Rosetta
src
apps
pilot
pilot → numeric Relation
File in src/apps/pilot
Includes file in src/numeric
awatkins
/
a3b_hbs_creator.cc
random
/
random.hh
awatkins
/
a3b_test.cc
random
/
random.hh
grant
/
AbInitio_MPI.cc
random
/
random.hh
eva
/
adapt_rotamers.cc
random
/
random.hh
eva
/
adapt_rotamers.cc
xyzVector.hh
rhiju
/
legacy
/
add_delete_monte_carlo.cc
conversions.hh
rhiju
/
legacy
/
add_delete_monte_carlo.cc
random
/
random.hh
rhiju
/
legacy
/
add_delete_monte_carlo.cc
xyzVector.hh
james
/
add_ligand.cc
random
/
random.hh
james
/
add_ligand.cc
random
/
random_permutation.hh
fcchou
/
adenosine_stack_test.cc
conversions.hh
fcchou
/
adenosine_stack_test.cc
xyzVector.hh
awatkins
/
aggregate_coarse_rna_vdw.cc
MathNTensor.hh
awatkins
/
aggregate_coarse_rna_vdw.cc
MathNTensor_io.hh
guangfeng
/
align_substructure.cc
model_quality
/
rms.hh
guangfeng
/
align_substructure.cc
xyzMatrix.hh
guangfeng
/
align_substructure.cc
xyzVector.hh
mike
/
alignanalyse.cc
random
/
random.hh
mike
/
alignanalyse.cc
xyzVector.hh
dgront
/
experiments
/
AllCrmsd.cc
model_quality
/
rms.hh
james
/
angles.cc
xyzVector.hh
james
/
anneal_align.cc
random
/
random.hh
jadolfbr
/
AntibodyInfoRMLoader.cc
xyzVector.hh
brunette
/
armEval.cc
conversions.hh
brunette
/
armEval.cc
trig.functions.hh
brunette
/
armEval.cc
xyz.functions.hh
brunette
/
armEval.cc
xyzVector.hh
will
/
old
/
atom_design.cc
random
/
random.hh
will
/
old
/
atom_design.cc
xyz.functions.hh
will
/
old
/
atom_design.cc
xyz.io.hh
kale
/
examples
/
atom_id_demo.cc
constants.hh
kale
/
examples
/
atom_id_demo.cc
numeric.functions.hh
kale
/
examples
/
atom_id_demo.cc
xyzVector.hh
kale
/
detailed_balance
/
backbone_tests.cc
random
/
random.hh
colin
/
backrub_pilot.cc
random
/
random.hh
barak
/
barak.score.cc
random
/
random.hh
jackmaguire
/
benchmark_k_medoids.cc
random
/
random.hh
doug
/
betacat_movie.cc
random
/
random.hh
kale
/
examples
/
boost_matrix.cc
types.hh
will
/
old
/
bpy.cc
random
/
random.hh
will
/
old
/
bpy.cc
model_quality
/
rms.hh
will
/
old
/
bpy.cc
xyz.functions.hh
will
/
old
/
bpy.cc
xyz.io.hh
kale
/
examples
/
broken_original_kick.cc
random
/
random.hh
kale
/
examples
/
broken_original_kick.cc
kinematic_closure
/
types.hh
barak
/
BuildFloppyTail.cc
random
/
random.hh
barak
/
BuildFloppyTail.cc
xyzVector.hh
james
/
burial.cc
random
/
random.hh
james
/
burial.cc
xyzVector.hh
maprahamian
/
burial_measure_sphere.cc
NumericTraits.hh
kevin
/
BuriedUnsatPolarsFinder2.cc
conversions.hh
kevin
/
BuriedUnsatPolarsFinder2.cc
xyzVector.hh
kevin
/
BuriedUnsatPolarsFinder3.cc
conversions.hh
kevin
/
BuriedUnsatPolarsFinder3.cc
xyzVector.hh
chrisk
/
byres_data.cc
xyzMatrix.hh
chrisk
/
byres_data.cc
xyzVector.hh
james
/
ca_build.cc
random
/
random.hh
neil
/
calc_ddG.cc
random
/
random.hh
frank
/
calc_ssm_energies.cc
xyz.functions.hh
frank
/
calc_ssm_energies.cc
xyzVector.hh
brunette
/
calc_ssm_energies_with_structure_profile.cc
xyz.functions.hh
brunette
/
calc_ssm_energies_with_structure_profile.cc
xyzVector.hh
kkappel
/
calculate_distances.cc
xyzMatrix.hh
dgront
/
experiments
/
call_mover.cc
random
/
random.hh
phil
/
capri15.cc
random
/
random.hh
phil
/
capri15.cc
random
/
random_permutation.hh
phil
/
capri15.cc
xyz.functions.hh
phil
/
capri15.cc
xyzMatrix.hh
phil
/
capri15.cc
xyzVector.hh
phil
/
capri15_scoring.hh
random
/
random.hh
phil
/
capri15_scoring.hh
random
/
random_permutation.hh
phil
/
capri15_scoring.hh
xyz.functions.hh
phil
/
capri15_scoring.hh
xyzMatrix.hh
phil
/
capri15_scoring.hh
xyzVector.hh
frank
/
cart_refine.cc
random
/
random.hh
frank
/
cart_refine.cc
xyzVector.hh
james
/
casp9_superdev.cc
xyzVector.hh
neil
/
char_native.cc
random
/
random.hh
ralford
/
archive
/
check_rotation.cc
random
/
random.hh
ralford
/
archive
/
check_rotation.cc
xyz.functions.hh
ralford
/
archive
/
check_rotation.cc
xyzVector.hh
liz
/
close_homolog_refinement.cc
random
/
random.hh
liz
/
close_homolog_refinement.cc
xyzVector.hh
bazzoli
/
cnl_env_lost_hbs.cc
xyzVector.hh
will
/
old
/
coiled_coil.cc
random
/
random.hh
will
/
old
/
coiled_coil.cc
model_quality
/
rms.hh
will
/
old
/
coiled_coil.cc
xyz.functions.hh
will
/
old
/
coiled_coil.cc
xyz.io.hh
neil
/
coiled_coil_search.cc
random
/
random.hh
neil
/
coiled_coil_search.cc
xyz.functions.hh
neil
/
coiled_coil_search.cc
xyz.io.hh
will
/
old
/
coiled_coil_zn.cc
random
/
random.hh
will
/
old
/
coiled_coil_zn.cc
model_quality
/
rms.hh
will
/
old
/
coiled_coil_zn.cc
xyz.functions.hh
will
/
old
/
coiled_coil_zn.cc
xyz.io.hh
barak
/
compare_rms_byres.cc
constants.hh
barak
/
compare_rms_byres.cc
random
/
random.hh
barak
/
compare_structures.cc
random
/
random.hh
frankdt
/
concatenate_poses.cc
HomogeneousTransform.hh
frankdt
/
concatenate_poses.cc
random
/
random.hh
liz
/
consolidate_clusters.cc
util.hh
james
/
constraints_matrix.cc
random
/
random.hh
james
/
constraints_matrix.cc
xyzVector.hh
james
/
constraints_viewer.cc
random
/
random.hh
james
/
constraints_viewer.cc
xyzVector.hh
mseetin
/
convert_pdb_to_silent_file.cc
conversions.hh
mseetin
/
convert_pdb_to_silent_file.cc
xyzMatrix.hh
mseetin
/
convert_pdb_to_silent_file.cc
xyzVector.hh
awatkins
/
cov_hbs.cc
conversions.hh
awatkins
/
cov_hbs.cc
random
/
random.hh
awatkins
/
cov_hbs.cc
xyz.functions.hh
awatkins
/
cov_peptidomimetic_creator.cc
conversions.hh
awatkins
/
cov_peptidomimetic_creator.cc
random
/
random.hh
awatkins
/
cov_peptidomimetic_creator.cc
xyz.functions.hh
awatkins
/
cov_test.cc
conversions.hh
gktaylor
/
create_constraints.cc
random
/
random.hh
gktaylor
/
create_constraints.cc
xyzVector.hh
will
/
old
/
crossmatch.cc
NumericTraits.hh
will
/
old
/
crossmatch.cc
random
/
random.hh
will
/
old
/
crossmatch.cc
model_quality
/
rms.hh
will
/
old
/
crossmatch.cc
xyz.functions.hh
will
/
old
/
crossmatch.cc
xyz.io.hh
will
/
old
/
crossmatch_3e.cc
random
/
random.hh
will
/
old
/
crossmatch_3e.cc
model_quality
/
rms.hh
will
/
old
/
crossmatch_3e.cc
xyz.functions.hh
will
/
old
/
crossmatch_3e.cc
xyz.io.hh
will
/
old
/
crossmatch_d2.cc
NumericTraits.hh
will
/
old
/
crossmatch_d2.cc
random
/
random.hh
will
/
old
/
crossmatch_d2.cc
model_quality
/
rms.hh
will
/
old
/
crossmatch_d2.cc
xyz.functions.hh
will
/
old
/
crossmatch_d2.cc
xyz.io.hh
frank
/
cryst_design.cc
fourier
/
FFT.hh
frank
/
cryst_design.cc
random
/
random.hh
frank
/
cryst_design.cc
random
/
random_permutation.hh
frank
/
cryst_design.cc
UniformRotationSampler.hh
frank
/
cryst_design.cc
xyz.functions.hh
frank
/
cryst_design.cc
xyzMatrix.hh
frank
/
cryst_design.cc
xyzVector.hh
frank
/
cryst_gen.cc
constants.hh
frank
/
cryst_gen.cc
xyz.functions.hh
frank
/
cryst_gen.cc
xyzMatrix.hh
frank
/
cryst_gen.cc
xyzVector.hh
frank
/
cryst_reporters.hh
random
/
random.hh
frank
/
cryst_reporters.hh
xyzMatrix.hh
frank
/
cryst_reporters.hh
xyzVector.hh
james
/
cs_align.cc
random
/
random.hh
james
/
cst_func.cc
random
/
random.hh
james
/
cst_func.cc
xyzVector.hh
colin
/
cterdesign.cc
random
/
random.hh
jacob
/
cxdesign.cc
conversions.hh
jacob
/
cxdesign.cc
random
/
random.hh
jacob
/
cxdesign.cc
model_quality
/
rms.hh
jacob
/
cxdesign.cc
xyz.functions.hh
jacob
/
cxdesign.cc
xyz.io.hh
will
/
old
/
CXdock.cc
conversions.hh
jacob
/
cxdock.cc
conversions.hh
will
/
old
/
CXdock.cc
random
/
random.hh
jacob
/
cxdock.cc
random
/
random.hh
will
/
old
/
CXdock.cc
model_quality
/
rms.hh
jacob
/
cxdock.cc
model_quality
/
rms.hh
will
/
old
/
CXdock.cc
xyz.functions.hh
jacob
/
cxdock.cc
xyz.functions.hh
will
/
old
/
CXdock.cc
xyz.io.hh
jacob
/
cxdock.cc
xyz.io.hh
will
/
old
/
CXdock.cc
xyzTransform.hh
will
/
old
/
CXdock.cc
xyzVector.hh
will
/
old
/
cxdock_sheet.cc
conversions.hh
will
/
old
/
cxdock_sheet.cc
random
/
random.hh
will
/
old
/
cxdock_sheet.cc
model_quality
/
rms.hh
will
/
old
/
cxdock_sheet.cc
xyz.functions.hh
will
/
old
/
cxdock_sheet.cc
xyz.io.hh
will
/
old
/
CXdock_TMP.cc
conversions.hh
will
/
old
/
CXdock_TMP.cc
random
/
random.hh
will
/
old
/
CXdock_TMP.cc
model_quality
/
rms.hh
will
/
old
/
CXdock_TMP.cc
xyz.functions.hh
will
/
old
/
CXdock_TMP.cc
xyz.io.hh
lior
/
CycDsulf.cc
constants.hh
lior
/
CycDsulf.cc
random
/
random.hh
will
/
old
/
cycgly_bbg8t3a.cc
random
/
random.hh
will
/
old
/
cycgly_bbg8t3a.cc
xyz.functions.hh
will
/
old
/
cycgly_bbg8t3a.cc
xyz.io.hh
will
/
old
/
cycgly_canonical.cc
random
/
random.hh
will
/
old
/
cycgly_canonical.cc
xyz.functions.hh
will
/
old
/
cycgly_canonical.cc
xyz.io.hh
will
/
old
/
cycgly_superimpose.cc
random
/
random.hh
will
/
old
/
cycgly_superimpose.cc
xyz.functions.hh
will
/
old
/
cycgly_superimpose.cc
xyz.io.hh
will
/
old
/
cycgly_target.cc
random
/
random.hh
will
/
old
/
cycgly_target.cc
xyz.functions.hh
will
/
old
/
cycgly_target.cc
xyz.io.hh
lior
/
CycPepMain.cc
random
/
random.hh
lior
/
CycPepMain.cc
random
/
random_permutation.hh
will
/
old
/
cycsamp.cc
random
/
random.hh
will
/
old
/
cycsamp.cc
xyz.functions.hh
will
/
old
/
cycsamp.cc
xyz.io.hh
will
/
old
/
d3_bpy_linker.cc
conversions.hh
will
/
old
/
d3_bpy_linker.cc
random
/
random.hh
will
/
old
/
d3_bpy_linker.cc
model_quality
/
rms.hh
will
/
old
/
d3_bpy_linker.cc
xyz.functions.hh
will
/
old
/
d3_bpy_linker.cc
xyz.io.hh
will
/
old
/
d3_bpy_linker.cc
xyzVector.hh
habib
/
david_align_and_recompute_score_and_rmsd.cc
model_quality
/
rms.hh
habib
/
david_align_append_and_recompute_score_and_rmsd.cc
model_quality
/
rms.hh
habib
/
david_darc_multirun.cc
conversions.hh
habib
/
david_darc_multirun.cc
model_quality
/
maxsub.hh
habib
/
david_darc_multirun.cc
model_quality
/
rms.hh
habib
/
david_darc_multirun.cc
xyz.functions.hh
habib
/
david_darc_multirun.cc
xyzMatrix.hh
habib
/
david_find_best_contact_pocket.cc
random
/
random.hh
habib
/
david_find_best_contact_pocket.cc
xyz.functions.hh
habib
/
david_find_best_contact_pocket.cc
xyzMatrix.hh
habib
/
david_find_best_pocket.cc
random
/
random.hh
habib
/
david_find_best_pocket.cc
xyz.functions.hh
habib
/
david_find_best_pocket.cc
xyzMatrix.hh
habib
/
david_find_surface_residues.cc
random
/
random.hh
habib
/
david_rotation_experiment.cc
random
/
random.fwd.hh
habib
/
david_rotation_experiment.cc
xyz.functions.hh
habib
/
david_rotation_experiment.cc
xyzMatrix.hh
dekim
/
decoy_features.cc
numeric.functions.hh
lemmon
/
deepMove.cc
xyzVector.hh
james
/
density_grid.cc
kdtree
/
KDPoint.hh
james
/
density_grid.cc
kdtree
/
KDPointList.hh
james
/
density_grid.cc
kdtree
/
KDTree.hh
james
/
density_grid.cc
kdtree
/
util.hh
james
/
density_grid.cc
kdtree
/
WrappedReal.hh
neil
/
des_pos_ddG.cc
random
/
random.hh
will
/
old
/
design_DL.cc
conversions.hh
will
/
old
/
design_DL.cc
random
/
random.hh
will
/
old
/
design_DL.cc
xyz.functions.hh
will
/
old
/
design_DL.cc
xyz.io.hh
will
/
old
/
design_frags.cc
xyz.functions.hh
will
/
old
/
design_frags.cc
xyzMatrix.hh
will
/
old
/
design_frags.cc
xyzVector.hh
neil
/
design_symm.bak.110314.cc
random
/
random.hh
neil
/
design_symm.cc
random
/
random.hh
neil
/
design_symm_110330_good.cc
random
/
random.hh
neil
/
design_symm_no_hack_elec.cc
random
/
random.hh
will
/
old
/
designability_stats.cc
conversions.hh
will
/
old
/
designability_stats.cc
random
/
random.hh
will
/
old
/
designability_stats.cc
model_quality
/
rms.hh
will
/
old
/
designability_stats.cc
xyz.functions.hh
will
/
old
/
designability_stats.cc
xyz.io.hh
javierbq
/
detect_symmetry.cc
xyz.functions.hh
javierbq
/
detect_symmetry.cc
xyzMatrix.hh
javierbq
/
detect_symmetry.cc
xyzVector.hh
amelie
/
detect_tight_clusters.cc
random
/
random.hh
amelie
/
detect_tight_clusters.cc
xyzVector.hh
kale
/
examples
/
dihedral.cc
xyz.functions.hh
kale
/
examples
/
dihedral.cc
xyzVector.hh
phil
/
dimer_relax.cc
random
/
random.hh
will
/
old
/
disulf_frag_match.cc
xyz.functions.hh
will
/
old
/
disulf_frag_match.cc
xyz.io.hh
will
/
old
/
disulf_frag_search.cc
xyz.functions.hh
will
/
old
/
disulf_frag_search.cc
xyz.io.hh
will
/
old
/
disulf_stat.cc
xyz.functions.hh
will
/
old
/
disulf_stat.cc
xyz.io.hh
blivens
/
disulfide_scorer.cc
random
/
random.hh
dgront
/
experiments
/
DisulfideBondEnergy.cc
xyz.functions.hh
dgront
/
experiments
/
DisulfideBondEnergy.cc
xyzMatrix.hh
phil
/
dna_design_test.cc
random
/
random_permutation.hh
phil
/
dna_dr_test.cc
random
/
random.hh
phil
/
dna_dr_test.cc
xyz.functions.hh
phil
/
dna_dr_test.cc
xyzMatrix.hh
phil
/
dna_dr_test.cc
xyzVector.hh
phil
/
dna_relax.cc
random
/
random.hh
phil
/
dna_relax.cc
random
/
random_permutation.hh
phil
/
dna_spec_test.cc
random
/
random.hh
phil
/
dna_spec_test.cc
xyz.functions.hh
phil
/
dna_spec_test.cc
xyzMatrix.hh
phil
/
dna_spec_test.cc
xyzVector.hh
will
/
old
/
dock_asym.cc
conversions.hh
will
/
old
/
dock_asym.cc
random
/
random.hh
will
/
old
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dock_asym.cc
model_quality
/
rms.hh
will
/
old
/
dock_asym.cc
xyz.functions.hh
will
/
old
/
dock_asym.cc
xyz.io.hh
monica
/
dock_test.cc
random
/
random.hh
chrisk
/
domain_assemble.cc
random
/
random.hh
chrisk
/
domain_assemble.cc
xyzMatrix.hh
chrisk
/
domain_assemble.cc
xyzVector.hh
james
/
dp_align.cc
random
/
random.hh
will
/
old
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dubois.cc
random
/
random.hh
will
/
old
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dubois.cc
model_quality
/
rms.hh
will
/
old
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dubois.cc
xyz.functions.hh
will
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old
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dubois.cc
xyz.io.hh
will
/
old
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dubois_graft.cc
random
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random.hh
will
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old
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dubois_graft.cc
model_quality
/
rms.hh
will
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old
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dubois_graft.cc
xyz.functions.hh
will
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old
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dubois_graft.cc
xyz.io.hh
will
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old
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dump_res.cc
random
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random.hh
will
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old
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dump_res.cc
model_quality
/
rms.hh
will
/
old
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dump_res.cc
xyz.functions.hh
will
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old
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dump_res.cc
xyz.io.hh
will
/
old
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dxdock.cc
conversions.hh
will
/
old
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dxdock.cc
random
/
random.hh
will
/
old
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dxdock.cc
model_quality
/
rms.hh
will
/
old
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dxdock.cc
xyz.functions.hh
will
/
old
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dxdock.cc
xyz.io.hh
will
/
old
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dxdock_movie.cc
conversions.hh
will
/
old
/
dxdock_movie.cc
random
/
random.hh
will
/
old
/
dxdock_movie.cc
model_quality
/
rms.hh
will
/
old
/
dxdock_movie.cc
xyz.functions.hh
will
/
old
/
dxdock_movie.cc
xyz.io.hh
will
/
old
/
dxdock_movie.cc
xyzTransform.hh
will
/
old
/
dxdock_movie.cc
xyzVector.hh
mike
/
energy_diff.cc
random
/
random.hh
liz
/
ensemble_generator.cc
random
/
random.hh
liz
/
ensemble_generator.cc
xyzVector.hh
liz
/
ensemble_generator_score12_sidechain.cc
random
/
random.hh
liz
/
ensemble_generator_score12_sidechain.cc
xyzVector.hh
neil
/
enumeration_test.cc
random
/
random.hh
rhiju
/
legacy
/
erraser_monte_carlo.cc
random
/
random.hh
brunette
/
evalFullLength.cc
conversions.hh
brunette
/
evalFullLength.cc
trig.functions.hh
brunette
/
evalFullLength.cc
xyz.functions.hh
brunette
/
evalFullLength.cc
xyzVector.hh
brunette
/
evalRepeats.cc
conversions.hh
brunette
/
evalRepeats.cc
trig.functions.hh
brunette
/
evalRepeats.cc
xyz.functions.hh
brunette
/
evalRepeats.cc
xyzVector.hh
mike
/
evolution.cc
random
/
random.hh
barak
/
extend_range.cc
random
/
random.hh
brunette
/
extractNativeRepeats.cc
conversions.hh
brunette
/
extractNativeRepeats.cc
random
/
random.hh
brunette
/
extractNativeRepeats.cc
trig.functions.hh
brunette
/
extractNativeRepeats.cc
xyz.functions.hh
brunette
/
extractNativeRepeats.cc
xyzMatrix.hh
brunette
/
extractNativeRepeats.cc
xyzVector.hh
frank
/
fasol_perres.cc
xyzVector.hh
james
/
filter_sequences.cc
random
/
random.hh
brunette
/
filterAlignments.cc
xyzVector.hh
amuenks
/
find_ligand_local_res.cc
random
/
random.hh
amuenks
/
find_ligand_local_res.cc
xyzMatrix.hh
amuenks
/
find_ligand_local_res.cc
xyzVector.hh
amuenks
/
find_ligand_local_res.cc
xyzVector.io.hh
brunette
/
findNaturallyOccuringAlphaRepeats.cc
conversions.hh
brunette
/
findNaturallyOccuringAlphaRepeats.cc
trig.functions.hh
brunette
/
findNaturallyOccuringAlphaRepeats.cc
xyz.functions.hh
brunette
/
findNaturallyOccuringAlphaRepeats.cc
xyzVector.hh
will
/
old
/
flail.cc
random
/
random.hh
will
/
old
/
flail.cc
xyz.functions.hh
will
/
old
/
flail.cc
xyzTransform.io.hh
dwkulp
/
flexibleLoopDesign.cc
random
/
random.hh
will
/
old
/
fnd_dutton.cc
xyz.functions.hh
will
/
old
/
fnd_dutton.cc
xyz.io.hh
will
/
old
/
for_tim.cc
xyzTransform.hh
kyleb
/
fragment_extract.cc
angle.functions.hh
kyleb
/
fragment_extract.cc
conversions.hh
kyleb
/
fragment_extract.cc
random
/
random.hh
kyleb
/
fragment_extract.cc
xyz.functions.hh
kyleb
/
fragment_extract.cc
xyzVector.hh
javierbq
/
fragment_sequence_quality.cc
angle.functions.hh
javierbq
/
fragment_sequence_quality.cc
conversions.hh
javierbq
/
fragment_sequence_quality.cc
xyz.functions.hh
will
/
old
/
FunGroupTK.cc
constants.hh
will
/
old
/
FunGroupTK.cc
random
/
random.hh
will
/
old
/
FunGroupTK.cc
xyz.functions.hh
will
/
old
/
FunGroupTK.cc
xyz.io.hh
will
/
old
/
FunGroupTK_test.cc
xyz.functions.hh
will
/
old
/
FunGroupTK_test.cc
xyz.io.hh
will
/
old
/
gen3bpy.cc
conversions.hh
will
/
old
/
gen3bpy.cc
random
/
random.hh
will
/
old
/
gen3bpy.cc
xyz.functions.hh
will
/
old
/
gen3bpy.cc
xyz.io.hh
will
/
old
/
gen_cyc_gly.cc
random
/
random.hh
will
/
old
/
gen_cyc_gly.cc
xyz.functions.hh
will
/
old
/
gen_cyc_gly.cc
xyz.io.hh
will
/
old
/
gen_cyc_gly_cst.cc
NumericTraits.hh
will
/
old
/
gen_cyc_gly_cst.cc
random
/
random.hh
will
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old
/
gen_cyc_gly_cst.cc
xyz.functions.hh
will
/
old
/
gen_cyc_gly_cst.cc
xyz.io.hh
will
/
old
/
gen_d2.cc
kinematic_closure
/
bridgeObjects.hh
will
/
old
/
gen_d2.cc
random
/
random.hh
will
/
old
/
gen_d2.cc
xyz.functions.hh
will
/
old
/
gen_d2.cc
xyz.io.hh
will
/
old
/
gen_d2_3his_ooc.cc
kinematic_closure
/
bridgeObjects.hh
will
/
old
/
gen_d2_3his_ooc.cc
kinematic_closure
/
kinematic_closure_helpers.hh
will
/
old
/
gen_d2_3his_ooc.cc
random
/
random.hh
will
/
old
/
gen_d2_3his_ooc.cc
model_quality
/
rms.hh
will
/
old
/
gen_d2_3his_ooc.cc
xyz.functions.hh
will
/
old
/
gen_d2_3his_ooc.cc
xyz.io.hh
will
/
old
/
gen_d2_4his.cc
kinematic_closure
/
bridgeObjects.hh
will
/
old
/
gen_d2_4his.cc
random
/
random.hh
will
/
old
/
gen_d2_4his.cc
xyz.functions.hh
will
/
old
/
gen_d2_4his.cc
xyz.io.hh
will
/
old
/
gen_d2_hhhc.cc
kinematic_closure
/
bridgeObjects.hh
will
/
old
/
gen_d2_hhhc.cc
random
/
random.hh
will
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old
/
gen_d2_hhhc.cc
xyz.functions.hh
will
/
old
/
gen_d2_hhhc.cc
xyz.io.hh
will
/
old
/
gen_disulf_homodimer.cc
NumericTraits.hh
will
/
old
/
gen_disulf_homodimer.cc
random
/
random.hh
will
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old
/
gen_disulf_homodimer.cc
xyz.functions.hh
will
/
old
/
gen_disulf_homodimer.cc
xyz.io.hh
will
/
old
/
gen_homo_hc.cc
kinematic_closure
/
bridgeObjects.hh
will
/
old
/
gen_homo_hc.cc
random
/
random.hh
will
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old
/
gen_homo_hc.cc
xyz.functions.hh
will
/
old
/
gen_homo_hc.cc
xyz.io.hh
will
/
old
/
gen_trimer_disulf.cc
conversions.hh
will
/
old
/
gen_trimer_disulf.cc
random
/
random.hh
will
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old
/
gen_trimer_disulf.cc
xyz.functions.hh
will
/
old
/
gen_trimer_disulf.cc
xyz.io.hh
will
/
old
/
gen_xtal_dimer_from_trimer.cc
conversions.hh
will
/
old
/
gen_xtal_dimer_from_trimer.cc
random
/
random.hh
will
/
old
/
gen_xtal_dimer_from_trimer.cc
xyz.functions.hh
will
/
old
/
gen_xtal_dimer_from_trimer.cc
xyz.io.hh
dan
/
generate_matcher_constraints.cc
constants.hh
dan
/
generate_matcher_constraints.cc
xyz.functions.hh
combss
/
generate_orbital_statistics.cc
histograms
/
TwoDHistogram.hh
will
/
old
/
genI213.cc
conversions.hh
will
/
old
/
genI213.cc
random
/
random.hh
will
/
old
/
genI213.cc
xyz.functions.hh
will
/
old
/
genI213.cc
xyz.io.hh
will
/
old
/
genI213_2comp.cc
conversions.hh
will
/
old
/
genI213_2comp.cc
random
/
random.hh
will
/
old
/
genI213_2comp.cc
xyz.functions.hh
will
/
old
/
genI213_2comp.cc
xyz.io.hh
will
/
old
/
genI213_2dsf.cc
conversions.hh
will
/
old
/
genI213_2dsf.cc
random
/
random.hh
will
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old
/
genI213_2dsf.cc
xyz.functions.hh
will
/
old
/
genI213_2dsf.cc
xyz.io.hh
will
/
old
/
genI213_gensym.cc
conversions.hh
will
/
old
/
genI213_gensym.cc
random
/
random.hh
will
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old
/
genI213_gensym.cc
model_quality
/
rms.hh
will
/
old
/
genI213_gensym.cc
xyz.functions.hh
will
/
old
/
genI213_gensym.cc
xyz.io.hh
will
/
old
/
genI213_nocontacts.cc
conversions.hh
will
/
old
/
genI213_nocontacts.cc
random
/
random.hh
will
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old
/
genI213_nocontacts.cc
xyz.functions.hh
will
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old
/
genI213_nocontacts.cc
xyz.io.hh
will
/
old
/
genmatch.cc
random
/
random.hh
will
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old
/
genmatch.cc
model_quality
/
rms.hh
will
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old
/
genmatch.cc
xyz.functions.hh
will
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old
/
genmatch.cc
xyz.io.hh
will
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old
/
genmatch_3bpy.cc
conversions.hh
will
/
old
/
genmatch_3bpy.cc
random
/
random.hh
will
/
old
/
genmatch_3bpy.cc
model_quality
/
rms.hh
will
/
old
/
genmatch_3bpy.cc
xyz.functions.hh
will
/
old
/
genmatch_3bpy.cc
xyz.io.hh
will
/
old
/
genmatch_d6_bhhcg.cc
random
/
random.hh
will
/
old
/
genmatch_d6_bhhcg.cc
model_quality
/
rms.hh
will
/
old
/
genmatch_d6_bhhcg.cc
xyz.functions.hh
will
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old
/
genmatch_d6_bhhcg.cc
xyz.io.hh
will
/
old
/
genmatch_d6_bpy.cc
xyz.functions.hh
will
/
old
/
genmatch_d6_bpy.cc
xyz.io.hh
will
/
old
/
genmatch_m8.cc
random
/
random.hh
will
/
old
/
genmatch_m8.cc
model_quality
/
rms.hh
will
/
old
/
genmatch_m8.cc
xyz.functions.hh
will
/
old
/
genmatch_m8.cc
xyz.io.hh
will
/
old
/
genP23.cc
conversions.hh
will
/
old
/
genP23.cc
random
/
random.hh
will
/
old
/
genP23.cc
model_quality
/
rms.hh
will
/
old
/
genP23.cc
xyz.functions.hh
will
/
old
/
genP23.cc
xyz.io.hh
will
/
old
/
gensym_3bpy_from_dimer.cc
conversions.hh
will
/
old
/
gensym_3bpy_from_dimer.cc
random
/
random.hh
will
/
old
/
gensym_3bpy_from_dimer.cc
model_quality
/
rms.hh
will
/
old
/
gensym_3bpy_from_dimer.cc
xyz.functions.hh
will
/
old
/
gensym_3bpy_from_dimer.cc
xyz.io.hh
will
/
old
/
gentetra.cc
conversions.hh
will
/
old
/
gentetra.cc
random
/
random.hh
will
/
old
/
gentetra.cc
model_quality
/
rms.hh
will
/
old
/
gentetra.cc
xyz.functions.hh
will
/
old
/
gentetra.cc
xyz.io.hh
will
/
old
/
gentetra_bpy_from_znhis.cc
conversions.hh
will
/
old
/
gentetra_bpy_from_znhis.cc
random
/
random.hh
will
/
old
/
gentetra_bpy_from_znhis.cc
xyz.functions.hh
will
/
old
/
gentetra_bpy_from_znhis.cc
xyz.io.hh
will
/
old
/
gentetra_from_trimer.cc
conversions.hh
will
/
old
/
gentetra_from_trimer.cc
random
/
random.hh
will
/
old
/
gentetra_from_trimer.cc
xyz.functions.hh
will
/
old
/
gentetra_from_trimer.cc
xyz.io.hh
awatkins
/
get_dihedral_b3aa.cc
angle.functions.hh
doug
/
get_dihedral_peptide.cc
angle.functions.hh
doug
/
get_dihedral_peptoid.cc
angle.functions.hh
will
/
old
/
getDistConstraints.cc
random
/
random.hh
will
/
old
/
getDistConstraints.cc
model_quality
/
rms.hh
will
/
old
/
gpu
/
gpu_cbdock.cc
conversions.hh
will
/
old
/
gpu
/
gpu_cbdock.cc
random
/
random.hh
will
/
old
/
gpu
/
gpu_cbdock.cc
model_quality
/
rms.hh
will
/
old
/
gpu
/
gpu_cbdock.cc
xyz.functions.hh
will
/
old
/
gpu
/
gpu_cbdock.cc
xyz.io.hh
will
/
old
/
gpu
/
gpu_linker.cc
conversions.hh
will
/
old
/
gpu
/
gpu_linker.cc
random
/
random.hh
will
/
old
/
gpu
/
gpu_linker.cc
model_quality
/
rms.hh
will
/
old
/
gpu
/
gpu_linker.cc
xyz.functions.hh
will
/
old
/
gpu
/
gpu_linker.cc
xyz.io.hh
will
/
old
/
gpu
/
gpu_mat_vec.hh
IOTraits.hh
will
/
old
/
gpu
/
gpu_refold.hh
xyz.io.hh
will
/
old
/
gpu
/
gpu_score.cc
conversions.hh
will
/
old
/
gpu
/
gpu_score.cc
random
/
random.hh
will
/
old
/
gpu
/
gpu_score.cc
model_quality
/
rms.hh
will
/
old
/
gpu
/
gpu_score.cc
xyz.functions.hh
will
/
old
/
gpu
/
gpu_score.cc
xyz.io.hh
will
/
old
/
gpu
/
gpu_test.cc
conversions.hh
will
/
old
/
gpu
/
gpu_test.cc
random
/
random.hh
will
/
old
/
gpu
/
gpu_test.cc
model_quality
/
rms.hh
will
/
old
/
gpu
/
gpu_test.cc
xyz.functions.hh
will
/
old
/
gpu
/
gpu_test.cc
xyz.io.hh
will
/
old
/
gpu
/
gpu_test_Mxform.cc
conversions.hh
will
/
old
/
gpu
/
gpu_test_Mxform.cc
random
/
random.hh
will
/
old
/
gpu
/
gpu_test_Mxform.cc
model_quality
/
rms.hh
will
/
old
/
gpu
/
gpu_test_Mxform.cc
xyz.functions.hh
will
/
old
/
gpu
/
gpu_test_Mxform.cc
xyz.io.hh
momeara
/
hbond_param_sweep.cc
xyz.functions.hh
bder
/
HbondZinc.cc
conversions.hh
bder
/
HbondZincBackbone.cc
conversions.hh
bder
/
HbondZincHHHO.cc
conversions.hh
bder
/
HbondZincHHHO.cc
xyz.io.hh
chrisk
/
hbscan.cc
constants.hh
chrisk
/
hbscan.cc
conversions.hh
will
/
old
/
hczndimer.cc
conversions.hh
will
/
old
/
hczndimer.cc
random
/
random.hh
will
/
old
/
hczndimer.cc
model_quality
/
rms.hh
will
/
old
/
hczndimer.cc
xyz.functions.hh
will
/
old
/
hczndimer.cc
xyz.io.hh
smlewis
/
hect
/
HECT.hh
xyz.functions.hh
will
/
old
/
helix_assembly.cc
conversions.hh
will
/
old
/
helix_assembly.cc
random
/
random.hh
will
/
old
/
helix_assembly.cc
model_quality
/
rms.hh
will
/
old
/
helix_assembly.cc
xyz.functions.hh
will
/
old
/
helix_assembly.cc
xyz.io.hh
will
/
old
/
helix_assembly.cc
xyzTransform.hh
will
/
old
/
helix_assembly.cc
xyzVector.hh
guffysl
/
heme_binding.cc
conversions.hh
guffysl
/
heme_binding.cc
random
/
random.hh
will
/
old
/
heterodock.cc
conversions.hh
will
/
old
/
heterodock.cc
random
/
random.hh
will
/
old
/
heterodock.cc
model_quality
/
rms.hh
will
/
old
/
heterodock.cc
xyz.functions.hh
will
/
old
/
heterodock.cc
xyz.io.hh
will
/
old
/
heterodock.cc
xyzTransform.hh
will
/
old
/
heterodock.cc
xyzVector.hh
dgront
/
hierarchical_clustering.cc
agglomerative_hierarchical_clustering.hh
dgront
/
hierarchical_clustering.cc
ClusteringTreeNode.hh
will
/
old
/
holes2_training_data.cc
model_quality
/
rms.hh
will
/
old
/
holes2_training_data.cc
model_quality
/
RmsData.hh
aginsparg
/
holes_identifier.cc
geometry
/
hashing
/
xyzStripeHash.fwd.hh
aginsparg
/
holes_identifier.cc
geometry
/
hashing
/
xyzStripeHash.hh
aginsparg
/
holes_identifier.cc
xyzVector.hh
will
/
old
/
holes_pbpdb.cc
random
/
random.hh
will
/
old
/
holes_pbpdb.cc
model_quality
/
rms.hh
will
/
old
/
hubabinitio.cc
random
/
random.hh
will
/
old
/
hubabinitio.cc
model_quality
/
rms.hh
will
/
old
/
hubabinitio.cc
xyz.functions.hh
will
/
old
/
hubabinitio.cc
xyz.io.hh
will
/
old
/
hubdenovo.cc
random
/
random.hh
will
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old
/
hubdenovo.cc
model_quality
/
rms.hh
will
/
old
/
hubdenovo.cc
xyz.functions.hh
will
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old
/
hubdenovo.cc
xyz.io.hh
will
/
old
/
hubfragdesign.cc
random
/
random.hh
will
/
old
/
hubfragdesign.cc
model_quality
/
rms.hh
will
/
old
/
hubfragdesign.cc
xyz.functions.hh
will
/
old
/
hubfragdesign.cc
xyz.io.hh
james
/
hybrid.cc
model_quality
/
rms.hh
kevin
/
hydrate.cc
HomogeneousTransform.hh
kevin
/
hydrate.cc
xyz.functions.hh
kevin
/
hydrate.cc
xyzMatrix.hh
kevin
/
hydrate.cc
xyzVector.hh
will
/
old
/
IKFGDB.cc
constants.hh
will
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old
/
IKFGDB.cc
random
/
random.hh
will
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old
/
IKFGDB.cc
xyz.functions.hh
will
/
old
/
IKFGDB.cc
xyz.io.hh
jkleman
/
input_from_cmd.cc
xyzVector.hh
will
/
old
/
isct_test.cc
constants.hh
will
/
old
/
isct_test.cc
xyz.functions.hh
will
/
old
/
isct_test.cc
xyz.io.hh
bcorreia
/
iterative_design.cc
xyzVector.hh
james
/
jcluster.cc
random
/
random.fwd.hh
james
/
jdock.cc
xyzVector.hh
johnk
/
johnk_interface_geosol_minimization.cc
constants.hh
johnk
/
johnk_parametrize_geometric_solvation.cc
constants.hh
johnk
/
johnk_parametrize_geometric_solvation.cc
conversions.hh
james
/
jseq.cc
xyzVector.hh
bjornw
/
jumpRT_test.cc
xyz.functions.hh
bjornw
/
jumpRT_test.cc
xyzVector.hh
bjornw
/
jumpRT_test.cc
xyzVector.io.hh
dgront
/
JumpSpecificAbrelax.cc
random
/
random.hh
biokhar
/
karen_compare_different_proteins.cc
xyz.functions.hh
cmiles
/
kcluster.cc
random
/
random.hh
james
/
kdtree_disulf.cc
kdtree
/
calc_distance.hh
james
/
kdtree_disulf.cc
kdtree
/
KDPoint.hh
james
/
kdtree_disulf.cc
kdtree
/
KDPointList.hh
james
/
kdtree_disulf.cc
kdtree
/
KDTree.hh
james
/
kdtree_disulf.cc
kdtree
/
nearest_neighbors.hh
james
/
kdtree_disulf.cc
random
/
random.hh
james
/
kdtree_disulf.cc
kdtree
/
util.hh
james
/
kdtree_disulf.cc
kdtree
/
WrappedPrimitive.hh
james
/
kdtree_disulf.cc
xyz.functions.hh
james
/
kdtree_disulf.cc
xyzMatrix.fwd.hh
james
/
kdtree_disulf.cc
xyzMatrix.hh
kevin
/
khSandbox.cc
conversions.hh
kevin
/
khSandbox.cc
xyzVector.hh
kevin
/
khSandbox2.cc
xyzVector.hh
kevin
/
khXtal_water_bunsat.cc
xyzVector.hh
kale
/
examples
/
kic_bug.cc
random
/
random.hh
kale
/
examples
/
kic_rama_bias.cc
conversions.hh
kale
/
examples
/
kic_rama_bias.cc
random
/
random.hh
kale
/
examples
/
kick_n_terminus.cc
random
/
random.hh
kale
/
examples
/
kick_n_terminus.cc
xyzVector.hh
kale
/
examples
/
kick_n_terminus.cc
xyzVector.io.hh
kale
/
kic_refactor
/
KicSandbox.hh
random
/
random.hh
fcchou
/
lariat_modeling.cc
conversions.hh
fcchou
/
lariat_modeling.cc
random
/
random.hh
fcchou
/
lariat_modeling.cc
xyzMatrix.hh
fcchou
/
lariat_modeling.cc
xyzVector.hh
kdrew
/
ld_converter.cc
conversions.hh
dgront
/
LibraryJumpSetup.cc
random
/
random.hh
bazzoli
/
lig_polar_sat.cc
xyzVector.hh
aginsparg
/
ligand_discovery_search_protocol.cc
geometry
/
hashing
/
xyzStripeHash.fwd.hh
aginsparg
/
ligand_discovery_search_protocol.cc
geometry
/
hashing
/
xyzStripeHash.hh
aginsparg
/
ligand_discovery_search_protocol.cc
xyzVector.hh
ian
/
ligand_evis.cc
random
/
random.hh
ian
/
ligand_evis.cc
random
/
random_permutation.hh
mdsmith
/
ligand_motifs.cc
random
/
random.hh
mdsmith
/
ligand_motifs.cc
xyzVector.hh
ralford
/
archive
/
framework_devel
/
local_minimize.cc
random
/
random.hh
dan
/
loop_minimize.cc
model_quality
/
rms.hh
phil
/
loop_model.hh
random
/
random.hh
phil
/
loop_model.hh
random
/
random_permutation.hh
phil
/
loop_model.hh
xyz.functions.hh
phil
/
loop_model.hh
xyzMatrix.hh
phil
/
loop_model.hh
xyzVector.hh
mike
/
loophash.cc
random
/
random.hh
mike
/
loophash.cc
random
/
random_permutation.hh
mike
/
loophash_analyse.cc
HomogeneousTransform.hh
mike
/
loophash_analyse.cc
geometry
/
hashing
/
SixDHasher.hh
mike
/
loophash_cenrelax.cc
HomogeneousTransform.hh
mike
/
loophash_cenrelax.cc
geometry
/
hashing
/
SixDHasher.hh
mike
/
loophash_test.cc
random
/
random.hh
fordas
/
lsmgridprobe.cc
sphericalVector.hh
fordas
/
lsmgridprobe.cc
xyz.functions.hh
fordas
/
lsmgridprobe.cc
xyzMatrix.hh
fordas
/
lsmgridprobe.cc
xyzVector.hh
awatkins
/
macrocycle_sampling.cc
random
/
random.hh
awatkins
/
macrocycle_sampling.cc
xyzVector.hh
awatkins
/
make_a3b_bundle.cc
constants.hh
awatkins
/
make_a3b_bundle.cc
random
/
random.hh
awatkins
/
make_a3b_bundle.cc
random
/
uniform.hh
awatkins
/
make_ideal_a3b_fragment.cc
random
/
random.hh
james
/
make_profile.cc
random
/
random.hh
csykang
/
make_retroinverso.cc
conversions.hh
csykang
/
make_retroinverso.cc
xyzVector.hh
frank
/
make_rms_filtered_fragfile.cc
xyz.functions.hh
james
/
mammoth_hack.cc
numeric.functions.hh
james
/
mammoth_hack.cc
random
/
random.fwd.hh
james
/
mammoth_hack.cc
random
/
random.hh
james
/
mammoth_hack.cc
model_quality
/
rms.hh
james
/
mammoth_hack.cc
model_quality
/
RmsData.hh
james
/
mammoth_hack.cc
trig.functions.hh
james
/
mammoth_hack.cc
types.hh
james
/
mammoth_hack.cc
random
/
uniform.hh
james
/
mammoth_hack.cc
xyz.functions.fwd.hh
james
/
mammoth_hack.cc
xyzMatrix.fwd.hh
james
/
mammoth_hack.cc
xyzVector.fwd.hh
james
/
mammoth_hack.cc
xyzVector.hh
frank
/
map_morph.cc
constants.hh
frank
/
map_morph.cc
random
/
random.hh
frank
/
map_morph.cc
xyz.functions.hh
frank
/
map_morph.cc
xyzVector.hh
will
/
old
/
match_disulf.cc
model_quality
/
rms.hh
will
/
old
/
match_disulf.cc
xyzVector.hh
will
/
old
/
match_disulf.cc
xyzVector.io.hh
neil
/
matdes_design.cc
random
/
random.hh
neil
/
matdes_design_2comp.cc
random
/
random.hh
neil
/
matdes_dock.cc
random
/
random.hh
neil
/
matdes_mutalyze.cc
random
/
random.hh
mike
/
md.cc
random
/
random.hh
mike
/
md.cc
xyzVector.hh
andrew
/
measure_catalytic_geometry.cc
xyz.functions.hh
barthp
/
membrane_relax.cc
random
/
random.hh
barthp
/
membrane_relax.cc
xyzVector.hh
ralford
/
archive
/
old_applications
/
membrane_relax2.cc
conversions.hh
ralford
/
archive
/
old_applications
/
membrane_relax2.cc
random
/
random.hh
ralford
/
archive
/
old_applications
/
membrane_sampling.cc
random
/
random.hh
ralford
/
archive
/
old_applications
/
membrane_sampling.cc
xyz.functions.hh
ralford
/
archive
/
old_applications
/
membrane_sampling.cc
xyzVector.hh
awatkins
/
mike_linker_test.cc
NumericTraits.hh
awatkins
/
mike_linker_test.cc
random
/
random.hh
mike
/
mikejd2test.cc
random
/
random.hh
hpark
/
min_test.cc
random
/
random.hh
hpark
/
min_test.cc
xyzVector.hh
hpark
/
min_test_hpark.cc
random
/
random.hh
hpark
/
min_test_hpark.cc
xyzVector.hh
mike
/
minbench.cc
random
/
random.hh
will
/
old
/
minimize.cc
xyz.functions.hh
will
/
old
/
minimize.cc
xyzMatrix.hh
will
/
old
/
minimize.cc
xyzVector.hh
will
/
old
/
minimize_cavities.cc
io.hh
will
/
old
/
minimize_cavities.cc
xyzVector.hh
liz
/
minimize_with_cst.cc
random
/
random.hh
liz
/
minimize_with_cst.cc
xyzVector.hh
ameya
/
mixedMC.cc
random
/
random.hh
will
/
old
/
mkresfile_i213.cc
random
/
random.hh
colin
/
mm_params.cc
conversions.hh
colin
/
mm_params.cc
xyz.functions.hh
jadolfbr
/
model_antibody_basic.cc
constants.hh
jadolfbr
/
model_antibody_basic.cc
random
/
random.hh
jadolfbr
/
model_antibody_basic.cc
xyzVector.hh
james
/
model_quality.cc
numeric.functions.hh
james
/
model_quality.cc
random
/
random.fwd.hh
james
/
model_quality.cc
random
/
random.hh
james
/
model_quality.cc
trig.functions.hh
james
/
model_quality.cc
random
/
uniform.hh
james
/
model_quality.cc
xyz.functions.fwd.hh
james
/
model_quality.cc
xyzMatrix.fwd.hh
james
/
model_quality.cc
xyzVector.fwd.hh
james
/
model_quality.cc
xyzVector.hh
monica
/
monica_relax.cc
random
/
random.hh
liz
/
monomer_ddg.cc
random
/
random.hh
liz
/
monomer_ddg.cc
xyzVector.hh
will
/
old
/
motif_denovo_hb.cc
conversions.hh
will
/
old
/
motif_denovo_hb.cc
random
/
random.hh
will
/
old
/
motif_denovo_hb.cc
model_quality
/
rms.hh
will
/
old
/
motif_denovo_hb.cc
xyz.functions.hh
will
/
old
/
motif_denovo_hb.cc
xyz.io.hh
will
/
old
/
motif_denovo_hb.cc
xyzVector.hh
will
/
old
/
motif_hash_util.cc
conversions.hh
will
/
old
/
motif_hash_util.cc
HomogeneousTransform.hh
will
/
old
/
motif_hash_util.cc
random
/
random.hh
will
/
old
/
motif_hash_util.cc
model_quality
/
rms.hh
will
/
old
/
motif_hash_util.cc
geometry
/
hashing
/
SixDHasher.hh
will
/
old
/
motif_hash_util.cc
xyz.functions.hh
will
/
old
/
motif_hash_util.cc
xyz.io.hh
will
/
old
/
motif_hash_util.cc
xyzVector.hh
phil
/
motif_scan.cc
random
/
random.hh
phil
/
motif_scan.cc
xyzMatrix.hh
phil
/
motif_scan.cc
xyzVector.hh
kkappel
/
move_jump.cc
random
/
random.hh
monica
/
moves_test.cc
random
/
random.hh
jkleman
/
mp_find_interface_test.cc
conversions.hh
jkleman
/
mp_find_interface_test.cc
random
/
random.hh
jkleman
/
mp_find_interface_test.cc
xyz.functions.hh
jkleman
/
mp_find_interface_test.cc
xyzMatrix.hh
jkleman
/
mp_find_interface_test.cc
xyzVector.hh
jkleman
/
mp_parameters.cc
xyzVector.hh
jkleman
/
mpframework_test.cc
xyzVector.hh
jkleman
/
mpframework_test1.cc
conversions.hh
jkleman
/
mpframework_test1.cc
random
/
random.hh
jkleman
/
mpframework_test1.cc
xyz.functions.hh
jkleman
/
mpframework_test1.cc
xyzMatrix.hh
jkleman
/
mpframework_test1.cc
xyzVector.hh
jkleman
/
mpframework_test2.cc
conversions.hh
jkleman
/
mpframework_test2.cc
numeric.functions.hh
jkleman
/
mpframework_test2.cc
util.hh
jkleman
/
mpframework_test2.cc
xyz.functions.hh
jkleman
/
mpframework_test2.cc
xyzVector.hh
andrew
/
mpi_msd.cc
numeric.functions.hh
kale
/
native_ensemble
/
native_ensemble.cc
random
/
random.hh
will
/
old
/
nisod.cc
random
/
random.hh
will
/
old
/
nisod.cc
model_quality
/
rms.hh
will
/
old
/
nisod.cc
xyz.functions.hh
will
/
old
/
nisod.cc
xyz.io.hh
hpark
/
NMsearch.cc
random
/
random.hh
doug
/
noah_score_interface.cc
xyzVector.hh
johnk
/
old_test_geosol_minimization.cc
constants.hh
rhiju
/
legacy
/
OLD_TRIAL_protein_helix_assemble.cc
conversions.hh
rhiju
/
legacy
/
OLD_TRIAL_protein_helix_assemble.cc
xyzVector.hh
opt_e
/
optE_simple.cc
random
/
random.hh
optE
/
optE_simple.cc
random
/
random.hh
opt_e
/
optE_simple.cc
xyzVector.hh
optE
/
optE_simple.cc
xyzVector.hh
jim
/
optE_test.cc
random
/
random.hh
jim
/
optE_test.cc
xyzVector.hh
will
/
old
/
organopv.cc
random
/
random.hh
will
/
old
/
organopv.cc
model_quality
/
rms.hh
will
/
old
/
organopv.cc
xyz.functions.hh
will
/
old
/
organopv.cc
xyz.io.hh
kale
/
kic_refactor
/
ideas
/
original_app.cc
random
/
random.hh
barak
/
overlay_bb_bondangles.cc
random
/
random.hh
barak
/
overlay_sidechains.cc
random
/
random.hh
will
/
old
/
pack_ddg.cc
random
/
random.hh
will
/
old
/
pack_ddg.cc
xyzVector.hh
nobuyasu
/
pair_distance.cc
xyzVector.hh
nannemdp
/
params2pdb.cc
xyz.functions.hh
parin
/
parin_test.cc
conversions.hh
parin
/
parin_test.cc
xyzVector.hh
christophe
/
PCS_main.cc
random
/
random.hh
frank
/
pdb_gen_cryst.cc
xyzMatrix.hh
frank
/
pdb_gen_cryst.cc
xyzVector.hh
will
/
old
/
pentcb.cc
conversions.hh
will
/
old
/
pentcb.cc
random
/
random.hh
will
/
old
/
pentcb.cc
model_quality
/
rms.hh
will
/
old
/
pentcb.cc
xyz.functions.hh
will
/
old
/
pentcb.cc
xyz.io.hh
will
/
old
/
pentcb_design.cc
conversions.hh
will
/
old
/
pentcb_design.cc
random
/
random.hh
will
/
old
/
pentcb_design.cc
model_quality
/
rms.hh
will
/
old
/
pentcb_design.cc
xyz.functions.hh
will
/
old
/
pentcb_design.cc
xyz.io.hh
will
/
old
/
pentcb_test.cc
conversions.hh
will
/
old
/
pentcb_test.cc
random
/
random.hh
will
/
old
/
pentcb_test.cc
model_quality
/
rms.hh
will
/
old
/
pentcb_test.cc
xyz.functions.hh
will
/
old
/
pentcb_test.cc
xyz.io.hh
chrisk
/
pep_analysis.cc
random
/
random.hh
chrisk
/
pep_analysis.cc
xyzVector.hh
chrisk
/
pep_gly.cc
random
/
random.hh
chrisk
/
pep_gly.cc
xyzVector.hh
chrisk
/
pep_nrg.cc
random
/
random.hh
chrisk
/
pep_nrg.cc
xyzVector.hh
chrisk
/
pep_opt.cc
random
/
random.hh
chrisk
/
pep_opt.cc
xyzVector.hh
chrisk
/
pep_opt_parallel.cc
random
/
random.hh
chrisk
/
pep_opt_parallel.cc
random
/
random_permutation.hh
chrisk
/
pep_opt_parallel.cc
xyzVector.hh
chrisk
/
pep_paapp.cc
random
/
random.hh
chrisk
/
pep_paapp.cc
xyzVector.hh
chrisk
/
pep_prep.cc
conversions.hh
chrisk
/
pep_prep.cc
NumericTraits.hh
chrisk
/
pep_prep.cc
random
/
random.hh
chrisk
/
pep_prep.cc
random
/
random_permutation.hh
chrisk
/
pep_prep.cc
xyzVector.hh
chrisk
/
pep_prepspec.cc
random
/
random.hh
chrisk
/
pep_prepspec.cc
xyzVector.hh
chrisk
/
pep_rama.cc
random
/
random.hh
chrisk
/
pep_rama.cc
xyzVector.hh
chrisk
/
pep_ref.cc
random
/
random.hh
chrisk
/
pep_ref.cc
xyzVector.hh
chrisk
/
pep_spec.03-11.cc
random
/
random.hh
chrisk
/
pep_spec.03-11.cc
xyzVector.hh
chrisk
/
pep_spec.06-23.cc
random
/
random.hh
chrisk
/
pep_spec.06-23.cc
xyzVector.hh
chrisk
/
pep_spec.cc
random
/
random.hh
chrisk
/
pep_spec.cc
xyzVector.hh
chrisk
/
pep_spec_flx.cc
random
/
random.hh
chrisk
/
pep_spec_flx.cc
xyzVector.hh
chrisk
/
pep_spec_flx.mov.cc
random
/
random.hh
chrisk
/
pep_spec_flx.mov.cc
xyzVector.hh
chrisk
/
pepspec.cc
random
/
random.hh
chrisk
/
pepspec.cc
xyzVector.hh
chrisk
/
pepspec_anchor_dock.cc
conversions.hh
chrisk
/
pepspec_anchor_dock.cc
NumericTraits.hh
chrisk
/
pepspec_anchor_dock.cc
random
/
random.hh
chrisk
/
pepspec_anchor_dock.cc
random
/
random_permutation.hh
chrisk
/
pepspec_anchor_dock.cc
xyzVector.hh
nir
/
PeptideDeriver.cc
random
/
random.hh
barak
/
PeptideDeriver.cc
random
/
random.hh
barak
/
PeptideDeriver.cc
xyzVector.hh
nir
/
PeptideDeriver.cc
xyzVector.hh
awatkins
/
peptidomimetic_ensembles.cc
random
/
random.hh
awatkins
/
peptidomimetic_ensembles.cc
xyzVector.hh
doug
/
peptoid_rotamer_prediction_benchmark.cc
angle.functions.hh
doug
/
peptoid_rotlibs
/
peptoid_rotlib_test2.cc
angle.functions.hh
doug
/
peptoid_rotlibs
/
peptoid_rotlib_test2.cc
numeric.functions.hh
maprahamian
/
per_residue_solvent_exposure.cc
NumericTraits.hh
kale
/
kic_refactor
/
original
/
perturb_LoopMover_KIC.cc
random
/
random.hh
frank
/
perturb_structure.cc
random
/
random.hh
frank
/
perturb_structure.cc
random
/
random_permutation.hh
james
/
phi_hack.cc
random
/
random.fwd.hh
james
/
phi_hack.cc
random
/
random.hh
phil
/
phil.hh
conversions.hh
phil
/
phil.hh
random
/
random.hh
phil
/
phil.hh
xyz.functions.hh
phil
/
phil.hh
xyzMatrix.hh
phil
/
phil.hh
xyzVector.hh
johnk
/
phosphoArg_build_rotamers.cc
xyzVector.hh
johnk
/
phosphoArg_minimize.cc
xyzVector.hh
barak
/
phosphorylate_position.cc
random
/
random.hh
james
/
pick_frags.cc
random
/
random.hh
will
/
old
/
pilot_packstat.cc
NumericTraits.hh
will
/
old
/
pilot_packstat.cc
random
/
random.hh
will
/
old
/
pilot_packstat.cc
xyz.functions.hh
will
/
old
/
print_dunscores.cc
xyz.functions.hh
will
/
old
/
print_dunscores.cc
xyz.io.hh
barak
/
print_phipsi.cc
constants.hh
barak
/
print_phipsi.cc
random
/
random.hh
james
/
prof_search.cc
random
/
random.hh
frank
/
pseudo_ca_trace.cc
xyz.functions.hh
frank
/
pseudo_ca_trace.cc
xyzVector.hh
olli
/
r_assign_clusters.cc
random
/
random.hh
olli
/
r_check_chainbreak.cc
random
/
random.hh
olli
/
r_convert_frags.cc
random
/
random.hh
olli
/
r_cst_tool.cc
random
/
random.hh
olli
/
r_frag_picker.cc
angle.functions.hh
olli
/
r_frag_picker.cc
conversions.hh
olli
/
r_frag_quality.cc
angle.functions.hh
olli
/
r_local_rdc.cc
angle.functions.hh
olli
/
r_local_rdc.cc
conversions.hh
olli
/
r_parse_foldtree.cc
angle.functions.hh
olli
/
r_parse_foldtree.cc
conversions.hh
olli
/
r_parse_foldtree.cc
numeric.functions.hh
kale
/
examples
/
random_seed.cc
random
/
random.hh
will
/
old
/
rblinker.cc
random
/
random.hh
will
/
old
/
rblinker.cc
xyz.functions.hh
will
/
old
/
rblinker.cc
xyz.io.hh
will
/
old
/
rblinker2.cc
random
/
random.hh
will
/
old
/
rblinker2.cc
xyz.functions.hh
will
/
old
/
rblinker2.cc
xyz.io.hh
will
/
old
/
rblinker2_overlay_bound.cc
random
/
random.hh
will
/
old
/
rblinker2_overlay_bound.cc
xyz.functions.hh
will
/
old
/
rblinker2_overlay_bound.cc
xyz.io.hh
will
/
old
/
rblinker2_test.cc
random
/
random.hh
will
/
old
/
rblinker2_test.cc
xyz.functions.hh
will
/
old
/
rblinker2_test.cc
xyz.io.hh
ian
/
redo_rms_atomtree_diffs.cc
conversions.hh
ian
/
redo_rms_atomtree_diffs.cc
random
/
random_permutation.hh
ian
/
redo_rms_atomtree_diffs.cc
xyzVector.io.hh
kale
/
kic_refactor
/
original
/
refine_LoopMover_KIC.cc
random
/
random.hh
neil
/
relax_building_block.cc
random
/
random.hh
mike
/
relax_viewer.cc
random
/
random.hh
mike
/
relax_viewer.cc
xyzVector.hh
brunette
/
repeat_dock.cc
xyz.functions.hh
brunette
/
repeat_dock.cc
xyzTransform.hh
brunette
/
repeat_dock.cc
xyzVector.hh
dwkulp
/
reportFragments.cc
random
/
random.hh
will
/
old
/
rescore_i213.cc
random
/
random.hh
delucasl
/
roc_optimizer.cc
roc_curve.hh
delucasl
/
roc_test.cc
roc_curve.hh
doug
/
rotamer_prediction_benchmark.cc
angle.functions.hh
will
/
old
/
rsd_canonical_units.cc
conversions.hh
will
/
old
/
rsd_canonical_units.cc
random
/
random.hh
will
/
old
/
rsd_canonical_units.cc
model_quality
/
rms.hh
will
/
old
/
rsd_canonical_units.cc
xyz.functions.hh
will
/
old
/
rsd_canonical_units.cc
xyz.io.hh
ralford
/
archive
/
sample_tilt_protocol.cc
xyzVector.hh
hpark
/
sampling_movers.cc
random
/
random.hh
hpark
/
sampling_movers.hh
random
/
random.hh
liz
/
sasa.cc
random
/
random.hh
liz
/
sasa.cc
xyzVector.hh
will
/
old
/
sasa_test.cc
random
/
random.hh
will
/
old
/
sasa_test.cc
xyz.functions.hh
liz
/
score_ddgs.cc
random
/
random.hh
dekim
/
score_nonlocal_frags.cc
model_quality
/
rms.hh
will
/
old
/
score_pdbs.cc
random
/
random.hh
will
/
old
/
score_pdbs.cc
xyzVector.hh
mike
/
sctrials.cc
random
/
random.hh
bazzoli
/
sel_hbonds.cc
xyzVector.hh
james
/
seqdb_stats.cc
random
/
random.hh
will
/
old
/
sf4_hash.cc
random
/
random.hh
will
/
old
/
sf4_hash.cc
model_quality
/
rms.hh
will
/
old
/
sf4_hash.cc
xyz.functions.hh
will
/
old
/
sf4_hash.cc
xyz.io.hh
will
/
old
/
sicdock.cc
conversions.hh
will
/
old
/
sicdock.cc
random
/
random.hh
will
/
old
/
sicdock.cc
model_quality
/
rms.hh
will
/
old
/
sicdock.cc
xyz.functions.hh
will
/
old
/
sicdock.cc
xyz.io.hh
will
/
old
/
sicdock.cc
xyzTransform.hh
will
/
old
/
sicdock.cc
xyzVector.hh
kale
/
detailed_balance
/
sidechain_tests.cc
random
/
random.hh
mike
/
silent2cst.cc
xyzVector.hh
james
/
silent_cst_quality.cc
xyzVector.hh
james
/
simple_cm.cc
random
/
random.hh
phil
/
simple_dna_regression_test.cc
random
/
random.hh
phil
/
simple_dna_regression_test.cc
xyz.functions.hh
phil
/
simple_dna_regression_test.cc
xyzMatrix.hh
phil
/
simple_dna_regression_test.cc
xyzVector.hh
kenjung
/
sixdtreeTEST.cc
geometry
/
hashing
/
SixDHasher.hh
will
/
old
/
smhybrid.cc
random
/
random.hh
will
/
old
/
smhybrid.cc
model_quality
/
rms.hh
will
/
old
/
smhybrid.cc
xyz.functions.hh
will
/
old
/
smhybrid.cc
xyz.io.hh
aginsparg
/
space_fill_analysis.cc
geometry
/
hashing
/
xyzStripeHash.fwd.hh
aginsparg
/
space_fill_analysis.cc
geometry
/
hashing
/
xyzStripeHash.hh
aginsparg
/
space_fill_analysis.cc
xyzVector.hh
frank
/
spacegroup.hh
xyz.functions.hh
frank
/
spacegroup.hh
xyzMatrix.hh
frank
/
spacegroup.hh
xyzVector.hh
james
/
sparta_superdev.cc
xyzVector.hh
dgront
/
SpecificJumpSetup.cc
random
/
random.hh
will
/
old
/
sphere_hierarchy.cc
conversions.hh
will
/
old
/
sphere_hierarchy.cc
random
/
random.hh
will
/
old
/
sphere_hierarchy.cc
model_quality
/
rms.hh
will
/
old
/
sphere_hierarchy.cc
xyz.functions.hh
will
/
old
/
sphere_hierarchy.cc
xyz.io.hh
will
/
old
/
SphereSample.hh
xyzVector.hh
will
/
old
/
spiro.cc
random
/
random.hh
johnk
/
srirupa_phosphoArg_build_rotamers.cc
xyzVector.hh
rhiju
/
legacy
/
stepwise_test.cc
angle.functions.hh
rhiju
/
legacy
/
stepwise_test.cc
conversions.hh
rhiju
/
legacy
/
stepwise_test.cc
random
/
random.hh
rhiju
/
legacy
/
stepwise_test.cc
xyz.functions.hh
rhiju
/
legacy
/
stepwise_test.cc
xyzVector.hh
frankdt
/
steric_fusion_scan.cc
HomogeneousTransform.hh
frankdt
/
steric_fusion_scan.cc
random
/
random.hh
james
/
super.cc
xyzVector.hh
olungu
/
Superimpose_Pdbs.cc
xyzVector.hh
fcchou
/
swa_rna_analytical_closure.cc
conversions.hh
fcchou
/
swa_rna_analytical_closure.cc
xyzVector.hh
javierbq
/
swap_elements.cc
xyz.functions.hh
javierbq
/
swap_elements.cc
xyzMatrix.hh
javierbq
/
swap_elements.cc
xyzVector.hh
andrew
/
sweep_respair_energies.cc
constants.hh
andrew
/
sweep_respair_energies.cc
random
/
random.hh
neil
/
symdock_enum.cc
constants.hh
neil
/
symdock_enum.cc
xyz.functions.hh
neil
/
symdock_enum.cc
xyz.io.hh
will
/
old
/
symdock_enum_3_1.cc
constants.hh
neil
/
symdock_enum_3_1.cc
constants.hh
will
/
old
/
symdock_enum_3_1.cc
xyz.functions.hh
neil
/
symdock_enum_3_1.cc
xyz.functions.hh
neil
/
symdock_enum_3_1.cc
xyz.io.hh
will
/
old
/
symdock_enum_3_1.cc
xyz.io.hh
will
/
old
/
symdock_enum_3_1.cc
xyzTransform.hh
will
/
old
/
symdock_hybrid.cc
random
/
random.hh
will
/
old
/
symdock_hybrid.cc
xyz.functions.hh
will
/
old
/
symdock_hybrid.cc
xyz.io.hh
will
/
old
/
symdock_hybrid_cc3.cc
random
/
random.hh
will
/
old
/
symdock_hybrid_cc3.cc
xyz.functions.hh
will
/
old
/
symdock_hybrid_cc3.cc
xyz.io.hh
kenjung
/
symfragrm.cc
geometry
/
hashing
/
SixDHasher.hh
will
/
old
/
tcdock.cc
constants.hh
will
/
old
/
tcdock.cc
xyz.functions.hh
will
/
old
/
tcdock.cc
xyz.io.hh
will
/
old
/
tcdock.cc
xyzTransform.hh
kevin
/
template.cc
conversions.hh
kevin
/
template.cc
xyzVector.hh
phil
/
test1.cc
conversions.hh
phil
/
test1.cc
random
/
random.hh
hpark
/
test_bbmc.cc
MultiDimensionalHistogram.hh
hpark
/
test_bbmc.cc
random
/
random.hh
hpark
/
test_bbmc.org.cc
MultiDimensionalHistogram.hh
hpark
/
test_bbmc.org.cc
random
/
random.hh
barak
/
test_frags.barak.cc
random
/
random.hh
will
/
old
/
test_ikrs.cc
kinematic_closure
/
bridgeObjects.hh
will
/
old
/
test_ikrs.cc
NumericTraits.hh
will
/
old
/
test_ikrs.cc
xyz.functions.hh
will
/
old
/
test_ikrs.cc
xyz.io.hh
will
/
old
/
test_ikrs2.cc
kinematic_closure
/
bridgeObjects.hh
will
/
old
/
test_ikrs2.cc
kinematic_closure
/
kinematic_closure_helpers.hh
will
/
old
/
test_ikrs2.cc
NumericTraits.hh
will
/
old
/
test_ikrs2.cc
xyz.functions.hh
will
/
old
/
test_ikrs2.cc
xyz.io.hh
will
/
old
/
test_ikrs_flymake.cc
kinematic_closure
/
bridgeObjects.hh
will
/
old
/
test_ikrs_flymake.cc
kinematic_closure
/
kinematic_closure_helpers.hh
will
/
old
/
test_ikrs_flymake.cc
xyz.functions.hh
will
/
old
/
test_ikrs_flymake.cc
xyz.io.hh
will
/
old
/
test_kc.cc
kinematic_closure
/
bridgeObjects.hh
will
/
old
/
test_kc.cc
conversions.hh
will
/
old
/
test_kc.cc
kinematic_closure
/
kinematic_closure_helpers.hh
will
/
old
/
test_kc.cc
random
/
random.hh
will
/
old
/
test_leerichards.cc
random
/
random.hh
will
/
old
/
test_leerichards.cc
xyz.functions.hh
will
/
old
/
test_leerichards.cc
xyz.io.hh
hpark
/
test_LH.cc
random
/
random.hh
will
/
old
/
test_loop_hash.cc
HomogeneousTransform.hh
will
/
old
/
test_loop_hash.cc
xyz.functions.hh
will
/
old
/
test_loop_hash.cc
xyz.io.hh
kkappel
/
test_rna_protein.cc
random
/
random.hh
will
/
old
/
test_rose.cc
random
/
random.hh
will
/
old
/
test_rose.cc
xyzTransform.hh
hpark
/
test_sampling.cc
random
/
random.hh
mike
/
testderiv.cc
random
/
random.hh
mike
/
testderiv.cc
xyzVector.hh
barak
/
thread_bb.cc
random
/
random.hh
james
/
thread_fast.cc
model_quality
/
rms.hh
barak
/
thread_sidechains.cc
random
/
random.hh
ralford
/
archive
/
transform_into_mem.cc
random
/
random.hh
ralford
/
archive
/
translate_membrane_pose.cc
random
/
random.hh
ralford
/
archive
/
translate_view_membrane.cc
random
/
random.hh
rhiju
/
legacy
/
TRIAL_protein_helix_assemble.cc
angle.functions.hh
rhiju
/
legacy
/
TRIAL_protein_helix_assemble.cc
conversions.hh
rhiju
/
legacy
/
TRIAL_protein_helix_assemble.cc
random
/
random.hh
rhiju
/
legacy
/
TRIAL_protein_helix_assemble.cc
xyz.functions.hh
rhiju
/
legacy
/
TRIAL_protein_helix_assemble.cc
xyzVector.hh
awatkins
/
triazolamer_creator.cc
random
/
random.hh
rhiju
/
legacy
/
turner_rules_test.cc
angle.functions.hh
rhiju
/
legacy
/
turner_rules_test.cc
conversions.hh
rhiju
/
legacy
/
turner_rules_test.cc
xyz.functions.hh
rhiju
/
legacy
/
turner_rules_test.cc
xyzMatrix.hh
rhiju
/
legacy
/
turner_rules_test.cc
xyzVector.hh
rhiju
/
legacy
/
turner_rules_test_WORKS.cc
angle.functions.hh
rhiju
/
legacy
/
turner_rules_test_WORKS.cc
conversions.hh
rhiju
/
legacy
/
turner_rules_test_WORKS.cc
xyz.functions.hh
rhiju
/
legacy
/
turner_rules_test_WORKS.cc
xyzMatrix.hh
rhiju
/
legacy
/
turner_rules_test_WORKS.cc
xyzVector.hh
fcchou
/
turner_test_double_helix.cc
angle.functions.hh
fcchou
/
turner_test_double_helix.cc
conversions.hh
fcchou
/
turner_test_double_helix.cc
random
/
random.hh
fcchou
/
turner_test_double_helix.cc
xyz.functions.hh
fcchou
/
turner_test_double_helix.cc
xyzMatrix.hh
fcchou
/
turner_test_double_helix.cc
xyzVector.hh
fcchou
/
turner_test_one_chain.cc
angle.functions.hh
fcchou
/
turner_test_one_chain.cc
conversions.hh
fcchou
/
turner_test_one_chain.cc
random
/
random.hh
fcchou
/
turner_test_one_chain.cc
xyz.functions.hh
fcchou
/
turner_test_one_chain.cc
xyzMatrix.hh
fcchou
/
turner_test_one_chain.cc
xyzVector.hh
fcchou
/
turner_two_chain.cc
angle.functions.hh
fcchou
/
turner_two_chain.cc
conversions.hh
fcchou
/
turner_two_chain.cc
random
/
random.hh
fcchou
/
turner_two_chain.cc
xyz.functions.hh
fcchou
/
turner_two_chain.cc
xyzMatrix.hh
fcchou
/
turner_two_chain.cc
xyzVector.hh
jcorn
/
TwoChainInterface.cc
random
/
random.hh
jcorn
/
TwoChainTenANeighbors.cc
random
/
random.hh
brunette
/
unalignedEvaluate.cc
xyzVector.hh
jim
/
use_asn_motifs.cc
random
/
random.hh
jim
/
use_asn_motifs.cc
xyzVector.hh
kale
/
examples
/
vector_math.cc
MathVector.hh
kale
/
examples
/
vector_math.cc
MathVector_operations.hh
kale
/
examples
/
vector_math.cc
xyzVector.hh
ralford
/
archive
/
framework_devel
/
visualize_membrane.cc
random
/
random.hh
ralford
/
archive
/
framework_devel
/
visualize_membrane.cc
xyz.functions.hh
ralford
/
archive
/
framework_devel
/
visualize_membrane.cc
xyzVector.hh
will
/
old
/
ward_design.cc
random
/
random.hh
will
/
old
/
ward_design.cc
model_quality
/
rms.hh
will
/
old
/
ward_design.cc
xyz.functions.hh
will
/
old
/
ward_design.cc
xyz.io.hh
kevin
/
wat_distances.cc
xyzVector.hh
will
/
old
/
will_mutalyze.cc
random
/
random.hh
will
/
old
/
willmatch_2d6_bhe.cc
xyz.functions.hh
will
/
old
/
willmatch_2d6_bhe.cc
xyz.io.hh
will
/
old
/
willmatch_chorismate.cc
xyz.functions.hh
will
/
old
/
willmatch_chorismate.cc
xyz.io.hh
will
/
old
/
willmatch_d6_bpy.cc
xyz.functions.hh
will
/
old
/
willmatch_d6_bpy.cc
xyz.io.hh
bder
/
xtal_water_bunsat.cc
xyzVector.hh
kale
/
examples
/
xyz_from_pose.cc
xyzVector.hh
will
/
old
/
xyzStripeHash_dump.cc
xyz.io.hh
will
/
old
/
xyzStripeHash_dump.cc
geometry
/
hashing
/
xyzStripeHashWithMeta.hh
will
/
old
/
xyzStripeHash_dump.cc
xyzVector.hh
will
/
old
/
xyzStripeHash_test.cc
random
/
random.hh
will
/
old
/
xyzStripeHash_test.cc
xyz.io.hh
will
/
old
/
xyzStripeHash_test.cc
geometry
/
hashing
/
xyzStripeHash.hh
will
/
old
/
xyzStripeHash_test.cc
xyzVector.hh
will
/
old
/
yeates_align.cc
random
/
random.hh
will
/
old
/
yeates_align.cc
xyz.functions.hh
will
/
old
/
yeates_align.cc
xyz.io.hh
phil
/
zf_relax.cc
random
/
random.hh
chu
/
zinc_stat.cc
conversions.hh
chu
/
zinc_stat.cc
xyz.functions.hh
chu
/
zinc_stat.cc
xyzVector.hh
bder
/
ZincMinimize.cc
xyz.io.hh
bder
/
ZincMinimize.cc
xyzVector.hh
bder
/
ZincSiteEvaluator.cc
conversions.hh
bder
/
ZincSiteEvaluator.cc
xyz.functions.hh
bder
/
ZincSiteEvaluator.cc
xyzVector.hh
ptconway
/
elec_dens_rot_recov.cc
xyzVector.hh
ptconway
/
elec_dens_rot_recov.cc
random
/
random.hh
will
/
old
/
query_lang
/
metric.cc
random
/
random.hh
ragul
/
get_pharmacophore_without_bound_rna.cc
xyzVector.hh
ragul
/
get_pharmacophore_without_bound_rna.cc
xyz.functions.hh
ragul
/
ragul_darc_minimize.cc
model_quality
/
rms.hh
ragul
/
ragul_darc_optimize_weights.cc
conversions.hh
ragul
/
ragul_darc_optimize_weights.cc
xyz.functions.hh
ragul
/
ragul_darc_optimize_weights.cc
xyzMatrix.hh
rayyrw
/
closability_score.hh
HomogeneousTransform.hh
rayyrw
/
FragMonteCarlo.hh
random
/
random.hh
rayyrw
/
min_pack_min.hh
xyzMatrix.hh
rayyrw
/
min_pack_min.hh
xyzVector.hh
rayyrw
/
min_pack_min.hh
xyzVector.io.hh
rayyrw
/
place_fragments_into_density.cc
xyzMatrix.hh
rayyrw
/
place_fragments_into_density.cc
xyzVector.hh
rayyrw
/
place_fragments_into_density.cc
xyzVector.io.hh
reggiano
/
density_res_zscores.cc
xyzMatrix.hh
reggiano
/
density_res_zscores.cc
xyzVector.hh
reggiano
/
density_res_zscores.cc
xyzVector.io.hh
reggiano
/
density_res_zscores.cc
random
/
random.hh
rhiju
/
benzene_test.cc
xyzVector.hh
rhiju
/
benzene_test.cc
conversions.hh
rhiju
/
block_stack_test.cc
xyz.functions.hh
rhiju
/
check_cubic_conv.cc
MathNTensor.hh
rhiju
/
check_cubic_conv.cc
interpolation
/
polycubic_catmull_rom.hh
rhiju
/
check_cubic_conv.cc
constants.hh
rhiju
/
coarse_rna_test.cc
kinematic_closure
/
bridgeObjects.hh
rhiju
/
coarse_rna_test.cc
kinematic_closure
/
kinematic_closure_helpers.hh
rhiju
/
coarse_rna_test.cc
xyzVector.hh
rhiju
/
coarse_rna_test.cc
xyzMatrix.hh
rhiju
/
coarse_rna_test.cc
xyz.functions.hh
rhiju
/
coarse_rna_test.cc
random
/
random.hh
rhiju
/
coarse_rna_test.cc
conversions.hh
rhiju
/
easy_target_test.cc
xyzVector.hh
rhiju
/
easy_target_test.cc
conversions.hh
rhiju
/
entropy_test.cc
xyzVector.hh
rhiju
/
entropy_test.cc
conversions.hh
rhiju
/
entropy_test.cc
random
/
random.hh
rhiju
/
entropy_test.cc
xyz.functions.hh
rhiju
/
entropy_test.cc
angle.functions.hh
rhiju
/
gcc185_test.cc
xyzVector.hh
rhiju
/
gcc185_test.cc
random
/
random.hh
rhiju
/
gcc185_test.cc
conversions.hh
rhiju
/
get_info.cc
xyzVector.hh
rhiju
/
loop_closure_test.cc
kinematic_closure
/
bridgeObjects.hh
rhiju
/
loop_closure_test.cc
kinematic_closure
/
kinematic_closure_helpers.hh
rhiju
/
loop_closure_test.cc
xyzVector.hh
rhiju
/
loop_closure_test.cc
conversions.hh
rhiju
/
loop_closure_test.cc
random
/
random.hh
rhiju
/
loop_closure_test.cc
xyz.functions.hh
rhiju
/
loop_closure_test.cc
angle.functions.hh
rhiju
/
mg_hires_pdbstats.cc
xyzVector.hh
rhiju
/
mg_hires_pdbstats.cc
xyzMatrix.hh
rhiju
/
mg_hires_pdbstats.cc
xyz.functions.hh
rhiju
/
mg_hires_pdbstats.cc
conversions.hh
rhiju
/
mg_lores_pdbstats.cc
xyzVector.hh
rhiju
/
mg_lores_pdbstats.cc
xyzMatrix.hh
rhiju
/
mg_lores_pdbstats.cc
conversions.hh
rhiju
/
mg_lores_pdbstats.cc
xyz.functions.hh
rhiju
/
morph_pdbs.cc
angle.functions.hh
rhiju
/
pack_phosphates.cc
xyz.functions.hh
rhiju
/
pdbstats_rnahelix.cc
xyzVector.hh
rhiju
/
pdbstats_rnahelix.cc
xyzMatrix.hh
rhiju
/
pdbstats_rnahelix.cc
conversions.hh
rhiju
/
pdbstats_rnahelix.cc
xyz.functions.hh
rhiju
/
pdbstats_test.cc
xyzVector.hh
rhiju
/
pdbstats_test.cc
xyzMatrix.hh
rhiju
/
pdbstats_test.cc
conversions.hh
rhiju
/
pdbstats_test.cc
xyz.functions.hh
rhiju
/
polar_pdbstats.cc
xyzVector.hh
rhiju
/
polar_pdbstats.cc
xyzMatrix.hh
rhiju
/
polar_pdbstats.cc
conversions.hh
rhiju
/
polar_pdbstats.cc
xyz.functions.hh
rhiju
/
protein_helix_assemble.cc
xyzVector.hh
rhiju
/
protein_helix_assemble.cc
conversions.hh
rhiju
/
protein_helix_assemble.cc
random
/
random.hh
rhiju
/
protein_helix_assemble.cc
xyz.functions.hh
rhiju
/
protein_helix_assemble.cc
angle.functions.hh
rhiju
/
rb_entropy.cc
xyzVector.hh
rhiju
/
rb_entropy.cc
random
/
random_xyz.hh
rhiju
/
rb_entropy.cc
random
/
random.hh
rhiju
/
rb_entropy.cc
constants.hh
rhiju
/
read_tensor.cc
MathNTensor_io.hh
rhiju
/
read_tensor.cc
interpolation
/
spline
/
PolycubicSpline.hh
rhiju
/
read_tensor.cc
interpolation
/
spline
/
PolycubicSpline.tmpl.hh
rhiju
/
read_tensor.cc
interpolation
/
interpolation.hh
rhiju
/
read_tensor.cc
xyzVector.io.hh
rhiju
/
rna_assemble_test.cc
xyzVector.hh
rhiju
/
rna_assemble_test.cc
conversions.hh
rhiju
/
rna_protein_test.cc
xyzVector.hh
rhiju
/
rna_protein_test.cc
random
/
random.hh
rhiju
/
rna_protein_test.cc
NumericTraits.hh
rhiju
/
rna_test.cc
xyzVector.hh
rhiju
/
rna_test.cc
conversions.hh
rhiju
/
rna_test.cc
xyz.functions.hh
rhiju
/
rna_test.cc
angle.functions.hh
rhiju
/
stepwise_centroid_test.cc
xyzVector.hh
rhiju
/
stepwise_centroid_test.cc
conversions.hh
rhiju
/
stepwise_centroid_test.cc
random
/
random.hh
rhiju
/
stepwise_centroid_test.cc
xyz.functions.hh
rhiju
/
stepwise_helix_test.cc
xyzVector.hh
rhiju
/
stepwise_helix_test.cc
conversions.hh
rhiju
/
stepwise_helix_test.cc
xyz.functions.hh
rhiju
/
stepwise_loop_test.cc
kinematic_closure
/
bridgeObjects.hh
rhiju
/
stepwise_loop_test.cc
kinematic_closure
/
kinematic_closure_helpers.hh
rhiju
/
stepwise_loop_test.cc
xyzVector.hh
rhiju
/
stepwise_loop_test.cc
conversions.hh
rhiju
/
stepwise_loop_test.cc
random
/
random.hh
rhiju
/
stepwise_loop_test.cc
xyz.functions.hh
rhiju
/
stepwise_loop_test.cc
angle.functions.hh
rhiju
/
stepwise_template_test.cc
xyzVector.hh
rhiju
/
stepwise_template_test.cc
conversions.hh
rhiju
/
stepwise_template_test.cc
random
/
random.hh
rhiju
/
stepwise_template_test.cc
xyz.functions.hh
rhiju
/
stepwise_template_test.cc
angle.functions.hh
rjha
/
MetalInterface.hh
xyzVector.hh
rjha
/
MetalInterfaceStructureCreator.cc
xyzVector.hh
rjha
/
ZincMatchFilter.cc
xyzVector.hh
rjha
/
ZincMatchFilter.cc
conversions.hh
rjha
/
ZincMatchFilter.cc
xyz.functions.hh
rmoretti
/
atom_tree_check.cc
xyzVector.io.hh
rmoretti
/
bootstrap_bcl_types.cc
util.hh
rmoretti
/
extract_atomtree_diffs_jd1.cc
random
/
random_permutation.hh
rmoretti
/
ligand_dock_jd1.cc
random
/
random.hh
rmoretti
/
ligand_dock_jd1.cc
random
/
random_permutation.hh
ronj
/
hydrophobic_patch_stats_calculator.cc
xyzVector.hh
ronj
/
hydrophobic_patch_stats_calculator.cc
constants.hh
ronj
/
rss_energy_calculator.cc
random
/
random.hh
rpache
/
generate_matcher_constraints.cc
xyz.functions.hh
rpache
/
generate_matcher_constraints.cc
constants.hh
rvernon
/
calc_pair_stats.cc
random
/
random.hh
rvernon
/
compute_disulfide_matching_score.cc
constants.hh
rvernon
/
compute_disulfide_matching_score.cc
random
/
random.hh
rvernon
/
compute_disulfide_matching_score.cc
xyzMatrix.hh
rvernon
/
compute_disulfide_matching_score.cc
xyzMatrix.fwd.hh
rvernon
/
compute_disulfide_matching_score.cc
xyz.functions.hh
rvernon
/
create_disulfide_alldata.cc
constants.hh
rvernon
/
create_disulfide_alldata.cc
random
/
random.hh
rvernon
/
create_disulfide_alldata.cc
xyzMatrix.hh
rvernon
/
create_disulfide_alldata.cc
xyzMatrix.fwd.hh
rvernon
/
create_disulfide_alldata.cc
xyz.functions.hh
rvernon
/
create_disulfide_angle_statistics.cc
constants.hh
rvernon
/
create_disulfide_angle_statistics.cc
random
/
random.hh
rvernon
/
create_disulfide_angle_statistics.cc
xyzMatrix.hh
rvernon
/
create_disulfide_angle_statistics.cc
xyzMatrix.fwd.hh
rvernon
/
create_disulfide_angle_statistics.cc
xyz.functions.hh
rvernon
/
create_disulfide_database.cc
random
/
random.hh
rvernon
/
create_disulfide_database.cc
xyzMatrix.hh
rvernon
/
create_disulfide_database.cc
xyzMatrix.fwd.hh
rvernon
/
create_disulfide_database.cc
xyz.functions.hh
rvernon
/
create_disulfide_distance_statistics.cc
constants.hh
rvernon
/
create_disulfide_distance_statistics.cc
random
/
random.hh
rvernon
/
create_disulfide_distance_statistics.cc
xyzMatrix.hh
rvernon
/
create_disulfide_distance_statistics.cc
xyzMatrix.fwd.hh
rvernon
/
create_disulfide_distance_statistics.cc
xyz.functions.hh
rvernon
/
create_disulfide_fa_angle_statistics.cc
constants.hh
rvernon
/
create_disulfide_fa_angle_statistics.cc
random
/
random.hh
rvernon
/
create_disulfide_fa_angle_statistics.cc
xyzMatrix.hh
rvernon
/
create_disulfide_fa_angle_statistics.cc
xyzMatrix.fwd.hh
rvernon
/
create_disulfide_fa_angle_statistics.cc
xyz.functions.hh
rvernon
/
pcs_distances_for_fragpicker.cc
constants.hh
rvernon
/
pcs_distances_for_fragpicker.cc
random
/
random.hh
rvernon
/
pcs_distances_for_fragpicker.cc
xyzMatrix.hh
rvernon
/
pcs_distances_for_fragpicker.cc
xyzMatrix.fwd.hh
rvernon
/
pcs_distances_for_fragpicker.cc
xyz.functions.hh
rvernon
/
pcs_fragments_to_distances.cc
constants.hh
rvernon
/
pcs_fragments_to_distances.cc
random
/
random.hh
rvernon
/
pcs_fragments_to_distances.cc
xyzMatrix.hh
rvernon
/
pcs_fragments_to_distances.cc
xyzMatrix.fwd.hh
rvernon
/
pcs_fragments_to_distances.cc
xyz.functions.hh
rvernon
/
pcs_fragments_to_distances2.cc
constants.hh
rvernon
/
pcs_fragments_to_distances2.cc
random
/
random.hh
rvernon
/
pcs_fragments_to_distances2.cc
xyzMatrix.hh
rvernon
/
pcs_fragments_to_distances2.cc
xyzMatrix.fwd.hh
rvernon
/
pcs_fragments_to_distances2.cc
xyz.functions.hh
rvernon
/
pcs_fragments_to_distances_wRMS.cc
constants.hh
rvernon
/
pcs_fragments_to_distances_wRMS.cc
random
/
random.hh
rvernon
/
pcs_fragments_to_distances_wRMS.cc
xyzMatrix.hh
rvernon
/
pcs_fragments_to_distances_wRMS.cc
xyzMatrix.fwd.hh
rvernon
/
pcs_fragments_to_distances_wRMS.cc
xyz.functions.hh
rvernon
/
pcs_score_individual_residues.cc
random
/
random.hh
rvernon
/
pcs_score_individual_residues.cc
xyzMatrix.hh
rvernon
/
pcs_score_individual_residues.cc
xyzMatrix.fwd.hh
rvernon
/
pcs_score_individual_residues.cc
xyz.functions.hh
rvernon
/
pcs_score_residues.cc
random
/
random.hh
rvernon
/
pcs_score_residues.cc
xyzMatrix.hh
rvernon
/
pcs_score_residues.cc
xyzMatrix.fwd.hh
rvernon
/
pcs_score_residues.cc
xyz.functions.hh
rvernon
/
pcs_score_select.cc
random
/
random.hh
rvernon
/
pcs_score_select.cc
xyzMatrix.hh
rvernon
/
pcs_score_select.cc
xyzMatrix.fwd.hh
rvernon
/
pcs_score_select.cc
xyz.functions.hh
rvernon
/
pcs_score_select_helices.cc
random
/
random.hh
rvernon
/
pcs_score_select_helices.cc
xyzMatrix.hh
rvernon
/
pcs_score_select_helices.cc
xyzMatrix.fwd.hh
rvernon
/
pcs_score_select_helices.cc
xyz.functions.hh
rvernon
/
score_sidechain_sasa.cc
random
/
random.hh
ralford
/
archive
/
framework_devel
/
scoring
/
mp_scoring_feature_reporter.cc
xyzVector.hh
ralford
/
archive
/
framework_devel
/
scoring
/
mp_sfxn_integration.cc
xyzVector.hh
sergey
/
GA.cc
random
/
random.hh
sergey
/
GA.cc
NumericTraits.hh
sergey
/
OptionsTest.cc
random
/
random.hh
sergey
/
PDBTest.cc
xyzVector.hh
sergey
/
TracerTest.cc
random
/
random.hh
shilei
/
docking_inputpatchdock_mpi.cc
xyzMatrix.hh
shilei
/
docking_inputpatchdock_mpi.cc
angle.functions.hh
shilei
/
docking_inputpatchdock_mpi.cc
random
/
random.hh
shilei
/
docking_parallel.cc
xyzMatrix.hh
shilei
/
docking_parallel.cc
angle.functions.hh
shilei
/
docking_parallel.cc
random
/
random.hh
shilei
/
generate_hbond_geometry.cc
constants.hh
shilei
/
generate_hbond_geometry.cc
conversions.hh
shilei
/
match_disulfide_to_scaffold.cc
xyz.functions.hh
shilei
/
match_disulfide_to_scaffold.cc
xyz.io.hh
shilei
/
match_disulfide_to_scaffold.cc
xyzVector.hh
shilei
/
read_pose_jump_orientation_repack.cc
xyzMatrix.hh
shirst
/
TestTopologySampler.cc
random
/
random.hh
smlewis
/
UBQ_UBQ_E2.cc
conversions.hh
smlewis
/
UBQ_UBQ_E2.cc
xyz.io.hh
sraman
/
RBSegMove_test.cc
random
/
random.hh
sraman
/
RBSegMove_test.cc
random
/
random_permutation.hh
sraman
/
RBSegMove_test_viewer.cc
random
/
random.hh
sraman
/
RBSegMove_test_viewer.cc
random
/
random_permutation.hh
sthyme
/
ligand_motifs.cc
xyzVector.hh
sthyme
/
ligand_motifs.cc
random
/
random.hh
jadolfbr
/
testing
/
test_grafting.cc
random
/
random.hh
tjacobs
/
BundleDumper.cc
xyzVector.hh
tjacobs
/
BundleDumper.cc
model_quality
/
rms.hh
tjacobs
/
BundlePairRmsdCalculator.cc
xyzVector.hh
tjacobs
/
BundlePairRmsdCalculator.cc
model_quality
/
rms.hh
tjacobs
/
BundlePairRmsdCalculatorGPU.cc
xyzVector.hh
tjacobs
/
BundlePairRmsdCalculatorGPU.cc
model_quality
/
rms.hh
tjacobs
/
CompareBundleToNative.cc
xyzVector.hh
tjacobs
/
CompareBundleToNative.cc
model_quality
/
rms.hh
tjacobs
/
InterfaceStrandFinderMover.cc
xyzVector.hh
tjacobs
/
model_dumper.cc
random
/
random.hh
tjacobs
/
NodePairRmsdCalculator.cc
xyzVector.hh
tjacobs
/
NodePairRmsdCalculator.cc
model_quality
/
rms.hh
tjacobs
/
PrepareGraphNodes.cc
xyzVector.hh
tjacobs
/
PrepareGraphNodes.cc
model_quality
/
rms.hh
tjacobs
/
SmotifPairRmsdCalculatorGPU.CC
xyzVector.hh
tjacobs
/
SmotifPairRmsdCalculatorGPU.CC
model_quality
/
rms.hh
tseng
/
tseng_minimize.cc
random
/
random.hh
jackmaguire
/
vlmmlr_packer
/
FixbbSimAnnealer.cc
random
/
random.hh
vmullig
/
bettercluster.cc
model_quality
/
rms.hh
vmullig
/
bettercluster.cc
EulerAngles.hh
vmullig
/
bettercluster.cc
PCA.hh
vmullig
/
cycpep_analysis.cc
angle.functions.hh
vmullig
/
design_cycpeptide_MPI.cc
xyz.functions.hh
vmullig
/
design_cycpeptide_MPI.cc
random
/
random.hh
vmullig
/
design_cycpeptide_MPI.cc
xyzVector.hh
vmullig
/
design_truecycpeptide_fromstub.cc
model_quality
/
rms.hh
vmullig
/
design_truecycpeptide_fromstub.cc
random
/
random.hh
vmullig
/
fit_helixparams.cc
xyz.functions.hh
vmullig
/
fit_helixparams.cc
conversions.hh
vmullig
/
fit_helixparams.cc
crick_equations
/
HelixParams.hh
vmullig
/
make_betahelicalbundle.cc
random
/
random.hh
vmullig
/
make_betahelicalbundle.cc
random
/
uniform.hh
vmullig
/
make_betahelicalbundle.cc
constants.hh
vmullig
/
make_helicalbundle.cc
random
/
random.hh
vmullig
/
make_helicalbundle.cc
random
/
uniform.hh
vmullig
/
make_ideal_betapeptide.cc
random
/
random.hh
vmullig
/
make_ideal_betapeptide.cc
random
/
uniform.hh
vmullig
/
make_truecyclicpeptide.cc
xyz.functions.hh
vmullig
/
make_truecyclicpeptide.cc
xyz.io.hh
vmullig
/
make_truecyclicpeptide.cc
random
/
random.hh
vmullig
/
make_truecyclicpeptide.cc
random
/
uniform.hh
vmullig
/
PCA_internal_test.cc
PCA.hh
vmullig
/
PCA_visualizer.cc
EulerAngles.hh
vmullig
/
symmetrize_3d_ramamap.cc
angle.functions.hh
vmullig
/
symmetrize_new_ramamap.cc
angle.functions.hh
vmullig
/
symmetrize_old_ramamap.cc
angle.functions.hh
vmullig
/
test_cyclic_rama.cc
xyz.functions.hh
vmullig
/
test_cyclic_rama.cc
xyz.io.hh
vmullig
/
test_cyclic_rama.cc
random
/
random.hh
vmullig
/
test_cyclic_rama.cc
random
/
uniform.hh
vmullig
/
test_D_scoring.cc
xyz.functions.hh
vmullig
/
test_D_scoring.cc
xyz.io.hh
vmullig
/
test_D_scoring.cc
random
/
random.hh
vmullig
/
test_D_scoring.cc
random
/
uniform.hh
vmullig
/
test_KIC_betapeptide.cc
random
/
random.hh
vmullig
/
test_KIC_betapeptide.cc
random
/
uniform.hh
vmullig
/
test_makebundle_mover.cc
constants.hh
vmullig
/
test_metalloproteins.cc
xyz.functions.hh
vmullig
/
test_metalloproteins.cc
xyz.io.hh
vmullig
/
test_metalloproteins.cc
random
/
random.hh
vmullig
/
test_metalloproteins.cc
random
/
uniform.hh
vmullig
/
test_sidechainKIC.cc
xyz.functions.hh
vmullig
/
test_sidechainKIC.cc
xyz.io.hh
vmullig
/
test_sidechainKIC.cc
random
/
random.hh
vmullig
/
test_sidechainKIC.cc
random
/
uniform.hh
wendao
/
calc_stress_tensor.cc
xyzVector.hh
wendao
/
calc_stress_tensor.cc
xyzMatrix.hh
wendao
/
calc_stress_tensor.cc
xyz.functions.hh
wendao
/
cenrot_bbsc_demo.cc
random
/
random.hh
wendao
/
cenrot_bbsc_demo.cc
constants.hh
wendao
/
cenrot_jd2.cc
random
/
random.hh
wendao
/
cyclic_sampler.cc
random
/
random.hh
wendao
/
cyclic_sampler.cc
constants.hh
wendao
/
fa_to_cenrot_score.cc
random
/
random.hh
wendao
/
fa_to_cenrot_score.cc
constants.hh
wendao
/
gen_cav_ball.cc
xyz.functions.hh
wendao
/
general_pair_counting.cc
random
/
random.hh
wendao
/
general_pair_counting.cc
constants.hh
wendao
/
general_pair_counting.cc
xyz.functions.hh
wendao
/
params_opt.cc
random
/
random.hh
wendao
/
test_bbmc.cc
random
/
random.hh
wendao
/
test_bbmc.cc
MultiDimensionalHistogram.hh
wendao
/
test_cen_rot.cc
random
/
random.hh
wendao
/
test_cen_rot.cc
constants.hh
will
/
sym_multicomp_test.cc
xyz.functions.hh
woodsh
/
mp_optimize_geometry_params.cc
xyzVector.hh
woodsh
/
mp_transition_bfactor.cc
xyzVector.hh
woodsh
/
set_radius.cc
xyzVector.hh
wujsean
/
graft_ligand.cc
xyzVector.hh
yfsong
/
challenge.cc
random
/
random.hh
yfsong
/
challenge.cc
model_quality
/
rms.hh
yfsong
/
challenge.cc
model_quality
/
maxsub.hh
yfsong
/
PB_potential.cc
xyz.functions.hh
yfsong
/
PB_potential.cc
xyzMatrix.hh
yfsong
/
PB_potential.cc
xyzVector.hh
yiliu
/
AbinitioClassic.cc
random
/
random.hh
Generated on Fri Sep 12 2025 00:06:08 for Rosetta by
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