / keys / OptionKey.hh
pilot / james / mammoth_hack.ccoptions / keys / OptionKeys.hh
pilot / james / mammoth_hack.ccoptions / keys / PathOptionKey.fwd.hh
pilot / james / mammoth_hack.ccoptions / keys / PathOptionKey.hh
pilot / james / mammoth_hack.ccoptions / keys / PathVectorOptionKey.fwd.hh
pilot / james / mammoth_hack.ccoptions / keys / PathVectorOptionKey.hh
pilot / james / mammoth_hack.ccoptions / keys / RealOptionKey.fwd.hh
pilot / james / mammoth_hack.ccoptions / keys / RealOptionKey.hh
pilot / james / mammoth_hack.ccoptions / keys / RealVectorOptionKey.fwd.hh
pilot / james / mammoth_hack.ccoptions / keys / RealVectorOptionKey.hh
pilot / james / mammoth_hack.ccoptions / keys / ScalarOptionKey.fwd.hh
pilot / james / mammoth_hack.ccoptions / keys / ScalarOptionKey.hh
pilot / james / mammoth_hack.ccoptions / keys / StringOptionKey.fwd.hh
pilot / james / mammoth_hack.ccoptions / keys / StringOptionKey.hh
pilot / james / mammoth_hack.ccoptions / keys / StringVectorOptionKey.fwd.hh
pilot / james / mammoth_hack.ccoptions / keys / StringVectorOptionKey.hh
pilot / james / mammoth_hack.ccoptions / keys / VectorOptionKey.fwd.hh
pilot / james / mammoth_hack.ccoptions / keys / VectorOptionKey.hh
pilot / james / mammoth_hack.ccoptions / keys / all.hh
pilot / james / mammoth_hack.ccVirtualBase.fwd.hh
pilot / james / mammoth_hack.ccVirtualBase.hh
pilot / james / mammoth_hack.ccpointer / access_ptr.hh
pilot / james / mammoth_hack.ccpointer / owning_ptr.hh
pilot / james / mammoth_hack.ccsignals / BufferedSignalHub.fwd.hh
pilot / james / mammoth_hack.ccsignals / BufferedSignalHub.hh
pilot / james / mammoth_hack.ccsignals / Link.fwd.hh
pilot / james / mammoth_hack.ccsignals / Link.hh
pilot / james / mammoth_hack.ccsignals / LinkUnit.fwd.hh
pilot / james / mammoth_hack.ccsignals / LinkUnit.hh
pilot / james / mammoth_hack.ccsignals / SignalHub.fwd.hh
pilot / james / mammoth_hack.ccsignals / SignalHub.hh
pilot / james / mammoth_hack.ccexcn / Exceptions.hh
pilot / james / medal_test.ccvector1.hh
pilot / james / medal_test.ccio / ozstream.hh
pilot / james / medal_test.ccexcn / Exceptions.hh
pilot / james / min_cst.ccvector1.hh
pilot / james / min_cst.ccio / ozstream.hh
pilot / james / min_cst.ccexcn / Exceptions.hh
pilot / james / model_quality.ccvector1.hh
pilot / james / model_quality.ccBound.fwd.hh
pilot / james / model_quality.ccBound.hh
pilot / james / model_quality.ccdown_cast.hh
pilot / james / model_quality.ccexit.hh
pilot / james / model_quality.ccvector1.fwd.hh
pilot / james / model_quality.ccvector1_bool.hh
pilot / james / model_quality.ccvectorL.fwd.hh
pilot / james / model_quality.ccvectorL.hh
pilot / james / model_quality.ccvectorL_Selector.hh
pilot / james / model_quality.ccvectorL_bool.hh
pilot / james / model_quality.ccfile / FileName.fwd.hh
pilot / james / model_quality.ccfile / FileName.hh
pilot / james / model_quality.ccfile / PathName.fwd.hh
pilot / james / model_quality.ccfile / PathName.hh
pilot / james / model_quality.cckeys / AutoKey.fwd.hh
pilot / james / model_quality.cckeys / AutoKey.hh
pilot / james / model_quality.cckeys / Key.fwd.hh
pilot / james / model_quality.cckeys / Key.hh
pilot / james / model_quality.cckeys / Key2Tuple.fwd.hh
pilot / james / model_quality.cckeys / Key2Tuple.hh
pilot / james / model_quality.cckeys / Key3Tuple.fwd.hh
pilot / james / model_quality.cckeys / Key3Tuple.hh
pilot / james / model_quality.cckeys / Key4Tuple.fwd.hh
pilot / james / model_quality.cckeys / Key4Tuple.hh
pilot / james / model_quality.cckeys / KeyLess.fwd.hh
pilot / james / model_quality.cckeys / KeyLookup.fwd.hh
pilot / james / model_quality.cckeys / KeyLookup.hh
pilot / james / model_quality.cckeys / NoClient.fwd.hh
pilot / james / model_quality.cckeys / NoClient.hh
pilot / james / model_quality.cckeys / SmallKeyVector.fwd.hh
pilot / james / model_quality.cckeys / SmallKeyVector.hh
pilot / james / model_quality.cckeys / UserKey.fwd.hh
pilot / james / model_quality.cckeys / VariantKey.fwd.hh
pilot / james / model_quality.cckeys / VariantKey.hh
pilot / james / model_quality.ccoptions / AnyOption.fwd.hh
pilot / james / model_quality.ccoptions / AnyOption.hh
pilot / james / model_quality.ccoptions / AnyVectorOption.fwd.hh
pilot / james / model_quality.ccoptions / AnyVectorOption.hh
pilot / james / model_quality.ccoptions / BooleanOption.fwd.hh
pilot / james / model_quality.ccoptions / BooleanOption.hh
pilot / james / model_quality.ccoptions / BooleanVectorOption.fwd.hh
pilot / james / model_quality.ccoptions / BooleanVectorOption.hh
pilot / james / model_quality.ccoptions / FileOption.fwd.hh
pilot / james / model_quality.ccoptions / FileOption.hh
pilot / james / model_quality.ccoptions / FileVectorOption.fwd.hh
pilot / james / model_quality.ccoptions / FileVectorOption.hh
pilot / james / model_quality.ccoptions / IntegerOption.fwd.hh
pilot / james / model_quality.ccoptions / IntegerOption.hh
pilot / james / model_quality.ccoptions / IntegerVectorOption.fwd.hh
pilot / james / model_quality.ccoptions / IntegerVectorOption.hh
pilot / james / model_quality.ccoptions / Option.fwd.hh
pilot / james / model_quality.ccoptions / Option.hh
pilot / james / model_quality.ccoptions / OptionCollection.fwd.hh
pilot / james / model_quality.ccoptions / OptionCollection.hh
pilot / james / model_quality.ccoptions / PathOption.fwd.hh
pilot / james / model_quality.ccoptions / PathOption.hh
pilot / james / model_quality.ccoptions / PathVectorOption.fwd.hh
pilot / james / model_quality.ccoptions / PathVectorOption.hh
pilot / james / model_quality.ccoptions / RealOption.fwd.hh
pilot / james / model_quality.ccoptions / RealOption.hh
pilot / james / model_quality.ccoptions / RealVectorOption.fwd.hh
pilot / james / model_quality.ccoptions / RealVectorOption.hh
pilot / james / model_quality.ccoptions / ScalarOption.fwd.hh
pilot / james / model_quality.ccoptions / ScalarOption.hh
pilot / james / model_quality.ccoptions / ScalarOption_T_.fwd.hh
pilot / james / model_quality.ccoptions / ScalarOption_T_.hh
pilot / james / model_quality.ccoptions / StringOption.fwd.hh
pilot / james / model_quality.ccoptions / StringOption.hh
pilot / james / model_quality.ccoptions / StringVectorOption.fwd.hh
pilot / james / model_quality.ccoptions / StringVectorOption.hh
pilot / james / model_quality.ccoptions / VariantOption.fwd.hh
pilot / james / model_quality.ccoptions / VariantOption.hh
pilot / james / model_quality.ccoptions / VectorOption.fwd.hh
pilot / james / model_quality.ccoptions / VectorOption.hh
pilot / james / model_quality.ccoptions / VectorOption_T_.fwd.hh
pilot / james / model_quality.ccoptions / VectorOption_T_.hh
pilot / james / model_quality.ccoptions / mpi_stderr.hh
pilot / james / model_quality.ccoptions / keys / AnyOptionKey.fwd.hh
pilot / james / model_quality.ccoptions / keys / AnyOptionKey.hh
pilot / james / model_quality.ccoptions / keys / AnyVectorOptionKey.fwd.hh
pilot / james / model_quality.ccoptions / keys / AnyVectorOptionKey.hh
pilot / james / model_quality.ccoptions / keys / BooleanOptionKey.fwd.hh
pilot / james / model_quality.ccoptions / keys / BooleanOptionKey.hh
pilot / james / model_quality.ccoptions / keys / BooleanVectorOptionKey.fwd.hh
pilot / james / model_quality.ccoptions / keys / BooleanVectorOptionKey.hh
pilot / james / model_quality.ccoptions / keys / FileOptionKey.fwd.hh
pilot / james / model_quality.ccoptions / keys / FileOptionKey.hh
pilot / james / model_quality.ccoptions / keys / FileVectorOptionKey.fwd.hh
pilot / james / model_quality.ccoptions / keys / FileVectorOptionKey.hh
pilot / james / model_quality.ccoptions / keys / IntegerOptionKey.fwd.hh
pilot / james / model_quality.ccoptions / keys / IntegerOptionKey.hh
pilot / james / model_quality.ccoptions / keys / IntegerVectorOptionKey.fwd.hh
pilot / james / model_quality.ccoptions / keys / IntegerVectorOptionKey.hh
pilot / james / model_quality.ccoptions / keys / OptionKey.fwd.hh
pilot / james / model_quality.ccoptions / keys / OptionKey.hh
pilot / james / model_quality.ccoptions / keys / OptionKeys.hh
pilot / james / model_quality.ccoptions / keys / PathOptionKey.fwd.hh
pilot / james / model_quality.ccoptions / keys / PathOptionKey.hh
pilot / james / model_quality.ccoptions / keys / PathVectorOptionKey.fwd.hh
pilot / james / model_quality.ccoptions / keys / PathVectorOptionKey.hh
pilot / james / model_quality.ccoptions / keys / RealOptionKey.fwd.hh
pilot / james / model_quality.ccoptions / keys / RealOptionKey.hh
pilot / james / model_quality.ccoptions / keys / RealVectorOptionKey.fwd.hh
pilot / james / model_quality.ccoptions / keys / RealVectorOptionKey.hh
pilot / james / model_quality.ccoptions / keys / ScalarOptionKey.fwd.hh
pilot / james / model_quality.ccoptions / keys / ScalarOptionKey.hh
pilot / james / model_quality.ccoptions / keys / StringOptionKey.fwd.hh
pilot / james / model_quality.ccoptions / keys / StringOptionKey.hh
pilot / james / model_quality.ccoptions / keys / StringVectorOptionKey.fwd.hh
pilot / james / model_quality.ccoptions / keys / StringVectorOptionKey.hh
pilot / james / model_quality.ccoptions / keys / VectorOptionKey.fwd.hh
pilot / james / model_quality.ccoptions / keys / VectorOptionKey.hh
pilot / james / model_quality.ccoptions / keys / all.hh
pilot / james / model_quality.ccVirtualBase.fwd.hh
pilot / james / model_quality.ccVirtualBase.hh
pilot / james / model_quality.ccpointer / access_ptr.hh
pilot / james / model_quality.ccpointer / owning_ptr.hh
pilot / james / model_quality.ccsignals / BufferedSignalHub.fwd.hh
pilot / james / model_quality.ccsignals / BufferedSignalHub.hh
pilot / james / model_quality.ccsignals / Link.fwd.hh
pilot / james / model_quality.ccsignals / Link.hh
pilot / james / model_quality.ccsignals / LinkUnit.fwd.hh
pilot / james / model_quality.ccsignals / LinkUnit.hh
pilot / james / model_quality.ccsignals / SignalHub.fwd.hh
pilot / james / model_quality.ccsignals / SignalHub.hh
pilot / james / model_quality.ccexcn / Exceptions.hh
pilot / james / per_residue_features.ccstring_util.hh
pilot / james / per_residue_features.ccvector1.hh
pilot / james / per_residue_features.ccexcn / Exceptions.hh
pilot / james / phi_hack.ccio / ozstream.hh
pilot / james / phi_hack.ccexcn / Exceptions.hh
pilot / james / pick_frags.ccvector1.hh
pilot / james / pick_frags.ccio / izstream.hh
pilot / james / pick_frags.ccio / ozstream.hh
pilot / james / pick_frags.ccfile / FileName.hh
pilot / james / pick_frags.ccfile / file_sys_util.hh
pilot / james / pick_frags.ccexcn / Exceptions.hh
pilot / james / prof_search.ccvector1.hh
pilot / james / prof_search.ccio / izstream.hh
pilot / james / prof_search.ccio / ozstream.hh
pilot / james / prof_search.ccfile / FileName.hh
pilot / james / prof_search.ccexcn / Exceptions.hh
pilot / james / remap_aln.ccvector1.hh
pilot / james / remap_aln.ccio / ozstream.hh
pilot / james / remap_aln.ccfile / FileName.hh
pilot / james / remap_aln.ccexcn / Exceptions.hh
pilot / james / sc_interaction.ccvector1.hh
pilot / james / sc_interaction.ccio / ozstream.hh
pilot / james / sc_interaction.ccexcn / Exceptions.hh
pilot / james / score_silent_cst.ccvector1.hh
pilot / james / score_silent_cst.ccio / ozstream.hh
pilot / james / score_silent_cst.ccexcn / Exceptions.hh
pilot / james / seqdb_stats.ccio / izstream.hh
pilot / james / seqdb_stats.ccio / ozstream.hh
pilot / james / seqdb_stats.ccvector1.hh
pilot / james / seqdb_stats.ccfile / FileName.hh
pilot / james / seqdb_stats.ccfile / file_sys_util.hh
pilot / james / seqdb_stats.ccexcn / Exceptions.hh
pilot / james / silent_cst_quality.ccvector1.hh
pilot / james / silent_cst_quality.ccexcn / Exceptions.hh
pilot / james / simple_cm.ccvector1.hh
pilot / james / simple_cm.ccio / izstream.hh
pilot / james / simple_cm.ccio / ozstream.hh
pilot / james / simple_cm.ccfile / FileName.hh
pilot / james / simple_cm.ccfile / file_sys_util.hh
pilot / james / simple_cm.ccexcn / Exceptions.hh
pilot / james / sparta_superdev.ccvector1.hh
pilot / james / sparta_superdev.ccio / ozstream.hh
pilot / james / sparta_superdev.ccexcn / Exceptions.hh
pilot / james / super.ccvector1.hh
pilot / james / super.ccexcn / Exceptions.hh
pilot / james / superdev.ccvector1.hh
pilot / james / superdev.ccio / ozstream.hh
pilot / james / superdev.ccexcn / Exceptions.hh
pilot / james / thread_fast.ccexit.hh
pilot / james / thread_fast.ccvector1.hh
pilot / james / thread_fast.ccstring_util.hh
pilot / james / thread_fast.ccfile / FileName.hh
pilot / james / thread_fast.ccfile / file_sys_util.hh
pilot / james / thread_fast.ccio / mpistream.hh
pilot / james / thread_fast.ccexcn / Exceptions.hh
pilot / javierbq / detect_symmetry.ccexit.hh
pilot / javierbq / detect_symmetry.ccexcn / Exceptions.hh
pilot / javierbq / domains.ccVirtualBase.hh
pilot / javierbq / domains.ccpointer / owning_ptr.hh
pilot / javierbq / domains.ccexcn / Exceptions.hh
pilot / javierbq / fragment_based_design.ccfile / FileName.fwd.hh
pilot / javierbq / fragment_based_design.ccexcn / Exceptions.hh
pilot / javierbq / fragment_sequence_quality.ccio / izstream.hh
pilot / javierbq / fragment_sequence_quality.ccio / ozstream.hh
pilot / javierbq / fragment_sequence_quality.ccexcn / Exceptions.hh
pilot / javierbq / swap_elements.ccexit.hh
pilot / javierbq / swap_elements.ccexcn / Exceptions.hh
pilot / javierbq / test_serialize.ccexcn / Exceptions.hh
pilot / jcorn / hbond_connect.ccgraph / Graph.hh
pilot / jcorn / hotspot_hash.ccexit.hh
pilot / jcorn / hotspot_hash.ccfile / file_sys_util.hh
pilot / jcorn / hotspot_hash.ccvector1.hh
pilot / jcorn / hshash_utils.ccexit.hh
pilot / jcorn / hshash_utils.ccio / ozstream.hh
pilot / jcorn / hshash_utils.ccvector1.hh
pilot / jcorn / TwoChainInterface.ccvector1.hh
pilot / jcorn / TwoChainTenANeighbors.ccvector1.hh
pilot / jeliazkov / calc_cdr_rmsd.ccvector1.hh
pilot / jeliazkov / calc_cdr_rmsd.ccexcn / Exceptions.hh
pilot / jeliazkov / calc_irms_despite_mismatch.ccexcn / Exceptions.hh
pilot / jeliazkov / calc_irms_despite_mismatch.ccexit.hh
pilot / jianqing / Ncaa_Crosslink.ccvector1.hh
pilot / jianqing / snugdock.ccexcn / Exceptions.hh
pilot / jim / optE_test.ccgraph / Graph.hh
pilot / jim / optE_test.ccvector1.hh
pilot / jim / optE_test.ccexcn / Exceptions.hh
pilot / jim / optE_test.ccpointer / owning_ptr.hh
pilot / jim / optE_test.ccVirtualBase.hh
pilot / jim / rotamerize.ccstring_util.hh
pilot / jim / rotamerize.ccvector1.hh
pilot / jim / use_asn_motifs.ccgraph / Graph.hh
pilot / jim / use_asn_motifs.ccvector1.hh
pilot / jim / use_asn_motifs.ccexcn / Exceptions.hh
pilot / jim / use_asn_motifs.ccpointer / owning_ptr.hh
pilot / jim / use_asn_motifs.ccVirtualBase.hh
pilot / jjgray / antibody_metrics.ccexcn / Exceptions.hh
pilot / jkleman / add_membrane.ccexcn / Exceptions.hh
pilot / jkleman / input_from_cmd.ccfile / file_sys_util.hh
pilot / jkleman / input_from_cmd.ccstring_util.hh
pilot / jkleman / input_from_cmd.ccio / izstream.hh
pilot / jkleman / interface_statistics.ccexcn / Exceptions.hh
pilot / jkleman / interface_statistics.ccvector1.hh
pilot / jkleman / interface_statistics.ccstring_util.hh
pilot / jkleman / mp_find_interface.ccexcn / Exceptions.hh
pilot / jkleman / mp_find_interface_test.ccpointer / owning_ptr.hh
pilot / jkleman / mp_find_interface_test.ccvector1.hh
pilot / jkleman / mp_find_interface_test.ccexcn / Exceptions.hh
pilot / jkleman / mp_find_interface_test.ccstring_util.hh
pilot / jkleman / mp_parameters.ccfile / file_sys_util.hh
pilot / jkleman / mp_parameters.ccstring_util.hh
pilot / jkleman / mp_parameters.ccio / izstream.hh
pilot / jkleman / mp_qrtest.ccexcn / Exceptions.hh
pilot / jkleman / mp_qrtest.ccvector1.hh
pilot / jkleman / mp_qrtest.ccstring_util.hh
pilot / jkleman / mp_quick_relax.ccexcn / Exceptions.hh
pilot / jkleman / mp_relax_partners_separately.ccexcn / Exceptions.hh
pilot / jkleman / mpdocking.ccexcn / Exceptions.hh
pilot / jkleman / mpdocking_setup.ccexcn / Exceptions.hh
pilot / jkleman / mpframework_test.ccpointer / owning_ptr.hh
pilot / jkleman / mpframework_test.ccvector1.hh
pilot / jkleman / mpframework_test.ccexcn / Exceptions.hh
pilot / jkleman / mpframework_test1.ccpointer / owning_ptr.hh
pilot / jkleman / mpframework_test1.ccvector1.hh
pilot / jkleman / mpframework_test1.ccexcn / Exceptions.hh
pilot / jkleman / mpframework_test2.ccvector1.hh
pilot / jkleman / per_residue_sc_sasa.ccexcn / Exceptions.hh
pilot / jkleman / range_relax.ccexcn / Exceptions.hh
pilot / jkleman / simple_rotamer_recovery.ccexcn / Exceptions.hh
pilot / jkleman / simple_rotamer_recovery.ccvector1.hh
pilot / jkleman / spanfile_from_pdb.ccexcn / Exceptions.hh
pilot / jkleman / spanfile_from_pdb.ccstring_util.hh
pilot / jkleman / transform_into_membrane.ccexcn / Exceptions.hh
pilot / johnk / chet_report_rmsd.ccvector1.hh
pilot / johnk / chet_report_rmsd.ccio / ozstream.hh
pilot / johnk / chet_trp_to_gly.ccvector1.hh
pilot / johnk / chet_trp_to_gly.ccio / ozstream.hh
pilot / johnk / compute_ddgs.ccvector1.hh
pilot / johnk / compute_ddgs.ccio / ozstream.hh
pilot / johnk / compute_ddgs.ccexcn / Exceptions.hh
pilot / johnk / constellation_list.ccvector1.hh
pilot / johnk / constellation_list.ccio / ozstream.hh
pilot / johnk / david_check_pocket.ccvector1.hh
pilot / johnk / david_check_pocket.ccio / ozstream.hh
pilot / johnk / david_check_pocket.ccexcn / Exceptions.hh
pilot / johnk / david_open_pocket.ccvector1.hh
pilot / johnk / david_open_pocket.ccio / ozstream.hh
pilot / johnk / david_open_pocket.ccexcn / Exceptions.hh
pilot / johnk / hotspot_test.ccvector1.hh
pilot / johnk / hotspot_test.ccio / ozstream.hh
pilot / johnk / hotspot_test.ccexcn / Exceptions.hh
pilot / johnk / johnk_docking_protocol.ccvector1.hh
pilot / johnk / johnk_exact_geometric_solvation.ccvector1.hh
pilot / johnk / johnk_exact_geometric_solvation.ccio / ozstream.hh
pilot / johnk / johnk_exact_geometric_solvation.ccexcn / Exceptions.hh
pilot / johnk / johnk_gapless_threading.ccvector1.hh
pilot / johnk / johnk_gapless_threading.ccexcn / Exceptions.hh
pilot / johnk / johnk_interface_geosol_minimization.ccvector1.hh
pilot / johnk / johnk_interface_geosol_minimization.ccio / ozstream.hh
pilot / johnk / johnk_interface_geosol_minimization.ccexcn / Exceptions.hh
pilot / johnk / johnk_interface_recompute_score_and_rmsd.ccvector1.hh
pilot / johnk / johnk_interface_recompute_score_and_rmsd.ccio / ozstream.hh
pilot / johnk / johnk_interface_recompute_score_and_rmsd.ccexcn / Exceptions.hh
pilot / johnk / johnk_parametrize_geometric_solvation.ccvector1.hh
pilot / johnk / johnk_parametrize_geometric_solvation.ccio / ozstream.hh
pilot / johnk / johnk_parametrize_geometric_solvation.ccexcn / Exceptions.hh
pilot / johnk / johnk_recompute_score_and_rmsd.ccvector1.hh
pilot / johnk / johnk_recompute_score_and_rmsd.ccio / ozstream.hh
pilot / johnk / johnk_recompute_score_and_rmsd.ccexcn / Exceptions.hh
pilot / johnk / justin_identify_holes.ccvector1.hh
pilot / johnk / justin_identify_holes.ccio / ozstream.hh
pilot / johnk / justin_identify_holes.ccexcn / Exceptions.hh
pilot / johnk / justin_local_backrub.ccvector1.hh
pilot / johnk / justin_local_backrub.ccio / ozstream.hh
pilot / johnk / justin_local_backrub.ccexcn / Exceptions.hh
pilot / johnk / metrics_test.ccvector1.hh
pilot / johnk / metrics_test.ccio / ozstream.hh
pilot / johnk / metrics_test.ccexcn / Exceptions.hh
pilot / johnk / nadeem_compensatory_mutation.ccvector1.hh
pilot / johnk / nadeem_compensatory_mutation.ccio / ozstream.hh
pilot / johnk / nadeem_compensatory_mutation.ccexcn / Exceptions.hh
pilot / johnk / nadeem_find_destabilizing_mutation.ccvector1.hh
pilot / johnk / nadeem_find_destabilizing_mutation.ccio / ozstream.hh
pilot / johnk / nadeem_find_destabilizing_mutation.ccexcn / Exceptions.hh
pilot / johnk / old_test_geosol_minimization.ccvector1.hh
pilot / johnk / old_test_geosol_minimization.ccio / ozstream.hh
pilot / johnk / old_test_geosol_minimization.ccexcn / Exceptions.hh
pilot / johnk / phosphoArg_build_rotamers.ccvector1.hh
pilot / johnk / phosphoArg_build_rotamers.ccio / ozstream.hh
pilot / johnk / phosphoArg_build_rotamers.ccstring_util.hh
pilot / johnk / phosphoArg_minimize.ccvector1.hh
pilot / johnk / phosphoArg_minimize.ccio / ozstream.hh
pilot / johnk / phosphoArg_minimize.ccstring_util.hh
pilot / johnk / ragul_backbone_diversity.ccexcn / Exceptions.hh
pilot / johnk / srirupa_phosphoArg_build_rotamers.ccvector1.hh
pilot / johnk / srirupa_phosphoArg_build_rotamers.ccio / ozstream.hh
pilot / johnk / srirupa_phosphoArg_build_rotamers.ccstring_util.hh
pilot / johnk / srirupa_phosphoArg_build_rotamers.ccexcn / Exceptions.hh
pilot / johnk / srirupa_two_loops.ccexcn / Exceptions.hh
pilot / josh / motif_loop_build.ccexcn / Exceptions.hh
pilot / jrporter / inject_hash.ccstring_util.hh
pilot / jrporter / inject_hash.ccpointer / owning_ptr.hh
pilot / jrporter / inject_hash.ccexcn / Exceptions.hh
pilot / jrporter / topo_driver.cctag / Tag.hh
pilot / jstev / collect_features.ccvector1.hh
pilot / jstev / collect_features.ccio / util.hh
pilot / jstev / collect_features.ccio / irstream.hh
pilot / jstev / collect_features.ccexcn / Exceptions.hh
pilot / jtseffer / SID_rescore.ccio / ozstream.hh
pilot / kdrew / cmaes_test.ccexit.hh
pilot / kdrew / cmaes_test.ccexcn / Exceptions.hh
pilot / kdrew / ld_converter.ccpointer / owning_ptr.hh
pilot / kdrew / ld_converter.ccexcn / Exceptions.hh
pilot / kdrew / oop_creator.ccpointer / owning_ptr.hh
pilot / kdrew / oop_creator.ccexcn / Exceptions.hh
pilot / kdrew / oop_dock_design.ccexcn / Exceptions.hh
pilot / kenjung / FastGap.ccstring_util.hh
pilot / kenjung / FastGap.ccfile / file_sys_util.hh
pilot / kenjung / FastGap.ccexcn / Exceptions.hh
pilot / kenjung / FastGap.ccvector1.hh
pilot / kenjung / fragpdb.ccexcn / Exceptions.hh
pilot / kenjung / fragpdb.ccstring_util.hh
pilot / kenjung / lua_test.ccexcn / Exceptions.hh
pilot / kenjung / pose_serialize_test.ccexcn / Exceptions.hh
pilot / kenjung / sixdtreeTEST.ccexcn / Exceptions.hh
pilot / kenjung / symfragrm.ccexcn / Exceptions.hh
pilot / kenjung / symfragrm.ccstring_util.hh
pilot / kevin / buns.ccfile / FileName.hh
pilot / kevin / buns.ccvector1.hh
pilot / kevin / buns.ccoptions / keys / FileVectorOptionKey.hh
pilot / kevin / buns.ccio / ozstream.hh
pilot / kevin / buns.ccio / izstream.hh
pilot / kevin / bur_nodon_tyr.ccfile / file_sys_util.hh
pilot / kevin / bur_nodon_tyr.ccio / ozstream.hh
pilot / kevin / bur_nodon_tyr.ccvector1.hh
pilot / kevin / bur_nodon_tyr.ccexcn / Exceptions.hh
pilot / kevin / bur_nodon_tyr.ccgraph / UpperEdgeGraph.hh
pilot / kevin / bur_nodon_tyr.ccvector0.hh
pilot / kevin / BuriedUnsatPolarsFinder2.ccfile / FileName.hh
pilot / kevin / BuriedUnsatPolarsFinder2.ccvector1.hh
pilot / kevin / BuriedUnsatPolarsFinder3.ccfile / FileName.hh
pilot / kevin / BuriedUnsatPolarsFinder3.ccvector1.hh
pilot / kevin / khSandbox.ccfile / FileName.hh
pilot / kevin / khSandbox.ccvector1.hh
pilot / kevin / khSandbox2.ccfile / FileName.hh
pilot / kevin / khSandbox2.ccvector1.hh
pilot / kevin / khXtal_water_bunsat.ccfile / FileName.hh
pilot / kevin / khXtal_water_bunsat.ccvector1.hh
pilot / kevin / read_l_print_pdbinfo.ccfile / FileName.hh
pilot / kevin / read_l_print_pdbinfo.ccvector1.hh
pilot / kevin / read_l_print_pdbinfo.ccoptions / keys / FileVectorOptionKey.hh
pilot / kevin / read_l_print_pdbinfo.ccio / ozstream.hh
pilot / kevin / read_l_print_pdbinfo.ccio / izstream.hh
pilot / kevin / sasa_buns.ccfile / FileName.hh
pilot / kevin / sasa_buns.ccvector1.hh
pilot / kevin / sasa_buns.ccoptions / keys / RealOptionKey.hh
pilot / kevin / sasa_buns.ccoptions / keys / FileVectorOptionKey.hh
pilot / kevin / sasa_buns.ccio / ozstream.hh
pilot / kevin / sasa_buns.ccio / izstream.hh
pilot / kevin / template.ccfile / FileName.hh
pilot / kevin / template.ccvector1.hh
pilot / kevin / vsasa_pdbcode_res.ccfile / FileName.hh
pilot / kevin / vsasa_pdbcode_res.ccvector1.hh
pilot / kevin / vsasa_pdbcode_res.ccoptions / keys / RealOptionKey.hh
pilot / kevin / vsasa_pdbcode_res.ccoptions / keys / FileVectorOptionKey.hh
pilot / kevin / vsasa_pdbcode_res.ccio / ozstream.hh
pilot / kevin / vsasa_pdbcode_res.ccio / izstream.hh
pilot / kevin / wat_distances.ccfile / FileName.hh
pilot / kevin / wat_distances.ccvector1.hh
pilot / kale / kic_refactor / KicSandbox.hhVirtualBase.hh
pilot / kale / kic_refactor / KicSandbox.hhpointer / owning_ptr.hh
pilot / kale / kic_refactor / KicSandbox.hhexit.hh
pilot / kkappel / analyze_docked_RNA_motifs.ccvector1.hh
pilot / kkappel / analyze_docked_RNA_motifs.ccexcn / Exceptions.hh
pilot / kkappel / analyze_docked_RNA_motifs.ccstream_util.hh
pilot / kkappel / calculate_distances.ccpointer / owning_ptr.hh
pilot / kkappel / check_frag_rmsd.ccvector1.hh
pilot / kkappel / check_frag_rmsd.ccexcn / Exceptions.hh
pilot / kkappel / check_frag_rmsd.ccstream_util.hh
pilot / kkappel / get_rmsd.ccvector1.hh
pilot / kkappel / get_rmsd.ccexcn / Exceptions.hh
pilot / kkappel / move_jump.ccpointer / owning_ptr.hh
pilot / kkappel / score_rnp.ccpointer / owning_ptr.hh
pilot / kkappel / score_rnp_lowres.ccpointer / owning_ptr.hh
pilot / kkappel / test_rna_protein.ccpointer / owning_ptr.hh
pilot / krishna / ab_binding.ccvector1.hh
pilot / krishna / ab_binding.ccfile / FileName.hh
pilot / krishna / ab_binding.ccstring_util.hh
pilot / krishna / antibody_test.ccvector1.hh
pilot / krishna / antibody_test.ccfile / FileName.hh
pilot / krishna / mtransferase.ccvector1.hh
pilot / krishna / mtransferase.ccstring_util.hh
pilot / krishna / pH_docking.ccvector1.hh
pilot / krishna / pH_docking.ccfile / FileName.hh
pilot / krishna / pH_docking.ccstring_util.hh
pilot / kuichan / design_disulfide.ccvector1.hh
pilot / kuichan / design_disulfide.ccexcn / Exceptions.hh
pilot / kyleb / fragment_extract.ccvector1.hh
pilot / kyleb / fragment_extract.ccio / ozstream.hh
pilot / kyleb / fragment_extract.ccio / izstream.hh
pilot / kyleb / fragment_extract.ccexcn / Exceptions.hh
pilot / labonte / debug_labontes_current_work.ccexcn / Exceptions.hh
pilot / labonte / design_glycans.ccpointer / owning_ptr.hh
pilot / labonte / design_glycans.ccexcn / Exceptions.hh
pilot / labonte / glycomutagenesis.ccexcn / Exceptions.hh
pilot / labonte / load_crazy_sugars.ccexcn / Exceptions.hh
pilot / labonte / test_glycan_linkages.ccexcn / Exceptions.hh
pilot / rhiju / legacy / add_delete_monte_carlo.ccvector1.hh
pilot / rhiju / legacy / add_delete_monte_carlo.cctools / make_vector1.hh
pilot / rhiju / legacy / add_delete_monte_carlo.ccio / ozstream.hh
pilot / rhiju / legacy / add_delete_monte_carlo.ccio / izstream.hh
pilot / rhiju / legacy / erraser_monte_carlo.ccvector1.hh
pilot / rhiju / legacy / OLD_TRIAL_protein_helix_assemble.ccvector1.hh
pilot / rhiju / legacy / OLD_TRIAL_protein_helix_assemble.ccio / ozstream.hh
pilot / rhiju / legacy / OLD_TRIAL_protein_helix_assemble.ccio / izstream.hh
pilot / rhiju / legacy / OLD_TRIAL_protein_helix_assemble.ccexit.hh
pilot / rhiju / legacy / stepwise_test.ccvector1.hh
pilot / rhiju / legacy / stepwise_test.ccio / ozstream.hh
pilot / rhiju / legacy / TRIAL_protein_helix_assemble.ccvector1.hh
pilot / rhiju / legacy / turner_rules_test.ccvector1.hh
pilot / rhiju / legacy / turner_rules_test.ccio / ozstream.hh
pilot / rhiju / legacy / turner_rules_test.ccio / izstream.hh
pilot / rhiju / legacy / turner_rules_test.cctools / make_vector1.hh
pilot / rhiju / legacy / turner_rules_test.ccfile / file_sys_util.hh
pilot / rhiju / legacy / turner_rules_test.ccfile / gzip_util.hh
pilot / rhiju / legacy / turner_rules_test_WORKS.ccvector1.hh
pilot / rhiju / legacy / turner_rules_test_WORKS.ccio / ozstream.hh
pilot / rhiju / legacy / turner_rules_test_WORKS.ccio / izstream.hh
pilot / rhiju / legacy / turner_rules_test_WORKS.ccfile / file_sys_util.hh
public / stepwise / legacy / swa_protein_main.ccvector1.hh
public / stepwise / legacy / swa_rna_main.ccfile / file_sys_util.hh
public / stepwise / legacy / swa_rna_main.ccvector1.hh
public / stepwise / legacy / swa_rna_main.ccexcn / Exceptions.hh
public / stepwise / legacy / swa_rna_util.ccvector1.hh
public / stepwise / legacy / swa_rna_util.ccfile / file_sys_util.hh
public / stepwise / legacy / swa_rna_util.ccexcn / Exceptions.hh
public / recces / legacy / recces_turner.ccexcn / Exceptions.hh
public / legacy_sewing / sewing_hasher.ccio / izstream.hh
public / legacy_sewing / sewing_hasher.ccstring_util.hh
public / legacy_sewing / sewing_hasher.ccvector1.hh
public / legacy_sewing / sewing_hasher.ccfile / FileName.hh
pilot / lemmon / deepMove.ccvector0.hh
pilot / lemmon / deepMove.ccexcn / Exceptions.hh
pilot / lemmon / ligand_design.ccexcn / Exceptions.hh
pilot / lemmon / pack.ccvector0.hh
pilot / lemmon / pack.ccexcn / Exceptions.hh
pilot / lemmon / protonatePack.ccexcn / Exceptions.hh
pilot / lemmon / randomMove.ccvector0.hh
pilot / lemmon / randomMove.ccexcn / Exceptions.hh
pilot / lemmon / readAndWrite.ccvector0.hh
pilot / lemmon / readAndWrite.ccexcn / Exceptions.hh
pilot / lemmon / rmsd_calculator.ccvector0.hh
pilot / lemmon / simpleScore.ccvector0.hh
pilot / lemmon / simpleScore.ccexcn / Exceptions.hh
pilot / lemmon / undirected_graph.ccvector1.hh
public / ligand_design / revold.ccexcn / Exceptions.hh
public / ligand_docking / extract_atomtree_diffs.ccexit.hh
public / ligand_docking / extract_atomtree_diffs.ccpointer / owning_ptr.hh
public / ligand_docking / extract_atomtree_diffs.ccvector1.hh
public / ligand_docking / extract_atomtree_diffs.ccexcn / Exceptions.hh
public / ligand_docking / ligand_dock.ccexcn / Exceptions.hh
public / ligand_docking / ligand_rpkmin.ccexcn / Exceptions.hh
public / ligand_docking / select_best_unique_ligand_poses.ccvector1.hh
public / ligand_docking / select_best_unique_ligand_poses.ccexit.hh
public / ligand_docking / select_best_unique_ligand_poses.ccio / ozstream.hh
public / ligand_docking / select_best_unique_ligand_poses.ccexcn / Exceptions.hh
public / sewing / ligand_sewing_tools / backside_hbond_finder.ccexcn / Exceptions.hh
public / sewing / ligand_sewing_tools / backside_hbond_finder.ccvector1.hh
public / sewing / ligand_sewing_tools / backside_hbond_finder.ccfixedsizearray1.hh
public / sewing / ligand_sewing_tools / generate_starting_zinc_sites.ccexcn / Exceptions.hh
public / sewing / ligand_sewing_tools / generate_starting_zinc_sites.ccstring_util.hh
public / sewing / ligand_sewing_tools / metal_site_finder.ccvector1.hh
public / sewing / ligand_sewing_tools / metal_site_finder.ccvector1.functions.hh
public / sewing / ligand_sewing_tools / metal_site_finder.ccexcn / Exceptions.hh
public / sewing / ligand_sewing_tools / zinc_statistic_generator.ccio / ozstream.hh
public / sewing / ligand_sewing_tools / zinc_statistic_generator.ccfile / file_sys_util.hh
public / sewing / ligand_sewing_tools / zinc_statistic_generator.ccexcn / Exceptions.hh
public / sewing / ligand_sewing_tools / zinc_statistic_generator.ccstring_util.hh
public / sewing / ligand_sewing_tools / zinc_statistic_generator.ccvector1.hh
public / sewing / ligand_sewing_tools / zinc_statistic_generator.ccfixedsizearray1.hh
public / sewing / ligand_sewing_tools / zinc_statistic_generator.ccVirtualBase.hh
pilot / lin / SymmAbrelax.ccio / mpistream.hh
pilot / lin / SymmAbrelax.ccexcn / Exceptions.hh
pilot / lin / SymmSilentFile.ccfile / file_sys_util.hh
pilot / lin / SymmSilentFile.ccio / mpistream.hh
pilot / lin / SymmSilentFile.ccexcn / Exceptions.hh
pilot / lior / CycDsulf.ccgraph / Graph.hh
pilot / lior / CycDsulf.ccvector1.hh
pilot / lior / CycDsulf.ccexcn / Exceptions.hh
pilot / lior / CycPepMain.ccexcn / Exceptions.hh
pilot / lior / feature_schema_generator.ccexcn / Exceptions.hh
pilot / liz / close_homolog_refinement.ccio / izstream.hh
pilot / liz / close_homolog_refinement.ccexcn / Exceptions.hh
pilot / liz / consolidate_clusters.ccvector1.hh
pilot / liz / consolidate_clusters.ccfile / FileName.hh
pilot / liz / consolidate_clusters.ccexcn / Exceptions.hh
pilot / liz / create_hierarchy.ccexit.hh
pilot / liz / create_hierarchy.ccexcn / Exceptions.hh
pilot / liz / ensemble_generator.ccio / izstream.hh
pilot / liz / ensemble_generator.ccexcn / Exceptions.hh
pilot / liz / ensemble_generator.ccfile / FileName.hh
pilot / liz / ensemble_generator.ccvector1.hh
pilot / liz / ensemble_generator.ccio / ozstream.hh
pilot / liz / ensemble_generator_score12_sidechain.ccio / izstream.hh
pilot / liz / ensemble_generator_score12_sidechain.ccfile / FileName.hh
pilot / liz / ensemble_generator_score12_sidechain.ccvector1.hh
pilot / liz / ensemble_generator_score12_sidechain.ccio / ozstream.hh
pilot / liz / ensemble_generator_score12_sidechain.ccexcn / Exceptions.hh
pilot / liz / ensemble_generator_using_mover.ccfile / FileName.hh
pilot / liz / ensemble_generator_using_mover.ccvector1.hh
pilot / liz / ensemble_generator_using_mover.ccio / ozstream.hh
pilot / liz / ensemble_generator_using_mover.ccio / izstream.hh
pilot / liz / ensemble_generator_using_mover.ccexcn / Exceptions.hh
pilot / liz / minimize_with_constraints.ccvector1.hh
pilot / liz / minimize_with_constraints.ccexcn / Exceptions.hh
pilot / liz / minimize_with_constraints.ccio / mpistream.hh
pilot / liz / minimize_with_cst.ccio / izstream.hh
pilot / liz / minimize_with_cst.ccfile / FileName.hh
pilot / liz / minimize_with_cst.ccfile / file_sys_util.hh
pilot / liz / minimize_with_cst.ccvector1.hh
pilot / liz / minimize_with_cst.ccio / ozstream.hh
pilot / liz / minimize_with_cst.ccexcn / Exceptions.hh
pilot / liz / monomer_ddg.ccexcn / Exceptions.hh
pilot / liz / monomer_ddg.ccio / izstream.hh
pilot / liz / sasa.ccio / izstream.hh
pilot / liz / sasa.ccfile / FileName.hh
pilot / liz / sasa.ccvector1.hh
pilot / liz / sasa.ccio / ozstream.hh
pilot / liz / sasa.ccexcn / Exceptions.hh
pilot / liz / score_ddgs.ccfile / FileName.hh
pilot / liz / score_ddgs.ccexcn / Exceptions.hh
pilot / liz / test_canonical_mover.ccexcn / Exceptions.hh
pilot / liz / test_scmcmover.ccexcn / Exceptions.hh
public / loop_modeling / loodo.ccvector1.hh
public / loop_modeling / loodo.ccio / izstream.hh
public / loop_modeling / loopmodel.ccexcn / Exceptions.hh
public / loop_modeling / transform_loodo.ccvector1.hh
public / loop_modeling / transform_loodo.ccio / izstream.hh
public / magnesium / mg_modeler.ccvector1.hh
public / magnesium / mg_modeler.cctools / make_vector1.hh
pilot / maprahamian / burial_measure_centroid.ccexcn / Exceptions.hh
pilot / maprahamian / burial_measure_sphere.ccexcn / Exceptions.hh
pilot / maprahamian / burial_measure_sphere.ccio / izstream.hh
pilot / maprahamian / burial_measure_sphere.ccfile / FileName.hh
pilot / maprahamian / burial_measure_sphere.ccvector1.hh
pilot / maprahamian / per_residue_solvent_exposure.ccexcn / Exceptions.hh
pilot / maprahamian / score_test.ccexcn / Exceptions.hh
public / match / gen_apo_grids.ccstring_util.hh
public / match / gen_apo_grids.ccexit.hh
public / match / gen_apo_grids.ccvector1.hh
public / match / gen_apo_grids.ccexcn / Exceptions.hh
public / match / gen_lig_grids.ccexit.hh
public / match / gen_lig_grids.ccvector1.hh
public / match / gen_lig_grids.ccexcn / Exceptions.hh
public / match / match.ccvector1.hh
public / match / match.ccexcn / Exceptions.hh
pilot / mdsmith / ligand_motifs.ccgraph / Graph.hh
pilot / mdsmith / ligand_motifs.ccvector1.hh
pilot / mdsmith / ligand_motifs.ccexit.hh
pilot / mdsmith / ligand_motifs.ccpointer / owning_ptr.hh
pilot / mdsmith / ligand_motifs.ccVirtualBase.hh
pilot / mdsmith / ligand_motifs.ccexcn / Exceptions.hh
pilot / mdsmith / ligand_motifs.ccio / ozstream.hh
pilot / mdsmith / ligand_motifs.ccfile / FileName.hh
pilot / mdsmith / motif_ligand_packer_design.ccfile / file_sys_util.hh
pilot / mdsmith / motif_ligand_packer_design.ccfile / FileName.hh
pilot / mdsmith / motif_ligand_packer_design.ccvector1.hh
pilot / mdsmith / motif_ligand_packer_design.ccstring_util.hh
pilot / mdsmith / motif_ligand_packer_design.ccexcn / Exceptions.hh
pilot / membrane / load_membrane_pose.ccpointer / owning_ptr.hh
pilot / membrane / load_membrane_pose.ccexcn / Exceptions.hh
pilot / membrane / membrane_ddG.ccexcn / Exceptions.hh
pilot / membrane / membrane_symdocking.ccexcn / Exceptions.hh
pilot / membrane / mp_rsd_energies.ccvector1.hh
pilot / membrane / mp_rsd_energies.ccfile / FileName.hh
pilot / membrane / mp_rsd_energies.ccfile / file_sys_util.hh
pilot / membrane / view_membrane_protein.ccpointer / owning_ptr.hh
pilot / membrane / view_membrane_protein.ccexcn / Exceptions.hh
public / membrane / mp_dock.ccexcn / Exceptions.hh
public / membrane / mp_dock_setup.ccexcn / Exceptions.hh
public / membrane / mp_domain_assembly.ccexcn / Exceptions.hh
public / membrane / mp_domain_assembly.ccminmax.hh
public / membrane / mp_lipid_acc.ccpointer / owning_ptr.hh
public / membrane / mp_lipid_acc.ccexcn / Exceptions.hh
public / membrane / mp_mutate_relax.ccexcn / Exceptions.hh
public / membrane / mp_range_relax.ccexcn / Exceptions.hh
public / membrane / mp_seqrecov.ccio / ozstream.hh
public / membrane / mp_seqrecov.ccfile / file_sys_util.hh
public / membrane / mp_seqrecov.ccvector1.hh
public / membrane / mp_seqrecov.ccexcn / Exceptions.hh
public / membrane / mp_seqrecov.ccgraph / UpperEdgeGraph.hh
public / membrane / mp_span_from_pdb.ccexcn / Exceptions.hh
public / membrane / mp_span_from_pdb.ccstring_util.hh
public / membrane / mp_symdock.ccexcn / Exceptions.hh
public / membrane / mp_transform.ccexcn / Exceptions.hh
public / membrane / mp_viewer.ccpointer / owning_ptr.hh
public / membrane / mp_viewer.ccexcn / Exceptions.hh
public / membrane_abinitio / membrane_abinitio2.ccexcn / Exceptions.hh
pilot / mike / alignanalyse.ccfile / FileName.hh
pilot / mike / alignanalyse.ccexcn / Exceptions.hh
pilot / mike / alignanalyse.ccvector1.hh
pilot / mike / batchrelax.ccpointer / owning_ptr.hh
pilot / mike / batchrelax.ccexcn / Exceptions.hh
pilot / mike / crossaln.ccvector1.hh
pilot / mike / crossaln.ccio / ozstream.hh
pilot / mike / crossaln.ccfile / FileName.fwd.hh
pilot / mike / crossaln.ccstring_util.hh
pilot / mike / crossaln.ccexcn / Exceptions.hh
pilot / mike / energy_diff.ccexcn / Exceptions.hh
pilot / mike / evolution.ccfile / FileName.hh
pilot / mike / evolution.ccstring_util.hh
pilot / mike / evolution.ccexcn / Exceptions.hh
pilot / mike / evolution.ccvector1.hh
pilot / mike / geturl_handler.hinline_file_provider.hh
pilot / mike / inlinetest.ccexcn / Exceptions.hh
pilot / mike / loophash.ccexit.hh
pilot / mike / loophash.ccpointer / owning_ptr.hh
pilot / mike / loophash.ccexcn / Exceptions.hh
pilot / mike / loophash.ccvector1.hh
pilot / mike / loophash_analyse.ccexcn / Exceptions.hh
pilot / mike / loophash_analyse.ccexit.hh
pilot / mike / loophash_analyse.ccfixedsizearray1.hh
pilot / mike / loophash_analyse.ccpointer / owning_ptr.hh
pilot / mike / loophash_cenrelax.ccexcn / Exceptions.hh
pilot / mike / loophash_cenrelax.ccexit.hh
pilot / mike / loophash_cenrelax.ccfixedsizearray1.hh
pilot / mike / loophash_cenrelax.ccpointer / owning_ptr.hh
pilot / mike / loophash_createdb.ccvector1.hh
pilot / mike / loophash_createdb.ccexcn / Exceptions.hh
pilot / mike / loophash_mpi.ccexcn / Exceptions.hh
pilot / mike / loophash_test.ccstring_util.hh
pilot / mike / loophash_test.ccvector1.hh
pilot / mike / loophash_test.ccexcn / Exceptions.hh
pilot / mike / make_cst.ccfile / FileName.hh
pilot / mike / make_cst.ccexcn / Exceptions.hh
pilot / mike / md.ccexcn / Exceptions.hh
pilot / mike / md.ccvector1.hh
pilot / mike / mikejd2test.ccio / izstream.hh
pilot / mike / mikejd2test.ccvector1.hh
pilot / mike / mikejd2test.ccio / util.hh
pilot / mike / mikejd2test.ccexit.hh
pilot / mike / mikejd2test.ccexcn / Exceptions.hh
pilot / mike / minbench.cctag / Tag.hh
pilot / mike / minbench.ccstring_util.hh
pilot / mike / minbench.ccexcn / Exceptions.hh
pilot / mike / rama_test.cctag / Tag.hh
pilot / mike / rama_test.ccexcn / Exceptions.hh
pilot / mike / relax_viewer.ccvector1.hh
pilot / mike / relax_viewer.ccexcn / Exceptions.hh
pilot / mike / rosetta_backend.ccpointer / owning_ptr.hh
pilot / mike / rosetta_backend.cccurl.hh
pilot / mike / rosetta_backend.ccexcn / Exceptions.hh
pilot / mike / rosetta_backend.ccjson_spirit / json_spirit_value.h
pilot / mike / rosetta_backend.ccjson_spirit / json_spirit_reader.h
pilot / mike / rosetta_backend.ccjson_spirit / json_spirit_writer.h
pilot / mike / rosetta_backend.ccjson_spirit / json_spirit_tools.hh
pilot / mike / rosetta_backend.ccvector1.hh
pilot / mike / rosetta_native_client.cctag / Tag.hh
pilot / mike / rosetta_native_client.ccstring_util.hh
pilot / mike / rosetta_native_client.ccinline_file_provider.hh
pilot / mike / rosetta_native_client.ccexcn / Exceptions.hh
pilot / mike / rosetta_native_client.ccstatic_database.hh
pilot / mike / sctrials.cctag / Tag.hh
pilot / mike / sctrials.ccstring_util.hh
pilot / mike / sctrials.ccexcn / Exceptions.hh
pilot / mike / shake.ccexcn / Exceptions.hh
pilot / mike / silent2cst.ccexcn / Exceptions.hh
pilot / mike / silent2cst.ccexit.hh
pilot / mike / silent2frag.ccvector1.hh
pilot / mike / silent2frag.ccexcn / Exceptions.hh
pilot / mike / testderiv.ccvector1.hh
pilot / mike / testderiv.ccexcn / Exceptions.hh
pilot / mike / testloop.ccexcn / Exceptions.hh
pilot / mike / testmpi.ccexcn / Exceptions.hh
pilot / momeara / features_database_schema.ccsql_database / DatabaseSessionManager.fwd.hh
pilot / momeara / features_database_schema.ccvector1.hh
pilot / momeara / features_database_schema.ccexcn / Exceptions.hh
pilot / momeara / format_converter.ccexcn / Exceptions.hh
pilot / momeara / hbond_param_sweep.ccvector1.hh
pilot / momeara / hbonds_test.ccvector1.hh
pilot / momeara / hbonds_test.ccfile / FileName.hh
pilot / momeara / report_hbonds.ccio / izstream.hh
pilot / momeara / report_hbonds.ccoptions / keys / StringOptionKey.hh
pilot / momeara / report_hbonds.ccoptions / keys / BooleanOptionKey.hh
pilot / momeara / report_hbonds.ccvector1.hh
pilot / momeara / report_hbonds.ccfile / FileName.hh
pilot / momeara / report_hbonds.ccfile / FileName.fwd.hh
pilot / momeara / report_hbonds.ccfile / file_sys_util.hh
pilot / momeara / report_hbonds.ccexcn / Exceptions.hh
pilot / monica / moves_test.ccvector1.hh
pilot / monica / moves_test.ccoptions / keys / BooleanOptionKey.hh
public / motif_dock / make_motif_tables.ccio / ozstream.hh
public / motif_dock / make_motif_tables.ccfixedsizearray1.hh
public / motif_dock / make_motif_tables.ccfile / file_sys_util.hh
public / motif_ligand_discovery / determine_real_motifs.ccexcn / Exceptions.hh
public / motif_ligand_discovery / determine_real_motifs.ccstring_util.hh
public / motif_ligand_discovery / determine_real_motifs.ccio / ozstream.hh
public / motif_ligand_discovery / determine_real_motifs.ccfile / FileName.hh
public / motif_ligand_discovery / determine_real_motifs.ccfile / file_sys_util.hh
public / motif_ligand_discovery / determine_real_motifs.ccvector1.hh
public / motif_ligand_discovery / identify_ligand_motifs.ccexcn / Exceptions.hh
public / motif_ligand_discovery / identify_ligand_motifs.ccio / ozstream.hh
public / motif_ligand_discovery / identify_ligand_motifs.ccfile / FileName.hh
public / motif_ligand_discovery / ligand_discovery_search_protocol.ccio / ozstream.hh
public / motif_ligand_discovery / ligand_discovery_search_protocol.ccfile / file_sys_util.hh
public / motif_ligand_discovery / ligand_discovery_search_protocol.ccfile / FileName.hh
public / motif_ligand_discovery / ligand_discovery_search_protocol.ccvector1.hh
public / motif_ligand_discovery / ligand_discovery_search_protocol.ccstring_util.hh
public / motif_ligand_discovery / ligand_discovery_search_protocol.ccexcn / Exceptions.hh
public / motif_ligand_discovery / remove_duplicate_motifs.ccio / ozstream.hh
public / motif_ligand_discovery / remove_duplicate_motifs.ccfile / file_sys_util.hh
public / motif_ligand_discovery / remove_duplicate_motifs.ccfile / FileName.hh
public / motif_ligand_discovery / remove_duplicate_motifs.ccvector1.hh
public / motif_ligand_discovery / remove_duplicate_motifs.ccstring_util.hh
public / motif_ligand_discovery / remove_duplicate_motifs.ccexcn / Exceptions.hh
public / motif_tools / extract_motifs.ccexcn / Exceptions.hh
public / motif_tools / incorporate_motifs.ccexcn / Exceptions.hh
pilot / mpacella / surface_docking.ccexcn / Exceptions.hh
pilot / mseetin / convert_pdb_to_silent_file.ccvector1.hh
pilot / mseetin / convert_pdb_to_silent_file.ccio / ozstream.hh
pilot / mseetin / convert_pdb_to_silent_file.ccio / izstream.hh
public / rosetta_scripts / multistage / multistage_rosetta_scripts.cctag / Tag.hh
public / rosetta_scripts / multistage / multistage_rosetta_scripts.ccexit.hh
public / rosetta_scripts / multistage / multistage_rosetta_scripts.ccexcn / Exceptions.hh
public / rosetta_scripts / multistage / reverse_conversion_util.hhtag / Tag.hh
pilot / murphp / inv_kin_lig_loop_design.cctag / Tag.hh
pilot / murphp / inv_kin_lig_loop_design.ccvector1.hh
pilot / nannemdp / params2pdb.ccvector0.hh
pilot / nannemdp / params2pdb.ccio / ozstream.hh
pilot / kale / native_ensemble / native_ensemble.ccsql_database / DatabaseSessionManager.hh
pilot / kale / native_ensemble / native_ensemble.cctools / make_vector1.hh
pilot / kale / native_ensemble / native_ensemble.ccvector1.hh
public / ncaa_utilities / MakeRotLib.ccpointer / memory.hh
public / ncaa_utilities / MakeRotLib.ccexcn / Exceptions.hh
public / ncaa_utilities / UnfoldedStateEnergyCalculator.ccexcn / Exceptions.hh
pilot / neil / calc_ddG.ccio / izstream.hh
pilot / neil / calc_ddG.ccio / ozstream.hh
pilot / neil / calc_ddG.ccio / mpistream.hh
pilot / neil / calc_ddG.ccstring_util.hh
pilot / neil / char_native.ccio / izstream.hh
pilot / neil / char_native.ccio / ozstream.hh
pilot / neil / char_native.ccio / mpistream.hh
pilot / neil / char_native.ccstring_util.hh
pilot / neil / coiled_coil_search.ccio / izstream.hh
pilot / neil / coiled_coil_search.ccio / ozstream.hh
pilot / neil / coiled_coil_search.ccstring_util.hh
pilot / neil / des_pos_ddG.ccio / izstream.hh
pilot / neil / des_pos_ddG.ccio / ozstream.hh
pilot / neil / des_pos_ddG.ccio / mpistream.hh
pilot / neil / des_pos_ddG.ccstring_util.hh
pilot / neil / design_symm.bak.110314.ccio / izstream.hh
pilot / neil / design_symm.bak.110314.ccio / ozstream.hh
pilot / neil / design_symm.bak.110314.ccio / mpistream.hh
pilot / neil / design_symm.bak.110314.ccstring_util.hh
pilot / neil / design_symm.ccio / izstream.hh
pilot / neil / design_symm.ccio / ozstream.hh
pilot / neil / design_symm.ccio / mpistream.hh
pilot / neil / design_symm.ccstring_util.hh
pilot / neil / design_symm_110330_good.ccio / izstream.hh
pilot / neil / design_symm_110330_good.ccio / ozstream.hh
pilot / neil / design_symm_110330_good.ccio / mpistream.hh
pilot / neil / design_symm_110330_good.ccstring_util.hh
pilot / neil / design_symm_no_hack_elec.ccio / izstream.hh
pilot / neil / design_symm_no_hack_elec.ccio / ozstream.hh
pilot / neil / design_symm_no_hack_elec.ccio / mpistream.hh
pilot / neil / design_symm_no_hack_elec.ccstring_util.hh
pilot / neil / enumeration_test.ccio / izstream.hh
pilot / neil / enumeration_test.ccio / mpistream.hh
pilot / neil / enumeration_test.ccio / ozstream.hh
pilot / neil / enumeration_test.ccstring_util.hh
pilot / neil / matdes_design.ccio / izstream.hh
pilot / neil / matdes_design.ccio / ozstream.hh
pilot / neil / matdes_design.ccio / mpistream.hh
pilot / neil / matdes_design.ccstring_util.hh
pilot / neil / matdes_design_2comp.ccio / izstream.hh
pilot / neil / matdes_design_2comp.ccio / ozstream.hh
pilot / neil / matdes_design_2comp.ccio / mpistream.hh
pilot / neil / matdes_design_2comp.ccstring_util.hh
pilot / neil / matdes_dock.ccio / izstream.hh
pilot / neil / matdes_dock.ccio / mpistream.hh
pilot / neil / matdes_dock.ccio / ozstream.hh
pilot / neil / matdes_dock.ccstring_util.hh
pilot / neil / matdes_mutalyze.ccio / izstream.hh
pilot / neil / matdes_mutalyze.ccio / ozstream.hh
pilot / neil / matdes_mutalyze.ccio / mpistream.hh
pilot / neil / matdes_mutalyze.ccstring_util.hh
pilot / neil / relax_building_block.ccio / izstream.hh
pilot / neil / relax_building_block.ccio / ozstream.hh
pilot / neil / relax_building_block.ccio / mpistream.hh
pilot / neil / relax_building_block.ccstring_util.hh
pilot / neil / symdock_enum.ccstring_util.hh
pilot / neil / symdock_enum.ccio / izstream.hh
pilot / neil / symdock_enum.ccio / ozstream.hh
pilot / neil / symdock_enum_3_1.ccstring_util.hh
pilot / neil / symdock_enum_3_1.ccio / izstream.hh
pilot / neil / symdock_enum_3_1.ccio / ozstream.hh
pilot / nikolas / r_segment_rdc.ccexcn / Exceptions.hh
pilot / nikolas / r_SymDock_viewer.ccexcn / Exceptions.hh
pilot / nir / PeptideDeriver.ccexcn / Exceptions.hh
pilot / nmarze / elliptical_ip.ccexcn / Exceptions.hh
pilot / nmarze / elliptical_ip.ccexit.hh
pilot / nmarze / elliptical_ip.ccvector1.hh
pilot / nmarze / hemagg_trimer.ccexcn / Exceptions.hh
pilot / nmarze / hemagg_trimer.ccexit.hh
pilot / nmarze / hemagg_trimer.ccvector1.hh
pilot / nmarze / motif_dock.ccexcn / Exceptions.hh
public / nmr / calc_nmr_tensor.ccexcn / Exceptions.hh
public / nmr / ligand_transform_with_pcs.ccvector1.hh
public / nmr / ligand_transform_with_pcs.ccexcn / Exceptions.hh
public / nmr / ligand_transform_with_pcs.ccstring_util.hh
public / nmr / ligand_transform_with_pcs.ccgraph / Graph.fwd.hh
public / nmr / r_noe_assign.ccexcn / Exceptions.hh
public / nmr / r_noe_assign.ccvector1.hh
pilot / nobuyasu / cluster.ccexcn / Exceptions.hh
pilot / nobuyasu / fldsgn.ccexcn / Exceptions.hh
pilot / nobuyasu / fldsgn.ccfile / FileName.hh
pilot / nobuyasu / fldsgn.ccoptions / keys / OptionKey.hh
pilot / nobuyasu / fldsgn.ccvector1.hh
pilot / nobuyasu / flxbb.ccexcn / Exceptions.hh
pilot / nobuyasu / foldptn.ccexcn / Exceptions.hh
pilot / nobuyasu / frag2profile.ccexcn / Exceptions.hh
pilot / nobuyasu / frag2profile.ccvector1.hh
pilot / nobuyasu / local_rmsd.ccstring_util.hh
pilot / nobuyasu / local_rmsd.ccexcn / Exceptions.hh
pilot / nobuyasu / make_blueprint.ccexcn / Exceptions.hh
pilot / nobuyasu / make_frag_ssdep.ccexcn / Exceptions.hh
pilot / nobuyasu / ncontact.ccvector1.hh
pilot / nobuyasu / ncontact.ccexcn / Exceptions.hh
pilot / nobuyasu / pair_distance.ccexcn / Exceptions.hh
pilot / nobuyasu / pick_bab.ccexcn / Exceptions.hh
pilot / nobuyasu / pick_lowestscore_pose.ccvector1.hh
pilot / nobuyasu / pick_lowestscore_pose.ccio / ozstream.hh
pilot / nobuyasu / pick_lowestscore_pose.ccexit.hh
pilot / nobuyasu / pick_lowestscore_pose.ccexcn / Exceptions.hh
pilot / nobuyasu / rama.ccexcn / Exceptions.hh
pilot / nobuyasu / sasa.ccstring_util.hh
pilot / nobuyasu / sasa.ccexcn / Exceptions.hh
pilot / nobuyasu / score_delete_segments.ccstring_util.hh
pilot / nobuyasu / score_delete_segments.ccexcn / Exceptions.hh
public / noncanonical_backbones / hbs_design.ccpointer / owning_ptr.hh
public / noncanonical_backbones / hbs_design.ccexcn / Exceptions.hh
public / noncanonical_backbones / oop_design.ccpointer / owning_ptr.hh
public / noncanonical_backbones / oop_design.ccexcn / Exceptions.hh
public / noncanonical_backbones / peptoid_design.ccpointer / owning_ptr.hh
pilot / will / old / atom_design.ccio / ozstream.hh
pilot / will / old / atom_design.ccstring_util.hh
pilot / will / old / atom_design.ccvector0.hh
pilot / will / old / atom_design.ccvector1.hh
pilot / will / old / atom_type_rdf.ccio / ozstream.hh
pilot / will / old / bpy.ccio / izstream.hh
pilot / will / old / bpy.ccio / ozstream.hh
pilot / will / old / cluster_cyc_disulf.ccvector1.hh
pilot / will / old / coiled_coil.ccio / izstream.hh
pilot / will / old / coiled_coil.ccio / ozstream.hh
pilot / will / old / coiled_coil_zn.ccio / izstream.hh
pilot / will / old / coiled_coil_zn.ccio / ozstream.hh
pilot / will / old / crossmatch.ccexcn / Exceptions.hh
pilot / will / old / crossmatch.ccio / izstream.hh
pilot / will / old / crossmatch.ccio / ozstream.hh
pilot / will / old / crossmatch.ccstring_util.hh
pilot / will / old / crossmatch_3e.ccexcn / Exceptions.hh
pilot / will / old / crossmatch_3e.ccio / izstream.hh
pilot / will / old / crossmatch_3e.ccio / ozstream.hh
pilot / will / old / crossmatch_3e.ccstring_util.hh
pilot / will / old / crossmatch_3e.ccexit.hh
pilot / will / old / crossmatch_d2.ccexcn / Exceptions.hh
pilot / will / old / crossmatch_d2.ccio / izstream.hh
pilot / will / old / crossmatch_d2.ccio / ozstream.hh
pilot / will / old / crossmatch_d2.ccstring_util.hh
pilot / will / old / CXdock.ccio / izstream.hh
pilot / will / old / CXdock.ccio / ozstream.hh
pilot / will / old / cxdock_sheet.ccio / izstream.hh
pilot / will / old / cxdock_sheet.ccio / ozstream.hh
pilot / will / old / CXdock_TMP.ccio / izstream.hh
pilot / will / old / CXdock_TMP.ccio / ozstream.hh
pilot / will / old / cycgly_bbg8t3a.ccio / izstream.hh
pilot / will / old / cycgly_bbg8t3a.ccio / ozstream.hh
pilot / will / old / cycgly_canonical.ccio / izstream.hh
pilot / will / old / cycgly_canonical.ccio / ozstream.hh
pilot / will / old / cycgly_superimpose.ccio / izstream.hh
pilot / will / old / cycgly_superimpose.ccio / ozstream.hh
pilot / will / old / cycgly_target.ccio / izstream.hh
pilot / will / old / cycgly_target.ccio / ozstream.hh
pilot / will / old / cycsamp.ccio / izstream.hh
pilot / will / old / cycsamp.ccio / ozstream.hh
pilot / will / old / d3_bpy_linker.ccio / izstream.hh
pilot / will / old / d3_bpy_linker.ccio / ozstream.hh
pilot / will / old / design_DL.ccio / izstream.hh
pilot / will / old / design_DL.ccvector0.hh
pilot / will / old / design_DL.ccvector1.hh
pilot / will / old / design_frags.ccstring_util.hh
pilot / will / old / design_frags.ccvector1.hh
pilot / will / old / designability_stats.ccio / izstream.hh
pilot / will / old / designability_stats.ccio / ozstream.hh
pilot / will / old / disulf_frag_match.ccio / izstream.hh
pilot / will / old / disulf_frag_match.ccio / ozstream.hh
pilot / will / old / disulf_frag_search.ccio / izstream.hh
pilot / will / old / disulf_frag_search.ccio / ozstream.hh
pilot / will / old / disulf_stat.ccvector1.hh
pilot / will / old / dock_asym.ccio / izstream.hh
pilot / will / old / dock_asym.ccio / ozstream.hh
pilot / will / old / dubois.ccio / izstream.hh
pilot / will / old / dubois.ccio / ozstream.hh
pilot / will / old / dubois_graft.ccio / izstream.hh
pilot / will / old / dubois_graft.ccio / ozstream.hh
pilot / will / old / dubois_graft.ccstring_util.hh
pilot / will / old / dump_res.ccio / izstream.hh
pilot / will / old / dump_res.ccio / ozstream.hh
pilot / will / old / dump_res.ccstring_util.hh
pilot / will / old / dxdock.ccio / izstream.hh
pilot / will / old / dxdock.ccio / ozstream.hh
pilot / will / old / dxdock_movie.ccio / izstream.hh
pilot / will / old / dxdock_movie.ccio / ozstream.hh
pilot / will / old / flail.ccio / ozstream.hh
pilot / will / old / fnd_dutton.ccio / izstream.hh
pilot / will / old / fnd_dutton.ccio / ozstream.hh
pilot / will / old / for_dkim.ccvector1.hh
pilot / will / old / for_tim.ccio / ozstream.hh
pilot / will / old / frag_util.hhvector1.hh
pilot / will / old / FunGroupTK.ccgraph / Graph.hh
pilot / will / old / FunGroupTK.ccvector0.hh
pilot / will / old / FunGroupTK.ccvector1.hh
pilot / will / old / FunGroupTK_test.ccgraph / Graph.hh
pilot / will / old / FunGroupTK_test.ccvector1.hh
pilot / will / old / gen3bpy.ccio / izstream.hh
pilot / will / old / gen3bpy.ccio / ozstream.hh
pilot / will / old / gen3bpy.ccvector0.hh
pilot / will / old / gen3bpy.ccvector1.hh
pilot / will / old / gen_cyc_gly.ccio / izstream.hh
pilot / will / old / gen_cyc_gly.ccio / ozstream.hh
pilot / will / old / gen_cyc_gly_cst.ccio / izstream.hh
pilot / will / old / gen_cyc_gly_cst.ccio / ozstream.hh
pilot / will / old / gen_d2.ccgraph / Graph.hh
pilot / will / old / gen_d2.ccio / izstream.hh
pilot / will / old / gen_d2.ccio / ozstream.hh
pilot / will / old / gen_d2.ccvector0.hh
pilot / will / old / gen_d2.ccvector1.hh
pilot / will / old / gen_d2_3his_ooc.ccgraph / Graph.hh
pilot / will / old / gen_d2_3his_ooc.ccio / izstream.hh
pilot / will / old / gen_d2_3his_ooc.ccio / ozstream.hh
pilot / will / old / gen_d2_4his.ccgraph / Graph.hh
pilot / will / old / gen_d2_4his.ccio / izstream.hh
pilot / will / old / gen_d2_4his.ccio / ozstream.hh
pilot / will / old / gen_d2_4his.ccvector0.hh
pilot / will / old / gen_d2_4his.ccvector1.hh
pilot / will / old / gen_d2_hhhc.ccgraph / Graph.hh
pilot / will / old / gen_d2_hhhc.ccio / izstream.hh
pilot / will / old / gen_d2_hhhc.ccio / ozstream.hh
pilot / will / old / gen_d2_hhhc.ccvector0.hh
pilot / will / old / gen_d2_hhhc.ccvector1.hh
pilot / will / old / gen_disulf_homodimer.ccgraph / Graph.hh
pilot / will / old / gen_disulf_homodimer.ccio / izstream.hh
pilot / will / old / gen_disulf_homodimer.ccvector0.hh
pilot / will / old / gen_disulf_homodimer.ccvector1.hh
pilot / will / old / gen_homo_hc.ccio / izstream.hh
pilot / will / old / gen_homo_hc.ccvector0.hh
pilot / will / old / gen_homo_hc.ccvector1.hh
pilot / will / old / gen_trimer_disulf.ccgraph / Graph.hh
pilot / will / old / gen_trimer_disulf.ccio / ozstream.hh
pilot / will / old / gen_trimer_disulf.ccvector0.hh
pilot / will / old / gen_trimer_disulf.ccvector1.hh
pilot / will / old / gen_xtal_dimer_from_trimer.ccio / ozstream.hh
pilot / will / old / gen_xtal_dimer_from_trimer.ccstring_constants.hh
pilot / will / old / gen_xtal_dimer_from_trimer.ccvector0.hh
pilot / will / old / gen_xtal_dimer_from_trimer.ccvector1.hh
pilot / will / old / genI213.ccio / ozstream.hh
pilot / will / old / genI213.ccstring_constants.hh
pilot / will / old / genI213.ccvector0.hh
pilot / will / old / genI213.ccvector1.hh
pilot / will / old / genI213_2comp.ccio / izstream.hh
pilot / will / old / genI213_2comp.ccio / ozstream.hh
pilot / will / old / genI213_2comp.ccstring_constants.hh
pilot / will / old / genI213_2comp.ccvector0.hh
pilot / will / old / genI213_2comp.ccvector1.hh
pilot / will / old / genI213_2dsf.ccio / izstream.hh
pilot / will / old / genI213_2dsf.ccvector0.hh
pilot / will / old / genI213_2dsf.ccvector1.hh
pilot / will / old / genI213_gensym.ccio / izstream.hh
pilot / will / old / genI213_gensym.ccio / ozstream.hh
pilot / will / old / genI213_gensym.ccstring_constants.hh
pilot / will / old / genI213_nocontacts.ccio / izstream.hh
pilot / will / old / genI213_nocontacts.ccio / ozstream.hh
pilot / will / old / genI213_nocontacts.ccstring_constants.hh
pilot / will / old / genI213_nocontacts.ccvector0.hh
pilot / will / old / genI213_nocontacts.ccvector1.hh
pilot / will / old / genmatch.ccio / izstream.hh
pilot / will / old / genmatch.ccio / ozstream.hh
pilot / will / old / genmatch_3bpy.ccio / izstream.hh
pilot / will / old / genmatch_3bpy.ccio / ozstream.hh
pilot / will / old / genmatch_d6_bhhcg.ccio / izstream.hh
pilot / will / old / genmatch_d6_bhhcg.ccio / ozstream.hh
pilot / will / old / genmatch_d6_bpy.ccio / izstream.hh
pilot / will / old / genmatch_d6_bpy.ccio / ozstream.hh
pilot / will / old / genmatch_m8.ccio / izstream.hh
pilot / will / old / genmatch_m8.ccio / ozstream.hh
pilot / will / old / genP23.ccio / izstream.hh
pilot / will / old / genP23.ccio / ozstream.hh
pilot / will / old / genP23.ccstring_constants.hh
pilot / will / old / gensym_3bpy_from_dimer.ccgraph / Graph.hh
pilot / will / old / gensym_3bpy_from_dimer.ccio / izstream.hh
pilot / will / old / gensym_3bpy_from_dimer.ccio / ozstream.hh
pilot / will / old / gentetra.ccio / izstream.hh
pilot / will / old / gentetra.ccio / ozstream.hh
pilot / will / old / gentetra_bpy_from_znhis.ccio / izstream.hh
pilot / will / old / gentetra_bpy_from_znhis.ccvector0.hh
pilot / will / old / gentetra_bpy_from_znhis.ccvector1.hh
pilot / will / old / gentetra_from_trimer.ccio / izstream.hh
pilot / will / old / gentetra_from_trimer.ccvector0.hh
pilot / will / old / gentetra_from_trimer.ccvector1.hh
pilot / will / old / getDistConstraints.ccio / izstream.hh
pilot / will / old / getDistConstraints.ccio / ozstream.hh
pilot / will / old / hczndimer.ccgraph / Graph.hh
pilot / will / old / hczndimer.ccio / izstream.hh
pilot / will / old / hczndimer.ccio / ozstream.hh
pilot / will / old / helix_assembly.ccio / izstream.hh
pilot / will / old / helix_assembly.ccio / ozstream.hh
pilot / will / old / helix_assembly.ccfixedsizearray1.hh
pilot / will / old / heterodock.ccio / izstream.hh
pilot / will / old / heterodock.ccio / ozstream.hh
pilot / will / old / holes2_training_data.ccio / ozstream.hh
pilot / will / old / holes_pbpdb.ccio / izstream.hh
pilot / will / old / holes_pbpdb.ccio / ozstream.hh
pilot / will / old / holes_test.ccio / izstream.hh
pilot / will / old / holes_test.ccstring_util.hh
pilot / will / old / holes_test.ccvector1.hh
pilot / will / old / holes_training_data.ccio / izstream.hh
pilot / will / old / holes_training_data.ccio / ozstream.hh
pilot / will / old / hubabinitio.ccio / izstream.hh
pilot / will / old / hubabinitio.ccio / ozstream.hh
pilot / will / old / hubdenovo.ccio / izstream.hh
pilot / will / old / hubdenovo.ccio / ozstream.hh
pilot / will / old / hubdenovo.ccstream_util.hh
pilot / will / old / hubfragdesign.ccio / izstream.hh
pilot / will / old / hubfragdesign.ccio / ozstream.hh
pilot / will / old / IKFGDB.ccgraph / Graph.hh
pilot / will / old / IKFGDB.ccvector0.hh
pilot / will / old / IKFGDB.ccvector1.hh
pilot / will / old / isct_test.ccstring_util.hh
pilot / will / old / isct_test.ccvector1.hh
pilot / will / old / make_symmetric_task_test.ccvector1.hh
pilot / will / old / match_disulf.ccVirtualBase.hh
pilot / will / old / match_disulf.ccio / izstream.hh
pilot / will / old / minimize_cavities.ccpointer / owning_ptr.hh
pilot / will / old / minimize_cavities.ccvector1.hh
pilot / will / old / minimize_cavities.ccstring_util.hh
pilot / will / old / minimize_cavities.ccio / izstream.hh
pilot / will / old / mkresfile_i213.ccio / izstream.hh
pilot / will / old / mkresfile_i213.ccio / ozstream.hh
pilot / will / old / mkresfile_i213.ccio / mpistream.hh
pilot / will / old / mkresfile_i213.ccstring_util.hh
pilot / will / old / motif_denovo_hb.ccgraph / Graph.hh
pilot / will / old / motif_denovo_hb.ccio / izstream.hh
pilot / will / old / motif_denovo_hb.ccio / ozstream.hh
pilot / will / old / motif_hash_util.ccio / izstream.hh
pilot / will / old / motif_hash_util.ccio / ozstream.hh
pilot / will / old / motif_hash_util.ccfixedsizearray1.hh
pilot / will / old / motif_hash_util.ccfile / file_sys_util.hh
pilot / will / old / nisod.ccio / izstream.hh
pilot / will / old / nisod.ccio / ozstream.hh
pilot / will / old / organopv.ccio / izstream.hh
pilot / will / old / organopv.ccio / ozstream.hh
pilot / will / old / pack_ddg.ccvector1.hh
pilot / will / old / pack_stat_energy.ccio / izstream.hh
pilot / will / old / pack_stat_energy.ccvector1.hh
pilot / will / old / pentcb.ccio / izstream.hh
pilot / will / old / pentcb.ccio / ozstream.hh
pilot / will / old / pentcb_design.ccio / izstream.hh
pilot / will / old / pentcb_design.ccio / ozstream.hh
pilot / will / old / pentcb_test.ccio / izstream.hh
pilot / will / old / pentcb_test.ccio / ozstream.hh
pilot / will / old / pick_normal_sampling.hhvector1.hh
pilot / will / old / pilot_packstat.ccvector1.hh
pilot / will / old / pilot_packstat.ccfile / FileName.hh
pilot / will / old / pilot_packstat.ccio / izstream.hh
pilot / will / old / pilot_packstat.ccio / ozstream.hh
pilot / will / old / print_dunscores.ccio / izstream.hh
pilot / will / old / print_dunscores.ccvector1.hh
pilot / will / old / rblinker.ccio / izstream.hh
pilot / will / old / rblinker.ccio / ozstream.hh
pilot / will / old / rblinker2_overlay_bound.ccio / izstream.hh
pilot / will / old / rblinker2_test.ccio / izstream.hh
pilot / will / old / rblinker2_test.ccio / ozstream.hh
pilot / will / old / rescore_i213.ccio / izstream.hh
pilot / will / old / rescore_i213.ccio / ozstream.hh
pilot / will / old / rescore_i213.ccio / mpistream.hh
pilot / will / old / rescore_i213.ccstring_util.hh
pilot / will / old / rsd_canonical_units.ccio / izstream.hh
pilot / will / old / rsd_canonical_units.ccio / ozstream.hh
pilot / will / old / scheme_v0_score.ccio / ozstream.hh
pilot / will / old / scheme_v0_score.ccio / izstream.hh
pilot / will / old / scheme_v0_score.ccfile / file_sys_util.hh
pilot / will / old / score_pdbs.ccvector1.hh
pilot / will / old / sf4_hash.ccio / izstream.hh
pilot / will / old / sf4_hash.ccio / ozstream.hh
pilot / will / old / sicdock.ccio / izstream.hh
pilot / will / old / sicdock.ccio / ozstream.hh
pilot / will / old / smhybrid.ccio / izstream.hh
pilot / will / old / smhybrid.ccio / ozstream.hh
pilot / will / old / smhybrid.ccstring_constants.hh
pilot / will / old / sphere_hierarchy.ccio / izstream.hh
pilot / will / old / sphere_hierarchy.ccio / ozstream.hh
pilot / will / old / SphereSample.hhvector1.hh
pilot / will / old / spiro.ccio / izstream.hh
pilot / will / old / spiro.ccio / mpistream.hh
pilot / will / old / symdock_enum_3_1.ccio / ozstream.hh
pilot / will / old / symdock_enum_3_1.ccstring_util.hh
pilot / will / old / symdock_enum_3_1.ccvector1.hh
pilot / will / old / symdock_hybrid.ccvector1.hh
pilot / will / old / symdock_hybrid_cc3.ccvector1.hh
pilot / will / old / tcdock.ccio / ozstream.hh
pilot / will / old / tcdock.ccio / izstream.hh
pilot / will / old / tcdock.ccstring_util.hh
pilot / will / old / tcdock.ccfile / file_sys_util.hh
pilot / will / old / tcdock.ccvector1.hh
pilot / will / old / test_ikrs.ccgraph / Graph.hh
pilot / will / old / test_ikrs.ccio / izstream.hh
pilot / will / old / test_ikrs.ccio / ozstream.hh
pilot / will / old / test_ikrs.ccvector0.hh
pilot / will / old / test_ikrs.ccvector1.hh
pilot / will / old / test_ikrs2.ccgraph / Graph.hh
pilot / will / old / test_ikrs2.ccio / izstream.hh
pilot / will / old / test_ikrs2.ccio / ozstream.hh
pilot / will / old / test_ikrs_flymake.ccio / izstream.hh
pilot / will / old / test_ikrs_flymake.ccio / ozstream.hh
pilot / will / old / test_kc.ccvector1.hh
pilot / will / old / test_kc.ccio / ozstream.hh
pilot / will / old / test_leerichards.ccio / izstream.hh
pilot / will / old / test_leerichards.ccio / ozstream.hh
pilot / will / old / test_leerichards.ccfile / file_sys_util.hh
pilot / will / old / test_string.ccstring_util.hh
pilot / will / old / ward_design.ccio / izstream.hh
pilot / will / old / ward_design.ccio / ozstream.hh
pilot / will / old / ward_design.ccstring_util.hh
pilot / will / old / will_mutalyze.ccio / izstream.hh
pilot / will / old / will_mutalyze.ccio / ozstream.hh
pilot / will / old / will_mutalyze.ccio / mpistream.hh
pilot / will / old / will_mutalyze.ccstring_util.hh
pilot / will / old / willmatch_2d6_bhe.ccio / izstream.hh
pilot / will / old / willmatch_2d6_bhe.ccio / ozstream.hh
pilot / will / old / willmatch_chorismate.ccio / izstream.hh
pilot / will / old / willmatch_chorismate.ccio / ozstream.hh
pilot / will / old / willmatch_chorismate.ccvector1.hh
pilot / will / old / willmatch_d6_bpy.ccio / izstream.hh
pilot / will / old / willmatch_d6_bpy.ccio / ozstream.hh
pilot / will / old / willmatch_d6_bpy.ccvector0.hh
pilot / will / old / willmatch_d6_bpy.ccvector1.hh
pilot / will / old / yeates_align.ccio / ozstream.hh
pilot / will / old / yeates_align.ccvector1.hh
pilot / ralford / archive / old_applications / membrane_ddG.ccexcn / Exceptions.hh
pilot / ralford / archive / old_applications / membrane_docking.ccpointer / owning_ptr.hh
pilot / ralford / archive / old_applications / membrane_docking.ccvector1.hh
pilot / ralford / archive / old_applications / membrane_docking.ccexcn / Exceptions.hh
pilot / ralford / archive / old_applications / membrane_relax.ccvector1.hh
pilot / ralford / archive / old_applications / membrane_relax.ccexcn / Exceptions.hh
pilot / ralford / archive / old_applications / membrane_relax2.ccvector1.hh
pilot / ralford / archive / old_applications / membrane_relax2.ccexcn / Exceptions.hh
pilot / ralford / archive / old_applications / membrane_relax2.ccpointer / owning_ptr.hh
pilot / ralford / archive / old_applications / membrane_sampling.ccvector1.hh
pilot / ralford / archive / old_applications / membrane_sampling.ccexcn / Exceptions.hh
pilot / ralford / archive / old_applications / membrane_sampling.ccpointer / owning_ptr.hh
pilot / olli / cloud_app.ccexcn / Exceptions.hh
pilot / olli / cloud_app.ccvector1.hh
pilot / olli / cloud_app.ccio / ozstream.hh
pilot / olli / cloud_app.ccio / izstream.hh
pilot / olli / FragsToAtomDist.ccexcn / Exceptions.hh
pilot / olli / r_abrelax.ccexcn / Exceptions.hh
pilot / olli / r_assign_clusters.ccio / ozstream.hh
pilot / olli / r_assign_clusters.ccio / izstream.hh
pilot / olli / r_assign_clusters.ccvector1.hh
pilot / olli / r_assign_clusters.ccexcn / Exceptions.hh
pilot / olli / r_assign_clusters.ccexit.hh
pilot / olli / r_broker.ccexcn / Exceptions.hh
pilot / olli / r_build_hotspot_loops.ccexcn / Exceptions.hh
pilot / olli / r_build_hotspot_loops.ccexit.hh
pilot / olli / r_build_hotspot_loops.ccvector1.hh
pilot / olli / r_check_chainbreak.ccexcn / Exceptions.hh
pilot / olli / r_check_chainbreak.ccvector1.hh
pilot / olli / r_convert_frags.ccexcn / Exceptions.hh
pilot / olli / r_count_neighbours.ccvector1.hh
pilot / olli / r_count_neighbours.ccexcn / Exceptions.hh
pilot / olli / r_count_neighbours.ccexit.hh
pilot / olli / r_count_neighbours.ccio / mpistream.hh
pilot / olli / r_coupled_sidechain.ccvector1.hh
pilot / olli / r_coupled_sidechain.ccexcn / Exceptions.hh
pilot / olli / r_cst_tool.ccio / ozstream.hh
pilot / olli / r_cst_tool.ccio / izstream.hh
pilot / olli / r_cst_tool.ccvector1.hh
pilot / olli / r_cst_tool.ccexcn / Exceptions.hh
pilot / olli / r_dock_tempered.ccexcn / Exceptions.hh
pilot / olli / r_frag_picker.ccio / izstream.hh
pilot / olli / r_frag_picker.ccio / ozstream.hh
pilot / olli / r_frag_picker.ccexcn / Exceptions.hh
pilot / olli / r_frag_quality.ccexcn / Exceptions.hh
pilot / olli / r_frag_quality.ccio / izstream.hh
pilot / olli / r_frag_quality.ccio / ozstream.hh
pilot / olli / r_frag_quality.ccvector1.hh
pilot / olli / r_local_rdc.ccio / izstream.hh
pilot / olli / r_local_rdc.ccio / ozstream.hh
pilot / olli / r_local_rdc.ccexcn / Exceptions.hh
pilot / olli / r_min_check.ccio / ozstream.hh
pilot / olli / r_min_check.ccvector1.hh
pilot / olli / r_min_check.ccexit.hh
pilot / olli / r_min_check.ccexcn / Exceptions.hh
pilot / olli / r_mpi.ccio / ozstream.hh
pilot / olli / r_mpi.ccvector1.hh
pilot / olli / r_mpi.ccexit.hh
pilot / olli / r_mpi.ccexcn / Exceptions.hh
pilot / olli / r_parse_foldtree.ccexcn / Exceptions.hh
pilot / olli / r_parse_foldtree.ccio / izstream.hh
pilot / olli / r_pdb2top.ccio / ozstream.hh
pilot / olli / r_pdb2top.ccio / izstream.hh
pilot / olli / r_pdb2top.ccvector1.hh
pilot / olli / r_pdb2top.ccexcn / Exceptions.hh
pilot / olli / r_play_with_etables.ccexcn / Exceptions.hh
pilot / olli / r_rmsf.ccio / ozstream.hh
pilot / olli / r_rmsf.ccvector1.hh
pilot / olli / r_rmsf.ccexit.hh
pilot / olli / r_rmsf.ccexcn / Exceptions.hh
pilot / olli / r_score.ccvector1.hh
pilot / olli / r_score.ccexit.hh
pilot / olli / r_score.ccexcn / Exceptions.hh
pilot / olli / r_score.ccio / mpistream.hh
pilot / olli / r_score_rdc.ccio / ozstream.hh
pilot / olli / r_score_rdc.ccvector1.hh
pilot / olli / r_score_rdc.ccexit.hh
pilot / olli / r_score_rdc.ccexcn / Exceptions.hh
pilot / olli / r_tempered_sidechains.ccexcn / Exceptions.hh
pilot / olli / r_trjconv.ccexcn / Exceptions.hh
pilot / olli / r_trjconv.ccvector1.hh
pilot / olungu / multidomain_switch.ccexcn / Exceptions.hh
pilot / olungu / sasa_interface.ccexcn / Exceptions.hh
pilot / olungu / sasa_interface.ccfile / FileName.hh
pilot / olungu / Superimpose_Pdbs.ccexcn / Exceptions.hh
pilot / olungu / Superimpose_Pdbs.ccfile / FileName.hh
pilot / olungu / Superimpose_Pdbs.ccvector1.functions.hh
pilot / olungu / Superimpose_Pdbs.ccvector1.hh
pilot / olungu / Superimpose_Pdbs.ccio / izstream.hh
pilot / opt_e / optE_simple.ccexcn / Exceptions.hh
pilot / opt_e / optE_simple.ccgraph / Graph.hh
pilot / opt_e / optE_simple.ccvector1.hh
pilot / opt_e / optE_simple.ccexit.hh
pilot / opt_e / optE_simple.ccpointer / owning_ptr.hh
pilot / opt_e / optE_simple.ccVirtualBase.hh
pilot / optE / optE_simple.ccexcn / Exceptions.hh
pilot / optE / optE_simple.ccgraph / Graph.hh
pilot / optE / optE_simple.ccvector1.hh
pilot / optE / optE_simple.ccexit.hh
pilot / optE / optE_simple.ccpointer / owning_ptr.hh
pilot / optE / optE_simple.ccVirtualBase.hh
pilot / kale / kic_refactor / original / LoopRelaxMover.cctag / Tag.hh
pilot / kale / kic_refactor / original / LoopRelaxMover.ccexit.hh
pilot / kale / kic_refactor / original / LoopRelaxMover.ccBound.hh
pilot / kale / kic_refactor / original / LoopRelaxMover.ccvector0.hh
pilot / kale / kic_refactor / original / LoopRelaxMover.ccvector1.hh
pilot / kale / kic_refactor / original / LoopRelaxMover.cckeys / SmallKeyVector.hh
pilot / kale / kic_refactor / original / LoopRelaxMover.ccoptions / BooleanOption.hh
pilot / kale / kic_refactor / original / perturb_LoopMover_KIC.ccvector0.hh
pilot / kale / kic_refactor / original / perturb_LoopMover_KIC.ccvector1.hh
pilot / kale / kic_refactor / original / refine_LoopMover_KIC.ccvector0.hh
pilot / kale / kic_refactor / original / refine_LoopMover_KIC.ccvector1.hh
pilot / pacheco / design_glycans.ccpointer / owning_ptr.hh
pilot / pacheco / design_glycans.ccexcn / Exceptions.hh
pilot / parin / parin_test.ccexcn / Exceptions.hh
pilot / parin / parin_test.ccvector1.hh
pilot / parin / parin_test.ccio / ozstream.hh
pilot / parin / parin_test.ccio / izstream.hh
public / pepspec / pepspec.ccvector1.hh
public / pepspec / pepspec.ccfile / file_sys_util.hh
public / pepspec / pepspec.ccexcn / Exceptions.hh
public / pepspec / pepspec_anchor_dock.ccvector1.hh
public / pepspec / pepspec_anchor_dock.ccfile / FileName.hh
public / pepspec / pepspec_anchor_dock.ccexcn / Exceptions.hh
pilot / doug / peptoid_rotlibs / peptoid_rotlib_test1.ccgraph / Graph.hh
pilot / doug / peptoid_rotlibs / peptoid_rotlib_test1.ccio / izstream.hh
pilot / doug / peptoid_rotlibs / peptoid_rotlib_test3.ccgraph / Graph.hh
pilot / doug / peptoid_rotlibs / peptoid_rotlib_test3.ccio / izstream.hh
benchmark / performance / InteractionGraph.bench.hhgraph / Graph.fwd.hh
benchmark / performance / OptionCollection.bench.hhkeys / KeyLookup.hh
benchmark / performance / performance_benchmark.ccexcn / Exceptions.hh
benchmark / performance / performance_benchmark.ccfile / file_sys_util.hh
benchmark / performance / performance_benchmark.ccexit.hh
benchmark / performance / ScoreEach.bench.hhvector1.hh
benchmark / performance / ScoreEach.bench.hhexcn / Exceptions.hh
benchmark / performance / xml_parsing.bench.hhtag / Tag.hh
pilot / phil / analyze_dna.ccexcn / Exceptions.hh
pilot / phil / capri15.ccexcn / Exceptions.hh
pilot / phil / capri15.ccvector1.hh
pilot / phil / capri15_scoring.hhvector1.hh
pilot / phil / dimer_relax.ccexcn / Exceptions.hh
pilot / phil / dna_design_test.ccexcn / Exceptions.hh
pilot / phil / dna_design_test.ccvector1.hh
pilot / phil / dna_design_test.ccvector1.functions.hh
pilot / phil / dna_dr_test.ccexcn / Exceptions.hh
pilot / phil / dna_dr_test.ccvector1.hh
pilot / phil / dna_relax.ccexcn / Exceptions.hh
pilot / phil / dna_spec_test.ccexcn / Exceptions.hh
pilot / phil / dna_spec_test.ccvector1.hh
pilot / phil / loop_model.hhvector1.hh
pilot / phil / motif_scan.ccexcn / Exceptions.hh
pilot / phil / motif_scan.ccvector1.hh
pilot / phil / phil.hhvector1.functions.hh
pilot / phil / phil.hhtools / make_vector1.hh
pilot / phil / phil.hhtools / make_map.hh
pilot / phil / repeat_demo.ccexcn / Exceptions.hh
pilot / phil / simple_dna_regression_test.ccexcn / Exceptions.hh
pilot / phil / simple_dna_regression_test.ccvector1.hh
pilot / phil / test1.ccvector1.hh
pilot / phil / test1.ccexcn / Exceptions.hh
pilot / phil / zf_relax.ccexcn / Exceptions.hh
public / pocket / pocket_measure.ccexcn / Exceptions.hh
public / pocket / pocket_relax.ccexcn / Exceptions.hh
public / pocket / pocket_suggest_target_residues_by_ddg.ccvector1.hh
public / pocket / pocket_suggest_target_residues_by_ddg.ccstring_util.hh
public / pocket / pocket_suggest_target_residues_by_ddg.ccexcn / Exceptions.hh
public / pose_sewing / MakeSegmentFile.ccio / ozstream.hh
public / pose_sewing / MakeSegmentFile.ccio / izstream.hh
public / pose_sewing / MakeSegmentFile.ccfile / file_sys_util.hh
public / pose_sewing / MakeSegmentFile.ccfile / FileName.hh
public / pose_sewing / MakeSegmentFile.ccpointer / memory.hh
public / pose_sewing / MakeSegmentFile.ccpointer / owning_ptr.hh
public / pose_sewing / MakeSegmentFile.ccvector1.hh
public / pose_sewing / MakeSegmentFile.ccoptions / OptionCollection.fwd.hh
public / pose_sewing / MakeSegmentFile.ccoptions / keys / OptionKeyList.fwd.hh
public / pose_sewing / MakeSegmentFile.fwd.hhpointer / owning_ptr.hh
public / pose_sewing / MakeSegmentFile.hhpointer / owning_ptr.hh
public / pose_sewing / MakeSegmentFile.hhVirtualBase.hh
pilot / possu / build_repeats.ccfile / FileName.hh
pilot / possu / build_repeats.ccio / izstream.hh
pilot / possu / build_repeats.ccoptions / keys / OptionKey.hh
pilot / possu / helical_param.ccfile / FileName.hh
pilot / possu / helical_param.ccio / izstream.hh
pilot / possu / helical_param.ccoptions / keys / OptionKey.hh
public / post-translational_modification / DNA_methylation.ccpointer / owning_ptr.hh
public / post-translational_modification / DNA_methylation.ccexcn / Exceptions.hh
public / post-translational_modification / glycosyltransfer.ccpointer / owning_ptr.hh
public / post-translational_modification / glycosyltransfer.ccexcn / Exceptions.hh
public / post-translational_modification / N-terminal_acetylation.ccpointer / owning_ptr.hh
public / post-translational_modification / N-terminal_acetylation.ccexcn / Exceptions.hh
public / post-translational_modification / phosphorylation.ccpointer / owning_ptr.hh
public / post-translational_modification / phosphorylation.ccexcn / Exceptions.hh
pilot / ptconway / batchrelax_mpi.ccpointer / owning_ptr.hh
pilot / ptconway / batchrelax_mpi.ccexit.hh
pilot / ptconway / batchrelax_mpi.ccexcn / Exceptions.hh
pilot / ptconway / batchrelax_mpi.ccstring_util.hh
pilot / ptconway / elec_dens_rot_recov.ccexcn / Exceptions.hh
pilot / ptconway / elec_dens_rot_recov.ccvector1.hh
public / AbinitioRelax.ccexcn / Exceptions.hh
public / AbinitioRelax.ccvector1.hh
public / backrub.ccexcn / Exceptions.hh
public / calculate_sasa.ccvector1.hh
public / calculate_sasa.ccexcn / Exceptions.hh
public / combine_silent.ccexcn / Exceptions.hh
public / extract_pdbs.ccvector1.hh
public / extract_pdbs.ccio / izstream.hh
public / extract_pdbs.ccexcn / Exceptions.hh
public / fragment_picker.ccexcn / Exceptions.hh
public / idealize_jd2.ccexcn / Exceptions.hh
public / minimize.ccexcn / Exceptions.hh
public / minimize_ppi.ccexcn / Exceptions.hh
public / minimize_ppi.ccvector1.hh
public / minimize_ppi.ccio / ozstream.hh
public / mutate.ccexcn / Exceptions.hh
public / mutate.ccstring_util.hh
public / mutate.ccfile / file_sys_util.hh
public / mutate.ccio / util.hh
public / packstat.ccvector1.hh
public / packstat.ccfile / FileName.hh
public / packstat.ccio / izstream.hh
public / packstat.ccio / ozstream.hh
public / packstat.ccexcn / Exceptions.hh
public / pH_protocol.ccvector1.hh
public / pH_protocol.ccio / ozstream.hh
public / relax.ccexcn / Exceptions.hh
public / remodel.ccfile / FileName.hh
public / remodel.ccio / izstream.hh
public / remodel.ccexcn / Exceptions.hh
public / restype_converter.ccexcn / Exceptions.hh
public / sequence_tolerance.ccfile / FileName.hh
public / sequence_tolerance.ccvector1.hh
public / sequence_tolerance.ccexcn / Exceptions.hh
public / struc_set_fragment_picker.ccvector1.hh
public / struc_set_fragment_picker.ccfile / FileName.hh
public / struc_set_fragment_picker.ccio / ozstream.hh
public / struc_set_fragment_picker.ccio / izstream.hh
public / SymDock.ccexcn / Exceptions.hh
public / vip.ccstring_util.hh
public / vip.ccexcn / Exceptions.hh
pilot / will / old / query_lang / filter.ccpointer / owning_ptr.hh
pilot / will / old / query_lang / metric.ccpointer / owning_ptr.hh
pilot / ragul / get_pharmacophore_without_bound_rna.ccvector1.hh
pilot / ragul / get_pharmacophore_without_bound_rna.ccio / ozstream.hh
pilot / ragul / get_rna_pharmacophore.ccvector1.hh
pilot / ragul / get_rna_pharmacophore.ccio / ozstream.hh
pilot / ragul / get_rna_pharmacophore_with_water.ccvector1.hh
pilot / ragul / get_rna_pharmacophore_with_water.ccio / ozstream.hh
pilot / ragul / get_rna_ring_sasa.ccvector1.hh
pilot / ragul / ragul_analyze_tcr_interface.ccexcn / Exceptions.hh
pilot / ragul / ragul_calculate_ligand_rmsd.ccoptions / StringOption.hh
pilot / ragul / ragul_darc_minimize.ccexcn / Exceptions.hh
pilot / ragul / ragul_darc_minimize.ccvector1.hh
pilot / ragul / ragul_darc_minimize.ccio / ozstream.hh
pilot / ragul / ragul_darc_optimize_weights.ccvector1.hh
pilot / ragul / ragul_darc_optimize_weights.ccio / ozstream.hh
pilot / ragul / ragul_darc_run_with_delphi.ccfile / file_sys_util.hh
pilot / ragul / ragul_get_aa_code.ccvector1.hh
pilot / ragul / ragul_get_aa_code.ccio / izstream.hh
pilot / ragul / ragul_get_connolly_surface.ccio / ozstream.hh
pilot / ragul / ragul_get_connolly_surface.ccoptions / StringOption.hh
pilot / ragul / ragul_get_delphi_phimap.ccfile / file_sys_util.hh
pilot / ragul / ragul_get_ligand_hbonds.ccvector1.hh
pilot / ragul / ragul_get_ligand_hbonds.ccio / ozstream.hh
pilot / ragul / ragul_get_ligand_sasa.ccvector1.hh
pilot / ragul / ragul_get_molecular_surface.ccio / ozstream.hh
pilot / ragul / ragul_get_molecular_surface.ccoptions / StringOption.hh
pilot / ragul / ragul_rosetta_dump_pdb.ccexcn / Exceptions.hh
pilot / ragul / ragul_test_darc.ccfile / file_sys_util.hh
pilot / ragul / ragul_test_darc.ccnumbers.hh
pilot / ragul / sarah_get_pharmacophores.ccvector1.hh
pilot / ragul / sarah_get_pharmacophores.ccio / ozstream.hh
pilot / ragul / simon_darc_minimize.ccexcn / Exceptions.hh
pilot / ragul / simon_darc_minimize.ccvector1.hh
pilot / ragul / simon_darc_minimize.ccio / ozstream.hh
pilot / ralford / color_by_lipid_type.ccexcn / Exceptions.hh
pilot / ralford / color_by_lipid_type.ccstring_util.hh
pilot / ralford / enumerate_rotamers.ccexcn / Exceptions.hh
pilot / ralford / find_optimal_hydrophobic_thk.ccexcn / Exceptions.hh
pilot / ralford / find_optimal_hydrophobic_thk.ccio / ozstream.hh
pilot / ralford / find_optimal_hydrophobic_thk.ccstring_util.hh
pilot / ralford / mp_rsd_energies.ccvector1.hh
pilot / ralford / mp_rsd_energies.ccfile / file_sys_util.hh
pilot / ralford / version_mpscorefxn.ccsort_predicates.hh
pilot / ralford / version_mpscorefxn.ccstring_util.hh
pilot / ralford / version_mpscorefxn.ccvector1.hh
pilot / rayyrw / assemble_placed_fragments.ccvector1.hh
pilot / rayyrw / assemble_placed_fragments.ccfile / file_sys_util.hh
pilot / rayyrw / assemble_placed_fragments.ccio / ozstream.hh
pilot / rayyrw / cal_nonoverlap_scores.ccvector1.hh
pilot / rayyrw / cal_nonoverlap_scores.ccfile / FileName.hh
pilot / rayyrw / cal_nonoverlap_scores.ccfile / file_sys_util.hh
pilot / rayyrw / cal_nonoverlap_scores.ccstring_util.hh
pilot / rayyrw / cal_nonoverlap_scores.ccio / izstream.hh
pilot / rayyrw / cal_nonoverlap_scores.ccio / ozstream.hh
pilot / rayyrw / cal_overlap_scores.ccvector1.hh
pilot / rayyrw / cal_overlap_scores.ccfile / FileName.hh
pilot / rayyrw / cal_overlap_scores.ccfile / file_sys_util.hh
pilot / rayyrw / cal_overlap_scores.ccstring_util.hh
pilot / rayyrw / cal_overlap_scores.ccio / izstream.hh
pilot / rayyrw / cal_overlap_scores.ccio / ozstream.hh
pilot / rayyrw / clash_score.hhvector1.hh
pilot / rayyrw / closability_score.hhvector1.hh
pilot / rayyrw / closability_score.hhfile / FileName.hh
pilot / rayyrw / closability_score.hhfile / file_sys_util.hh
pilot / rayyrw / closability_score.hhstring_util.hh
pilot / rayyrw / closability_score.hhpointer / owning_ptr.hh
pilot / rayyrw / fastrelax_replonly.ccexcn / Exceptions.hh
pilot / rayyrw / FragMonteCarlo.hhvector1.hh
pilot / rayyrw / overlap_score.hhvector1.hh
pilot / rayyrw / overlap_score.hhexit.hh
pilot / rayyrw / place_fragments_into_density.ccio / izstream.hh
pilot / rayyrw / place_fragments_into_density.ccio / ozstream.hh
pilot / rayyrw / place_fragments_into_density.ccfile / FileName.hh
pilot / rayyrw / place_fragments_into_density.ccfile / file_sys_util.hh
pilot / rayyrw / replonly.ccexcn / Exceptions.hh
pilot / rayyrw / rms_util.hhvector1.hh
pilot / rayyrw / rms_util.hhstring_util.hh
pilot / rayyrw / score_jd2_replonly.ccexcn / Exceptions.hh
pilot / rayyrw / score_jd2_replonly.ccexit.hh
pilot / rayyrw / util.hhvector1.hh
pilot / rayyrw / util.hhfile / FileName.hh
pilot / rayyrw / util.hhfile / file_sys_util.hh
pilot / rayyrw / util.hhexit.hh
public / recces / recces.ccexcn / Exceptions.hh
public / recon_design / recon.ccexcn / Exceptions.hh
pilot / reggiano / density_res_zscores.ccio / izstream.hh
pilot / reggiano / density_res_zscores.ccio / ozstream.hh
pilot / reggiano / density_res_zscores.ccstring_util.hh
pilot / reggiano / density_res_zscores.ccfile / FileName.hh
pilot / reggiano / density_res_zscores.ccfile / file_sys_util.hh
pilot / reggiano / density_res_zscores.ccexcn / Exceptions.hh
pilot / rhiju / benzene_test.ccvector1.hh
pilot / rhiju / benzene_test.ccio / ozstream.hh
pilot / rhiju / benzene_test.ccio / izstream.hh
pilot / rhiju / block_stack_test.ccvector1.hh
pilot / rhiju / block_stack_test.ccfile / FileName.hh
pilot / rhiju / block_stack_test.ccstream_util.hh
pilot / rhiju / check_cubic_conv.cctools / make_vector1.hh
pilot / rhiju / check_cubic_conv.ccexcn / Exceptions.hh
pilot / rhiju / coarse_rna_test.ccvector1.hh
pilot / rhiju / coarse_rna_test.ccio / ozstream.hh
pilot / rhiju / coarse_rna_test.ccexit.hh
pilot / rhiju / dna_test.ccvector1.hh
pilot / rhiju / easy_target_test.ccvector1.hh
pilot / rhiju / easy_target_test.ccio / ozstream.hh
pilot / rhiju / easy_target_test.ccio / izstream.hh
pilot / rhiju / entropy_test.cctools / make_vector1.hh
pilot / rhiju / entropy_test.ccvector1.hh
pilot / rhiju / entropy_test.ccio / ozstream.hh
pilot / rhiju / gcc185_test.ccvector1.hh
pilot / rhiju / generalize_gaussian_chain_func_test.cctools / make_vector1.hh
pilot / rhiju / get_info.ccio / ozstream.hh
pilot / rhiju / get_info.ccexit.hh
pilot / rhiju / loop_closure_test.ccvector1.hh
pilot / rhiju / loop_closure_test.ccio / ozstream.hh
pilot / rhiju / mg_hires_pdbstats.ccvector1.hh
pilot / rhiju / mg_hires_pdbstats.ccio / ozstream.hh
pilot / rhiju / mg_hires_pdbstats.ccio / izstream.hh
pilot / rhiju / mg_lores_pdbstats.ccvector1.hh
pilot / rhiju / mg_lores_pdbstats.ccio / ozstream.hh
pilot / rhiju / mg_lores_pdbstats.ccio / izstream.hh
pilot / rhiju / morph_pdbs.ccstring_util.hh
pilot / rhiju / morph_pdbs.ccexcn / Exceptions.hh
pilot / rhiju / pack_phosphates.ccvector1.hh
pilot / rhiju / pack_phosphates.ccfile / FileName.hh
pilot / rhiju / pdbstats_rnahelix.ccvector1.hh
pilot / rhiju / pdbstats_rnahelix.cctools / make_vector1.hh
pilot / rhiju / pdbstats_rnahelix.ccio / ozstream.hh
pilot / rhiju / pdbstats_rnahelix.ccio / izstream.hh
pilot / rhiju / pdbstats_test.ccvector1.hh
pilot / rhiju / pdbstats_test.cctools / make_vector1.hh
pilot / rhiju / pdbstats_test.ccio / ozstream.hh
pilot / rhiju / pdbstats_test.ccio / izstream.hh
pilot / rhiju / polar_pdbstats.ccvector1.hh
pilot / rhiju / polar_pdbstats.cctools / make_vector1.hh
pilot / rhiju / polar_pdbstats.ccio / ozstream.hh
pilot / rhiju / polar_pdbstats.ccio / izstream.hh
pilot / rhiju / protein_helix_assemble.ccvector1.hh
pilot / rhiju / rb_entropy.ccvector1.hh
pilot / rhiju / rb_entropy.ccio / ozstream.hh
pilot / rhiju / rb_entropy.ccexcn / Exceptions.hh
pilot / rhiju / read_tensor.ccfile / file_sys_util.hh
pilot / rhiju / read_tensor.cctools / make_vector1.hh
pilot / rhiju / read_tensor.ccexcn / Exceptions.hh
pilot / rhiju / rna_assemble_test.ccvector1.hh
pilot / rhiju / rna_assemble_test.ccio / ozstream.hh
pilot / rhiju / rna_assemble_test.ccio / izstream.hh
pilot / rhiju / rna_assemble_test.ccexit.hh
pilot / rhiju / rna_protein_test.ccvector1.hh
pilot / rhiju / rna_protein_test.ccio / ozstream.hh
pilot / rhiju / rna_test.ccvector1.hh
pilot / rhiju / rna_test.ccio / ozstream.hh
pilot / rhiju / rna_test.ccio / izstream.hh
pilot / rhiju / rna_test.ccfile / file_sys_util.hh
pilot / rhiju / screen_phosphates.ccvector1.hh
pilot / rhiju / screen_phosphates.ccfile / FileName.hh
pilot / rhiju / silly_tag_stuff.ccstring_util.hh
pilot / rhiju / silly_tag_stuff.cctools / make_vector1.hh
pilot / rhiju / silly_tag_stuff.ccvector1.hh
pilot / rhiju / silly_tag_stuff.ccexit.hh
pilot / rhiju / silly_tag_stuff.ccstream_util.hh
pilot / rhiju / stepwise_centroid_test.ccvector1.hh
pilot / rhiju / stepwise_centroid_test.ccio / ozstream.hh
pilot / rhiju / stepwise_helix_test.ccvector1.hh
pilot / rhiju / stepwise_loop_test.ccvector1.hh
pilot / rhiju / stepwise_loop_test.ccio / ozstream.hh
pilot / rhiju / stepwise_lores_test.ccvector1.hh
pilot / rhiju / stepwise_lores_test.ccfile / FileName.hh
pilot / rhiju / stepwise_template_test.ccvector1.hh
pilot / rhiju / stepwise_template_test.ccio / ozstream.hh
pilot / rjha / MetalInterfaceStructureCreator.ccfile / FileName.hh
pilot / rjha / MetalInterfaceStructureCreator.ccvector1.hh
pilot / rjha / NeighborMatch.ccexit.hh
pilot / rjha / SurfaceGroups.ccexit.hh
pilot / rjha / ZincMatchFilter.ccvector1.hh
pilot / rmoretti / atom_tree_check.ccoptions / FileVectorOption.hh
pilot / rmoretti / atom_tree_check.ccgraph / DFS_sort.hh
pilot / rmoretti / bcl_type_check.ccoptions / FileVectorOption.hh
pilot / rmoretti / bootstrap_bcl_types.ccvector1.hh
pilot / rmoretti / bootstrap_bcl_types.ccexcn / Exceptions.hh
pilot / rmoretti / crash_report_test.ccexit.hh
pilot / rmoretti / crash_report_test.cccrash_report.hh
pilot / rmoretti / crash_report_test.ccexcn / Exceptions.hh
pilot / rmoretti / extract_atomtree_diffs_jd1.ccfile / FileName.hh
pilot / rmoretti / extract_atomtree_diffs_jd1.ccpointer / owning_ptr.hh
pilot / rmoretti / extract_atomtree_diffs_jd1.ccvector1.hh
pilot / rmoretti / ligand_dock_jd1.ccexit.hh
pilot / rmoretti / ligand_dock_jd1.ccvector1.hh
pilot / rmoretti / ligand_dock_jd1.ccfile / FileName.hh
pilot / rmoretti / molfile_read_test.ccoptions / FileVectorOption.hh
pilot / rmoretti / restype_kin_output.ccoptions / FileVectorOption.hh
pilot / rmoretti / rosetta_retype_check.ccoptions / FileVectorOption.hh
pilot / rmoretti / rts_check.ccoptions / FileVectorOption.hh
public / rna / rna_denovo.ccjson_utilities.hh
public / rna / rna_denovo.ccexcn / Exceptions.hh
public / rna / rna_design.ccvector1.hh
public / rna / rna_design.ccio / ozstream.hh
public / rna / rna_design.ccexcn / Exceptions.hh
public / rnp_ddg / rnp_ddg.ccpointer / owning_ptr.hh
public / rnp_ddg / rnp_ddg.ccstream_util.hh
pilot / ronj / analyze_ddG.ccfile / FileName.hh
pilot / ronj / analyze_ddG.ccfile / file_sys_util.hh
pilot / ronj / analyze_ddG.ccvector1.functions.hh
pilot / ronj / find_position_matches_using_inverse_rotamers.ccfile / file_sys_util.hh
pilot / ronj / find_position_matches_using_inverse_rotamers.ccfile / FileName.hh
pilot / ronj / find_position_matches_using_inverse_rotamers.ccvector1.hh
pilot / ronj / find_position_matches_using_inverse_rotamers.ccgraph / Graph.hh
pilot / ronj / hydrophobic_patch_stats_calculator.ccfile / file_sys_util.hh
pilot / ronj / hydrophobic_patch_stats_calculator.ccfile / FileName.hh
pilot / ronj / hydrophobic_patch_stats_calculator.ccio / izstream.hh
pilot / ronj / hydrophobic_patch_stats_calculator.ccvector1.hh
pilot / ronj / hydrophobic_patch_stats_calculator.ccexit.hh
pilot / ronj / rss_energy_calculator.ccfile / file_sys_util.hh
pilot / ronj / rss_energy_calculator.ccvector1.hh
pilot / ronj / rss_energy_calculator.ccfile / FileName.hh
pilot / ronj / surfacescore.ccfile / file_sys_util.hh
public / rosetta_scripts / parse_rosetta_script.ccexcn / Exceptions.hh
public / rosetta_scripts / revert_design_to_native.ccvector1.hh
public / rosetta_scripts / revert_design_to_native.ccexcn / Exceptions.hh
public / rosetta_scripts / rosetta_scripts.ccexcn / Exceptions.hh
public / rosetta_scripts / rosetta_scripts_jd3.ccexcn / Exceptions.hh
public / rosetta_scripts / validate_rosetta_script.ccexcn / Exceptions.hh
public / rosettaDNA / rosettaDNA.ccexcn / Exceptions.hh
pilot / rpache / generate_matcher_constraints.ccstring_util.hh
pilot / rpache / score_protein_ligand_interactions.ccvector1.hh
pilot / rpache / score_protein_ligand_interactions.ccstring_util.hh
pilot / rvernon / calc_pair_stats.ccvector1.hh
pilot / rvernon / calc_pair_stats.ccio / izstream.hh
pilot / rvernon / calc_pair_stats.ccio / ozstream.hh
pilot / rvernon / calc_pair_stats.ccfile / FileName.hh
pilot / rvernon / compute_disulfide_matching_score.ccvector1.hh
pilot / rvernon / compute_disulfide_matching_score.ccio / izstream.hh
pilot / rvernon / compute_disulfide_matching_score.ccio / ozstream.hh
pilot / rvernon / compute_disulfide_matching_score.ccfile / FileName.hh
pilot / rvernon / create_disulfide_alldata.ccvector1.hh
pilot / rvernon / create_disulfide_alldata.ccio / izstream.hh
pilot / rvernon / create_disulfide_alldata.ccio / ozstream.hh
pilot / rvernon / create_disulfide_alldata.ccfile / FileName.hh
pilot / rvernon / create_disulfide_angle_statistics.ccvector1.hh
pilot / rvernon / create_disulfide_angle_statistics.ccio / izstream.hh
pilot / rvernon / create_disulfide_angle_statistics.ccio / ozstream.hh
pilot / rvernon / create_disulfide_angle_statistics.ccfile / FileName.hh
pilot / rvernon / create_disulfide_database.ccvector1.hh
pilot / rvernon / create_disulfide_database.ccio / izstream.hh
pilot / rvernon / create_disulfide_database.ccio / ozstream.hh
pilot / rvernon / create_disulfide_database.ccfile / FileName.hh
pilot / rvernon / create_disulfide_distance_statistics.ccvector1.hh
pilot / rvernon / create_disulfide_distance_statistics.ccio / izstream.hh
pilot / rvernon / create_disulfide_distance_statistics.ccio / ozstream.hh
pilot / rvernon / create_disulfide_distance_statistics.ccfile / FileName.hh
pilot / rvernon / create_disulfide_fa_angle_statistics.ccvector1.hh
pilot / rvernon / create_disulfide_fa_angle_statistics.ccio / izstream.hh
pilot / rvernon / create_disulfide_fa_angle_statistics.ccio / ozstream.hh
pilot / rvernon / create_disulfide_fa_angle_statistics.ccfile / FileName.hh
pilot / rvernon / pcs_distances_for_fragpicker.ccvector1.hh
pilot / rvernon / pcs_distances_for_fragpicker.ccio / izstream.hh
pilot / rvernon / pcs_distances_for_fragpicker.ccio / ozstream.hh
pilot / rvernon / pcs_distances_for_fragpicker.ccfile / FileName.hh
pilot / rvernon / pcs_fragments_to_distances.ccvector1.hh
pilot / rvernon / pcs_fragments_to_distances.ccio / izstream.hh
pilot / rvernon / pcs_fragments_to_distances.ccio / ozstream.hh
pilot / rvernon / pcs_fragments_to_distances.ccfile / FileName.hh
pilot / rvernon / pcs_fragments_to_distances2.ccvector1.hh
pilot / rvernon / pcs_fragments_to_distances2.ccio / izstream.hh
pilot / rvernon / pcs_fragments_to_distances2.ccio / ozstream.hh
pilot / rvernon / pcs_fragments_to_distances2.ccfile / FileName.hh
pilot / rvernon / pcs_fragments_to_distances_wRMS.ccvector1.hh
pilot / rvernon / pcs_fragments_to_distances_wRMS.ccio / izstream.hh
pilot / rvernon / pcs_fragments_to_distances_wRMS.ccio / ozstream.hh
pilot / rvernon / pcs_fragments_to_distances_wRMS.ccfile / FileName.hh
pilot / rvernon / pcs_score_individual_residues.ccvector1.hh
pilot / rvernon / pcs_score_individual_residues.ccio / izstream.hh
pilot / rvernon / pcs_score_individual_residues.ccio / ozstream.hh
pilot / rvernon / pcs_score_individual_residues.ccfile / FileName.hh
pilot / rvernon / pcs_score_residues.ccvector1.hh
pilot / rvernon / pcs_score_residues.ccio / izstream.hh
pilot / rvernon / pcs_score_residues.ccio / ozstream.hh
pilot / rvernon / pcs_score_residues.ccfile / FileName.hh
pilot / rvernon / pcs_score_select.ccvector1.hh
pilot / rvernon / pcs_score_select.ccio / izstream.hh
pilot / rvernon / pcs_score_select.ccio / ozstream.hh
pilot / rvernon / pcs_score_select.ccfile / FileName.hh
pilot / rvernon / pcs_score_select_helices.ccvector1.hh
pilot / rvernon / pcs_score_select_helices.ccio / izstream.hh
pilot / rvernon / pcs_score_select_helices.ccio / ozstream.hh
pilot / rvernon / pcs_score_select_helices.ccfile / FileName.hh
pilot / rvernon / print_disulfide_scorefunctions.ccexcn / Exceptions.hh
pilot / rvernon / score_sidechain_sasa.ccvector1.hh
pilot / dgront / saxs / assemble_domains_with_saxs_jd2.ccexcn / Exceptions.hh
pilot / dgront / saxs / assemble_domains_with_saxs_jd2.ccvector1.hh
pilot / dgront / saxs / call_saxs_score.ccfile / FileName.hh
pilot / dgront / saxs / call_saxs_score.ccexcn / Exceptions.hh
pilot / dgront / saxs / ComputeSAXSSpectrum.ccvector1.hh
pilot / dgront / saxs / ComputeSAXSSpectrum.ccexcn / Exceptions.hh
pilot / dgront / saxs / linker_sampler.ccvector1.hh
pilot / dgront / saxs / linker_sampler.ccexcn / Exceptions.hh
pilot / dgront / saxs / RescorePDDF.ccvector1.hh
pilot / dgront / saxs / RescorePDDF.ccexcn / Exceptions.hh
pilot / dgront / saxs / RescoreSAXS.ccexcn / Exceptions.hh
pilot / dgront / saxs / RotateSAXS.ccexcn / Exceptions.hh
public / scenarios / ca_to_allatom.ccvector1.hh
public / scenarios / ca_to_allatom.ccexcn / Exceptions.hh
public / scenarios / doug_dock_design_min_mod2_cal_cal.ccpointer / owning_ptr.hh
public / scenarios / doug_dock_design_min_mod2_cal_cal.ccvector1.hh
public / scenarios / doug_dock_design_min_mod2_cal_cal.ccexcn / Exceptions.hh
public / scenarios / FloppyTail.ccexcn / Exceptions.hh
pilot / scheck / struct_frag.ccio / ozstream.hh
pilot / scheck / struct_frag.ccVirtualBase.hh
pilot / scheck / struct_frag.ccpointer / owning_ptr.hh
benchmark / scientific / ddg_benchmark.ccvector1.hh
benchmark / scientific / ddg_benchmark.ccexcn / Exceptions.hh
benchmark / scientific / design_contrast_and_statistic.ccvector1.hh
benchmark / scientific / design_contrast_and_statistic.ccfile / FileName.hh
benchmark / scientific / design_contrast_and_statistic.ccexcn / Exceptions.hh
benchmark / scientific / rotamer_recovery.ccexcn / Exceptions.hh
benchmark / scientific / rotamer_recovery.ccexit.hh
pilot / ralford / archive / framework_devel / scoring / membrane_rsd_energy_breakdown.ccvector1.hh
pilot / ralford / archive / framework_devel / scoring / mp_scoring_feature_reporter.ccgraph / UpperEdgeGraph.hh
pilot / sergey / cloud_demo.ccexcn / Exceptions.hh
pilot / sergey / ColorsDemo.ccexit.hh
pilot / sergey / ColorsDemo.ccexcn / Exceptions.hh
pilot / sergey / ColorsDemo.cctools / make_vector.hh
pilot / sergey / ColorsDemo.ccCSI_Sequence.hh
pilot / sergey / hal-demo.ccjson_utilities.hh
pilot / sergey / hal-demo.ccexcn / Exceptions.hh
pilot / sergey / hal.ccjson_utilities.hh
pilot / sergey / hal.ccexcn / Exceptions.hh
pilot / sergey / JSON_Demo.ccjson_spirit / json_spirit_reader.h
pilot / sergey / JSON_Demo.ccjson_spirit / json_spirit_writer.h
pilot / sergey / JSON_Demo.cctools / make_vector.hh
pilot / sergey / JSON_Demo.cctools / make_map.hh
pilot / sergey / JSON_Demo.ccexcn / Exceptions.hh
pilot / sergey / OptionsTest.ccpointer / owning_ptr.hh
pilot / sergey / OptionsTest.cctools / make_vector.hh
pilot / sergey / PDBTest.ccstream_util.hh
pilot / sergey / PDBTest.ccvector1.hh
pilot / sergey / PDBTest.ccexcn / Exceptions.hh
pilot / sergey / PyMOLDemo.ccexcn / Exceptions.hh
pilot / sergey / SharedPtrDemo.ccpointer / owning_ptr.hh
pilot / sergey / SharedPtrDemo.ccVirtualBase.hh
pilot / sergey / SharedPtrDemo.ccexcn / Exceptions.hh
pilot / sergey / TracerTest.ccpointer / owning_ptr.hh
pilot / sergey / TracerTest.ccexit.hh
pilot / sevya / find_consensus_mutations.ccio / izstream.hh
pilot / sevya / find_consensus_mutations.ccjson_spirit / json_spirit_reader.h
pilot / sevya / minimization_test.ccio / izstream.hh
pilot / sevya / minimization_test.ccjson_spirit / json_spirit_reader.h
pilot / sevya / minimization_test.ccstring_util.hh
pilot / sevya / msd.ccio / izstream.hh
pilot / sevya / msd.ccjson_spirit / json_spirit_reader.h
pilot / sevya / msd.ccstring_util.hh
pilot / sevya / msd_jd2.ccexcn / Exceptions.hh
pilot / sevya / recon_mpi.ccmpi_util.hh
pilot / sevya / recon_mpi.ccstring_util.hh
public / sewing / edge_file_generator.ccexcn / Exceptions.hh
public / sewing / segment_file_generator.ccstring_util.hh
public / sewing / segment_file_generator.ccexit.hh
public / sewing / segment_file_generator.ccio / ozstream.hh
public / sewing / segment_file_generator.ccio / izstream.hh
public / sewing / segment_file_generator.ccstream_util.hh
public / sewing / segment_file_generator.fwd.hhpointer / owning_ptr.hh
public / sewing / segment_file_generator.hhVirtualBase.hh
public / sewing / segment_file_generator.hhvector1.hh
pilot / shilei / bb_cluster.ccvector1.hh
pilot / shilei / cluster_hotspot_docking.ccexit.hh
pilot / shilei / cluster_hotspot_docking.ccvector1.hh
pilot / shilei / cluster_hotspot_docking.cctools / make_vector1.hh
pilot / shilei / complex_interface_optimize.ccexcn / Exceptions.hh
pilot / shilei / complex_interface_optimize.ccio / izstream.hh
pilot / shilei / complex_interface_optimize.ccio / ozstream.hh
pilot / shilei / complex_interface_optimize.ccvector1.hh
pilot / shilei / compute_Irmsd.ccexcn / Exceptions.hh
pilot / shilei / compute_Irmsd.ccstream_util.hh
pilot / shilei / compute_Irmsd.cctools / make_vector1.hh
pilot / shilei / compute_Irmsd.ccvector1.hh
pilot / shilei / docking_inputpatchdock_mpi.ccvector1.hh
pilot / shilei / docking_inputpatchdock_mpi.ccio / ozstream.hh
pilot / shilei / docking_inputpatchdock_mpi.ccio / izstream.hh
pilot / shilei / docking_inputpatchdock_mpi.cctools / make_vector1.hh
pilot / shilei / docking_inputpatchdock_mpi.ccmpi_util.hh
pilot / shilei / docking_parallel.ccvector1.hh
pilot / shilei / docking_parallel.ccio / ozstream.hh
pilot / shilei / docking_parallel.cctools / make_vector1.hh
pilot / shilei / docking_parallel.ccmpi_util.hh
pilot / shilei / generate_hbond_geometry.ccexcn / Exceptions.hh
pilot / shilei / generate_hbond_geometry.ccio / izstream.hh
pilot / shilei / generate_hbond_geometry.ccio / ozstream.hh
pilot / shilei / generate_hbond_geometry.ccvector1.hh
pilot / shilei / lowresdock_patchdock_hotspot_cst.ccvector1.hh
pilot / shilei / lowresdock_patchdock_hotspot_cst.cctools / make_vector1.hh
pilot / shilei / match_disulfide_to_scaffold.ccio / izstream.hh
pilot / shilei / match_disulfide_to_scaffold.ccio / ozstream.hh
pilot / shilei / read_pose_jump_orientation_repack.ccvector1.hh
pilot / shilei / read_pose_jump_orientation_repack.cctools / make_vector1.hh
pilot / shilei / score_hotspot_cst.ccvector1.hh
pilot / shilei / tmalign_cluster.ccvector1.hh
pilot / shirst / LoophashFilter.ccexcn / Exceptions.hh
pilot / shirst / LoophashFilter.ccvector1.hh
pilot / shirst / LoophashFilter.ccvector0.hh
pilot / shirst / TestTopologySampler.ccexcn / Exceptions.hh
pilot / shirst / TestTopologySampler.ccvector0.hh
pilot / shirst / TestTopologySampler.ccvector1.hh
pilot / shirst / TestTopologySampler.ccstring_util.hh
pilot / smlewis / Extender.ccio / izstream.hh
pilot / smlewis / FloppyTail_loop.ccexit.hh
pilot / smlewis / FloppyTail_loop.ccvector0.hh
pilot / smlewis / FloppyTail_loop.ccvector1.hh
pilot / smlewis / UBQ_UBQ_E2.ccvector1.hh
pilot / smlewis / UBQ_UBQ_E2.ccexit.hh
pilot / ssrb19 / adding_peptoids.ccvector1.hh
public / stepwise / build_full_model.ccvector1.hh
public / stepwise / build_full_model.ccexcn / Exceptions.hh
public / stepwise / build_full_model.ccstream_util.hh
public / stepwise / resample_full_model.ccvector1.hh
public / stepwise / resample_full_model.ccexcn / Exceptions.hh
public / stepwise / stepwise.ccjson_utilities.hh
public / stepwise / stepwise.ccvector1.hh
public / stepwise / stepwise.ccfile / FileName.hh
pilot / sthyme / dna_motifs_collector.ccio / ozstream.hh
pilot / sthyme / dna_motifs_collector.ccstring_util.hh
pilot / sthyme / dna_motifs_collector.ccvector1.hh
pilot / sthyme / ligand_motifs.ccgraph / Graph.hh
pilot / sthyme / ligand_motifs.ccvector1.hh
pilot / sthyme / ligand_motifs.ccexit.hh
pilot / sthyme / ligand_motifs.ccpointer / owning_ptr.hh
pilot / sthyme / ligand_motifs.ccVirtualBase.hh
pilot / sthyme / motif_dna_packer_design.ccvector1.hh
pilot / sthyme / motif_dna_packer_design.ccstring_util.hh
pilot / sthyme / pdb2motiffile.ccio / ozstream.hh
pilot / stranges / buried_polar_finder.ccfile / FileName.hh
pilot / stranges / InterfaceMutMaker.ccio / izstream.hh
pilot / stranges / InterfaceMutMaker.ccfile / FileName.hh
pilot / stranges / InterfaceMutMaker.ccfile / file_sys_util.hh
pilot / stranges / min_pack_min.ccvector1.hh
pilot / stranges / peptide_minimizer.ccfile / FileName.hh
pilot / stranges / simple_interfaceanalyzer.ccfile / FileName.hh
pilot / stranges / simple_interfaceanalyzer.ccio / ozstream.hh
pilot / stranges / simple_interfaceanalyzer.ccfile / file_sys_util.hh
pilot / stranges / xml_task_printer.ccfile / FileName.hh
pilot / stranges / xml_task_printer.ccio / ozstream.hh
pilot / stranges / xml_task_printer.ccfile / file_sys_util.hh
public / surface_docking / surface_docking.ccexcn / Exceptions.hh
pilot / jadolfbr / testing / class_tests.ccexcn / Exceptions.hh
pilot / jadolfbr / testing / class_tests.ccvector1.hh
pilot / jadolfbr / testing / class_tests.ccsql_database / DatabaseSessionManager.hh
pilot / jadolfbr / testing / class_tests.ccsql_database / types.hh
pilot / jadolfbr / testing / class_tests.ccfile / file_sys_util.hh
pilot / jadolfbr / testing / test_grafting.ccstring_util.hh
tests / test_C-terminal_conjugation.ccexcn / Exceptions.hh
tests / test_carbohydrate_docking.ccexcn / Exceptions.hh
tests / test_carbohydrate_scoring.ccexcn / Exceptions.hh
tests / test_CarbohydrateInfo.ccpointer / owning_ptr.hh
tests / test_CarbohydrateInfo.ccexcn / Exceptions.hh
tests / test_CarbohydrateInfo.ccfile / FileName.hh
tests / test_CCD_loop_closure.ccexcn / Exceptions.hh
tests / test_coenzymes.ccexcn / Exceptions.hh
tests / test_coenzymes.ccfile / FileName.hh
tests / test_EnergyMethodOptions.ccexcn / Exceptions.hh
tests / test_explicit_membrane_input.ccexcn / Exceptions.hh
tests / test_non-canonical_connectivities.ccexcn / Exceptions.hh
tests / test_RingConformationMover.ccexcn / Exceptions.hh
tests / test_SiteConstraint.ccexcn / Exceptions.hh
pilot / thermo / metropolis_hastings.ccexcn / Exceptions.hh
public / rna / thread / rna_thread.ccstring_util.hh
public / rna / thread / rna_thread.ccvector1.hh
public / rna / thread / rna_thread.ccio / ozstream.hh
public / rna / thread / rna_thread.ccexcn / Exceptions.hh
public / rna / thread / rna_thread_and_minimize.ccvector1.hh
public / rna / thread / rna_thread_and_minimize.ccexcn / Exceptions.hh
pilot / tjacobs / BundleDumper.ccsql_database / DatabaseSessionManager.hh
pilot / tjacobs / BundleDumper.ccstring_util.hh
pilot / tjacobs / BundleDumper.ccio / izstream.hh
pilot / tjacobs / BundlePairRmsdCalculator.ccsql_database / DatabaseSessionManager.hh
pilot / tjacobs / BundlePairRmsdCalculator.ccstring_util.hh
pilot / tjacobs / BundlePairRmsdCalculatorGPU.ccmpi_util.hh
pilot / tjacobs / BundlePairRmsdCalculatorGPU.ccsql_database / DatabaseSessionManager.hh
pilot / tjacobs / BundlePairRmsdCalculatorGPU.ccstring_util.hh
pilot / tjacobs / CompareBundleToNative.ccsql_database / DatabaseSessionManager.hh
pilot / tjacobs / CompareBundleToNative.ccstring_util.hh
pilot / tjacobs / FoldTreeOutputter.ccexcn / Exceptions.hh
pilot / tjacobs / FragmentDumper.ccvector1.hh
pilot / tjacobs / FragmentDumper.ccexit.hh
pilot / tjacobs / FragmentDumper.ccfile / FileName.hh
pilot / tjacobs / HelicalAssembly.ccstring_util.hh
pilot / tjacobs / HelicalAssembly.ccvector1.hh
pilot / tjacobs / HelicalAssembly.ccsql_database / DatabaseSessionManager.hh
pilot / tjacobs / HelixAssemblyDesigner.ccio / izstream.hh
pilot / tjacobs / HelixAssemblyDesigner.ccexit.hh
pilot / tjacobs / InterfaceStrandFinderMover.ccexit.hh
pilot / tjacobs / InterfaceStrandFinderMover.ccexcn / Exceptions.hh
pilot / tjacobs / InterfaceStrandFinderMover.ccvector1.functions.hh
pilot / tjacobs / InterfaceStrandFinderMover.ccvector1.hh
pilot / tjacobs / InterfaceStrandFinderMover.ccio / izstream.hh
pilot / tjacobs / model_dumper.ccvector1.hh
pilot / tjacobs / model_dumper.ccstring_util.hh
pilot / tjacobs / ModelTrimmer.ccio / izstream.hh
pilot / tjacobs / ModelTrimmer.ccstring_util.hh
pilot / tjacobs / ModelTrimmer.ccvector1.hh
pilot / tjacobs / ModelTrimmer.ccfile / FileName.hh
pilot / tjacobs / MotifFinder.ccio / ozstream.hh
pilot / tjacobs / MotifFinder.ccio / izstream.hh
pilot / tjacobs / MotifFinder.ccmpi_util.hh
pilot / tjacobs / MotifFinder.ccstring_util.hh
pilot / tjacobs / MotifFinder.ccvector1.hh
pilot / tjacobs / MotifFinder.ccsql_database / DatabaseSessionManager.hh
pilot / tjacobs / MotifFinder.ccfile / FileName.hh
pilot / tjacobs / mpi_helixAssembly.ccstring_util.hh
pilot / tjacobs / mpi_helixAssembly.ccvector1.hh
pilot / tjacobs / mpi_helixAssembly.ccio / ozstream.hh
pilot / tjacobs / mpi_helixAssembly.ccio / izstream.hh
pilot / tjacobs / mpi_helixAssembly.ccvector1.functions.hh
pilot / tjacobs / NodePairRmsdCalculator.ccsql_database / DatabaseSessionManager.hh
pilot / tjacobs / PrepareGraphNodes.ccsql_database / DatabaseSessionManager.hh
pilot / tjacobs / PrepareGraphNodes.ccstring_util.hh
pilot / tjacobs / SewAppend.ccio / izstream.hh
pilot / tjacobs / SewAppend.ccmpi_util.hh
pilot / tjacobs / SewAppend.ccstring_util.hh
pilot / tjacobs / SewAppend.ccvector1.hh
pilot / tjacobs / SewAppend.ccsql_database / DatabaseSessionManager.hh
pilot / tjacobs / SewingAssembler.ccio / izstream.hh
pilot / tjacobs / SewingAssembler.ccmpi_util.hh
pilot / tjacobs / SewingAssembler.ccstring_util.hh
pilot / tjacobs / SewingAssembler.ccvector1.hh
pilot / tjacobs / SewingAssembler.ccsql_database / DatabaseSessionManager.hh
pilot / tjacobs / SmotifHasher.ccsql_database / DatabaseSessionManager.hh
pilot / tjacobs / SmotifHasher.ccstring_util.hh
pilot / tjacobs / SmotifHasher.ccio / izstream.hh
pilot / tjacobs / SmotifHasher.ccvector1.hh
pilot / tjacobs / SmotifPairRmsdCalculatorGPU.CCsql_database / DatabaseSessionManager.hh
pilot / tjacobs / SmotifPairRmsdCalculatorGPU.CCstring_util.hh
pilot / tjacobs / TestLoophash.ccexcn / Exceptions.hh
pilot / tjacobs / TestLoophash.ccvector1.hh
pilot / tjacobs / TestLoophash.ccio / ozstream.hh
public / trRosetta / trRosetta.ccexcn / Exceptions.hh
pilot / tseng / tseng_minimize.ccfile / FileName.hh
pilot / tseng / tseng_minimize.ccexcn / Exceptions.hh
pilot / tseng / tseng_minimize.ccio / izstream.hh
pilot / tseng / tseng_minimize.ccio / ozstream.hh
public / rna / util / analyze_base_pairing.ccexcn / Exceptions.hh
public / rna / util / cs_rosetta_rna.ccexcn / Exceptions.hh
public / rna / util / cs_rosetta_rna.ccvector1.hh
public / rna / util / nucleobase_sample_around.ccio / ozstream.hh
public / rna / util / nucleobase_sample_around.ccexcn / Exceptions.hh
public / rna / util / rna_cluster.ccvector1.hh
public / rna / util / rna_cluster.ccexcn / Exceptions.hh
public / rna / util / rna_database.ccvector1.hh
public / rna / util / rna_database.cctools / make_vector1.hh
public / rna / util / rna_database.ccio / ozstream.hh
public / rna / util / rna_database.ccfile / file_sys_util.hh
public / rna / util / rna_database.ccexcn / Exceptions.hh
public / rna / util / rna_extract.ccvector1.hh
public / rna / util / rna_extract.ccexcn / Exceptions.hh
public / rna / util / rna_features.ccvector1.hh
public / rna / util / rna_features.cctools / make_vector1.hh
public / rna / util / rna_features.ccio / izstream.hh
public / rna / util / rna_features.ccfile / FileName.hh
public / rna / util / rna_graft.ccvector1.hh
public / rna / util / rna_helix.ccvector1.hh
public / rna / util / rna_helix.ccexit.hh
public / rna / util / rna_helix.ccexcn / Exceptions.hh
public / rna / util / rna_idealize.ccexcn / Exceptions.hh
public / rna / util / rna_minimize.ccvector1.hh
public / rna / util / rna_minimize.ccexcn / Exceptions.hh
public / rna / util / rna_motif.ccio / ozstream.hh
public / rna / util / rna_predict_chem_map.ccvector1.hh
public / rna / util / rna_predict_chem_map.cctools / make_vector1.hh
public / rna / util / rna_predict_chem_map.ccio / ozstream.hh
public / rna / util / rna_score.ccvector1.hh
public / rna / util / rna_score.ccexcn / Exceptions.hh
public / rna / util / rna_suitename.ccexcn / Exceptions.hh
pilot / jackmaguire / vlmmlr_packer / FixbbSimAnnealer.ccexit.hh
pilot / jackmaguire / vlmmlr_packer / FixbbSimAnnealer.ccvector0.hh
pilot / jackmaguire / vlmmlr_packer / FixbbSimAnnealer.ccvector1.hh
pilot / jackmaguire / vlmmlr_packer / FixbbSimAnnealer.fwd.hhpointer / owning_ptr.hh
pilot / jackmaguire / vlmmlr_packer / FixbbSimAnnealer.hhvector0.hh
pilot / vmullig / bettercluster.ccvector1.hh
pilot / vmullig / cycpep_analysis.ccexcn / Exceptions.hh
pilot / vmullig / design_truecycpeptide_fromstub.ccvector1.hh
pilot / vmullig / fit_helixparams.ccexit.hh
pilot / vmullig / fit_helixparams.ccexcn / Exceptions.hh
pilot / vmullig / fit_helixparams.ccvector1.hh
pilot / vmullig / make_betahelicalbundle.ccvector1.hh
pilot / vmullig / make_helicalbundle.ccvector1.hh
pilot / vmullig / make_ideal_betapeptide.ccvector1.hh
pilot / vmullig / make_mainchain_potential.ccexcn / Exceptions.hh
pilot / vmullig / make_mainchain_potential.ccpointer / memory.hh
pilot / vmullig / make_truecyclicpeptide.ccio / izstream.hh
pilot / vmullig / make_truecyclicpeptide.ccio / ozstream.hh
pilot / vmullig / PCA_internal_test.ccvector1.hh
pilot / vmullig / PCA_visualizer.ccvector1.hh
pilot / vmullig / plot_scoreterm.ccexcn / Exceptions.hh
pilot / vmullig / symmetrize_3d_ramamap.ccexit.hh
pilot / vmullig / symmetrize_3d_ramamap.ccexcn / Exceptions.hh
pilot / vmullig / symmetrize_3d_ramamap.ccio / izstream.hh
pilot / vmullig / symmetrize_3d_ramamap.ccio / ozstream.hh
pilot / vmullig / symmetrize_3d_ramamap.ccvector1.hh
pilot / vmullig / symmetrize_new_ramamap.ccexit.hh
pilot / vmullig / symmetrize_new_ramamap.ccexcn / Exceptions.hh
pilot / vmullig / symmetrize_new_ramamap.ccio / izstream.hh
pilot / vmullig / symmetrize_new_ramamap.ccio / ozstream.hh
pilot / vmullig / symmetrize_new_ramamap.ccvector1.hh
pilot / vmullig / symmetrize_old_ramamap.ccexit.hh
pilot / vmullig / symmetrize_old_ramamap.ccexcn / Exceptions.hh
pilot / vmullig / symmetrize_old_ramamap.ccio / izstream.hh
pilot / vmullig / symmetrize_old_ramamap.ccio / ozstream.hh
pilot / vmullig / symmetrize_rotlib.ccexcn / Exceptions.hh
pilot / vmullig / symmetrize_rotlib.ccoptions / OptionCollection.hh
pilot / vmullig / tensorflow_test1.ccexcn / Exceptions.hh
pilot / vmullig / test_cyclic_rama.ccio / izstream.hh
pilot / vmullig / test_cyclic_rama.ccio / ozstream.hh
pilot / vmullig / test_D_scoring.ccio / izstream.hh
pilot / vmullig / test_D_scoring.ccio / ozstream.hh
pilot / vmullig / test_KIC_betapeptide.ccvector1.hh
pilot / vmullig / test_makebundle_mover.ccexit.hh
pilot / vmullig / test_makebundle_mover.ccexcn / Exceptions.hh
pilot / vmullig / test_makebundle_mover.ccvector1.hh
pilot / vmullig / test_makebundlehelix_mover.ccexit.hh
pilot / vmullig / test_makebundlehelix_mover.ccexcn / Exceptions.hh
pilot / vmullig / test_makebundlehelix_mover.ccvector1.hh
pilot / vmullig / test_metalloproteins.ccio / izstream.hh
pilot / vmullig / test_metalloproteins.ccio / ozstream.hh
pilot / vmullig / test_multithreaded_ig_correctness.ccexcn / Exceptions.hh
pilot / vmullig / test_multithreaded_packing_performance.ccexcn / Exceptions.hh
pilot / vmullig / test_multithreaded_pdb_load.ccexcn / Exceptions.hh
pilot / vmullig / test_multithreaded_pdb_load.ccoptions / OptionCollection.hh
pilot / vmullig / test_multithreaded_ramapp_load.ccexcn / Exceptions.hh
pilot / vmullig / test_multithreaded_ramapp_load.ccoptions / OptionCollection.hh
pilot / vmullig / test_rosetta_thread_manager_advanced_API.ccexcn / Exceptions.hh
pilot / vmullig / test_rosetta_thread_manager_basic_API.ccexcn / Exceptions.hh
pilot / vmullig / test_sidechainKIC.ccio / izstream.hh
pilot / vmullig / test_sidechainKIC.ccio / ozstream.hh
pilot / vmullig / test_tensorflow_graph_convolutional_nn.ccexcn / Exceptions.hh
pilot / vmullig / test_trRosetta.ccexcn / Exceptions.hh
pilot / vmullig / test_trRosettaConstraintGenerator.ccexcn / Exceptions.hh
pilot / vmullig / test_trRosettaProtocolMover.ccexcn / Exceptions.hh
public / weight_optimization / optE_parallel.ccexcn / Exceptions.hh
public / weight_optimization / torsional_potential_corrections.ccvector1.hh
public / weight_optimization / torsional_potential_corrections.ccio / izstream.hh
public / weight_optimization / torsional_potential_corrections.ccio / ozstream.hh
public / weight_optimization / torsional_potential_corrections.ccstring_util.hh
public / weight_optimization / torsional_potential_corrections.ccfile / FileName.hh
public / weight_optimization / torsional_potential_corrections.ccexcn / Exceptions.hh
pilot / wendao / calc_stress_tensor.ccexcn / Exceptions.hh
pilot / wendao / cenrot_bbsc_demo.ccvector1.hh
pilot / wendao / cenrot_bbsc_demo.ccfixedsizearray1.hh
pilot / wendao / cenrot_jd2.ccvector1.hh
pilot / wendao / cenrot_jd2.cctools / make_vector1.hh
pilot / wendao / cyclic_sampler.ccvector1.hh
pilot / wendao / cyclic_sampler.ccfixedsizearray1.hh
pilot / wendao / decoys_frag_quality.ccexcn / Exceptions.hh
pilot / wendao / decoys_frag_quality.ccio / ozstream.hh
pilot / wendao / decoys_frag_quality.ccvector1.hh
pilot / wendao / decoys_frag_quality.ccfile / FileName.hh
pilot / wendao / fa_to_cenrot_score.ccvector1.hh
pilot / wendao / fa_to_cenrot_score.ccfixedsizearray1.hh
pilot / wendao / gen_cav_ball.ccstring_util.hh
pilot / wendao / gen_cav_ball.ccfile / FileName.hh
pilot / wendao / gen_cav_ball.ccfile / file_sys_util.hh
pilot / wendao / gen_cav_ball.ccexit.hh
pilot / wendao / gen_cav_ball.ccio / izstream.hh
pilot / wendao / gen_cav_ball.ccio / ozstream.hh
pilot / wendao / gen_cav_ball.ccgraph / Graph.hh
pilot / wendao / general_pair_counting.ccvector1.hh
pilot / wendao / general_pair_counting.ccfixedsizearray1.hh
pilot / wendao / pairwise_fa_energy.ccexcn / Exceptions.hh
pilot / wendao / params_opt.ccgraph / Graph.hh
pilot / wendao / params_opt.ccvector1.hh
pilot / wendao / test_bbmc.ccio / ozstream.hh
pilot / wendao / test_bbmc.ccvector1.hh
pilot / wendao / test_bbmc.ccfile / file_sys_util.hh
pilot / wendao / test_bbmc.ccfile / FileName.hh
pilot / wendao / test_bbmc.ccexit.hh
pilot / wendao / test_bbmc.ccio / mpistream.hh
pilot / wendao / test_cen_rot.ccvector1.hh
pilot / wendao / test_cen_rot.ccfixedsizearray1.hh
pilot / wendao / test_cluster.ccexit.hh
pilot / whitney / whitney_identify_epitope.ccvector1.hh
pilot / whitney / whitney_identify_epitope.ccio / ozstream.hh
pilot / whitney / whitney_local_backrub.ccvector1.hh
pilot / whitney / whitney_local_backrub.ccio / ozstream.hh
pilot / whitney / whitney_prepare_native.ccexcn / Exceptions.hh
pilot / whitney / whitney_rebuild_ankyrin.ccio / ozstream.hh
pilot / whitney / whitney_repack_input.ccvector1.hh
pilot / whitney / whitney_repack_input.ccio / ozstream.hh
pilot / whitney / whitney_specificity_switch.ccvector1.hh
pilot / whitney / whitney_specificity_switch.ccio / ozstream.hh
pilot / will / holes.ccstring_util.hh
pilot / will / holes.ccvector1.hh
pilot / will / holes_daball_input.ccio / izstream.hh
pilot / will / holes_daball_input.ccvector1.hh
pilot / will / sym_multicomp_test.ccvector1.hh
pilot / will / test_surf_vol.ccio / izstream.hh
pilot / will / test_surf_vol.ccio / ozstream.hh
pilot / will / test_surf_vol.ccvector1.hh
pilot / woodsh / mp_optimize_geometry_params.ccvector1.hh
pilot / woodsh / mp_optimize_geometry_params.ccpointer / owning_ptr.hh
pilot / woodsh / mp_optimize_geometry_params.ccio / ozstream.hh
pilot / woodsh / mp_transition_bfactor.ccvector1.hh
pilot / woodsh / mp_transition_bfactor.ccpointer / owning_ptr.hh
pilot / woodsh / set_radius.ccvector1.hh
pilot / woodsh / set_radius.ccpointer / owning_ptr.hh
pilot / wujsean / graft_ligand.ccvector1.hh
pilot / wujsean / graft_ligand.ccexcn / Exceptions.hh
pilot / xingjiepan / dna_motif_matcher.ccvector1.hh
pilot / xingjiepan / dna_motif_matcher.ccstring_util.hh
pilot / xingjiepan / dna_motif_matcher.ccvector0.hh
pilot / yab / buns_report.ccvector1.hh
pilot / yab / buns_report.ccexcn / Exceptions.hh
pilot / yab / ufv.ccfile / FileName.hh
pilot / yab / ufv.ccio / izstream.hh
pilot / yab / ufv.ccoptions / keys / OptionKey.hh
pilot / yab / ufv.ccexcn / Exceptions.hh
pilot / yab / vllb.ccexcn / Exceptions.hh
pilot / yfsong / AlignChunkMover.fwd.hhpointer / owning_ptr.hh
pilot / yfsong / challenge.ccexcn / Exceptions.hh
pilot / yfsong / PB_potential.ccio / izstream.hh
pilot / yfsong / PB_potential.ccexcn / Exceptions.hh
pilot / yfsong / plot_hb.ccexcn / Exceptions.hh
pilot / yfsong / util.hhpointer / access_ptr.hh
pilot / yiliu / AbinitioClassic.ccio / izstream.hh
pilot / yiliu / AbinitioClassic.ccvector1.hh
pilot / yiliu / AbinitioClassic.ccio / util.hh
pilot / yiliu / AbinitioClassic.ccexcn / Exceptions.hh
pilot / yiliu / AbinitioClassic.ccexit.hh
pilot / yiliu / AbinitioClassic.ccstring_util.hh
pilot / yiliu / combine_silent_test.ccvector1.hh
pilot / yiliu / combine_silent_test.ccexcn / Exceptions.hh
pilot / yiliu / design_contrast_and_statistic.ccstream_util.hh
pilot / yiliu / design_contrast_and_statistic.ccexcn / Exceptions.hh
pilot / yiliu / design_contrast_and_statistic.ccvector1.hh
pilot / yiliu / design_contrast_and_statistic.ccfile / FileName.hh
pilot / yiliu / design_contrast_and_statistic.ccio / izstream.hh
pilot / yiliu / design_contrast_test.ccexcn / Exceptions.hh
pilot / yiliu / design_contrast_test.ccvector1.hh
pilot / yiliu / design_contrast_test.ccfile / FileName.hh
pilot / yiliu / extract_pdbs_test.ccvector1.hh
pilot / yiliu / extract_pdbs_test.ccexcn / Exceptions.hh
pilot / ysrinivasan / mucintypeglycosylation.ccexcn / Exceptions.hh
pilot / zhezhang / extract_CA_coords.ccio / ozstream.hh
pilot / zhezhang / extract_CA_coords.ccvector1.hh
pilot / zhezhang / extract_CA_coords.ccexcn / Exceptions.hh
pilot / zhezhang / extract_replica.ccio / ozstream.hh
pilot / zhezhang / extract_replica.ccvector1.hh
pilot / zhezhang / extract_replica.ccexit.hh
pilot / zhezhang / extract_replica.ccexcn / Exceptions.hh
pilot / zhezhang / fasta2pdb.ccio / ozstream.hh
pilot / zhezhang / fasta2pdb.ccvector1.hh
pilot / zhezhang / fasta2pdb.ccexit.hh
pilot / zhezhang / fasta2pdb.ccexcn / Exceptions.hh
pilot / zhezhang / r_rmsf.ccio / ozstream.hh
pilot / zhezhang / r_rmsf.ccvector1.hh
pilot / zhezhang / r_rmsf.ccexit.hh
pilot / zhezhang / r_rmsf.ccexcn / Exceptions.hh
pilot / zibochen / pad_helices.ccstring_util.hh
pilot / zibochen / pad_helices.ccvector1.hh
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