Rosetta
src
apps
pilot
pilot → ObjexxFCL Relation
File in src/apps/pilot
Includes file in src/ObjexxFCL
brunette
/
abego_predict.cc
format.hh
rhiju
/
legacy
/
add_delete_monte_carlo.cc
FArray1D.hh
rhiju
/
legacy
/
add_delete_monte_carlo.cc
FArray2D.hh
rhiju
/
legacy
/
add_delete_monte_carlo.cc
format.hh
rhiju
/
legacy
/
add_delete_monte_carlo.cc
string.functions.hh
fcchou
/
adenosine_stack_test.cc
format.hh
fcchou
/
adenosine_stack_test.cc
string.functions.hh
smlewis
/
ascan
/
AlanineScanner.cc
string.functions.hh
mike
/
alignanalyse.cc
format.hh
mike
/
alignanalyse.cc
string.functions.hh
dgront
/
experiments
/
AllCrmsd.cc
FArray1D.hh
dgront
/
experiments
/
AllCrmsd.cc
FArray2D.hh
james
/
analyze_casp9.cc
format.hh
james
/
analyze_casp9.cc
string.functions.hh
james
/
angle_recovery_stats.cc
format.hh
james
/
angle_recovery_stats.cc
string.functions.hh
james
/
angles.cc
format.hh
james
/
angles.cc
string.functions.hh
james
/
anneal_align.cc
format.hh
brunette
/
armEval.cc
format.hh
will
/
old
/
atom_design.cc
FArray2D.hh
will
/
old
/
atom_design.cc
string.functions.hh
awatkins
/
b3a_distro_kinemage.cc
FArray3D.hh
barak
/
barak.score.cc
format.hh
will
/
old
/
bpy.cc
FArray2D.hh
will
/
old
/
bpy.cc
format.hh
will
/
old
/
bpy.cc
string.functions.hh
james
/
build_template.cc
format.hh
james
/
build_template.cc
string.functions.hh
kevin
/
bur_nodon_tyr.cc
FArray2D.hh
kevin
/
bur_nodon_tyr.cc
format.hh
james
/
burial.cc
format.hh
james
/
burial.cc
string.functions.hh
james
/
ca_build.cc
char.functions.hh
james
/
ca_build.cc
format.hh
james
/
ca_build.cc
string.functions.hh
neil
/
calc_ddG.cc
FArray2D.hh
neil
/
calc_ddG.cc
format.hh
jeliazkov
/
calc_irms_despite_mismatch.cc
FArray1D.fwd.hh
brunette
/
calcFractionFolded.cc
format.hh
phil
/
capri15.cc
format.hh
phil
/
capri15.cc
string.functions.hh
phil
/
capri15_scoring.hh
format.hh
phil
/
capri15_scoring.hh
string.functions.hh
james
/
casp9_superdev.cc
format.hh
james
/
casp9_superdev.cc
string.functions.hh
neil
/
char_native.cc
FArray2D.hh
neil
/
char_native.cc
format.hh
firas
/
check_burial.cc
format.hh
liz
/
close_homolog_refinement.cc
format.hh
will
/
old
/
cluster_cyc_disulf.cc
format.hh
will
/
old
/
coiled_coil.cc
FArray2D.hh
will
/
old
/
coiled_coil.cc
format.hh
will
/
old
/
coiled_coil.cc
string.functions.hh
neil
/
coiled_coil_search.cc
FArray2D.hh
neil
/
coiled_coil_search.cc
format.hh
neil
/
coiled_coil_search.cc
string.functions.hh
will
/
old
/
coiled_coil_zn.cc
FArray2D.hh
will
/
old
/
coiled_coil_zn.cc
format.hh
will
/
old
/
coiled_coil_zn.cc
string.functions.hh
barak
/
compare_structures.cc
format.hh
liz
/
consolidate_clusters.cc
FArray2D.hh
james
/
constraints_matrix.cc
format.hh
james
/
constraints_matrix.cc
string.functions.hh
james
/
constraints_viewer.cc
format.hh
james
/
constraints_viewer.cc
string.functions.hh
brunette
/
contact_map_from_homologs.cc
format.hh
mseetin
/
convert_pdb_to_silent_file.cc
format.hh
mseetin
/
convert_pdb_to_silent_file.cc
string.functions.hh
brunette
/
convertFragmentType.cc
format.hh
gktaylor
/
create_constraints.cc
format.hh
gktaylor
/
create_constraints.cc
string.functions.hh
will
/
old
/
crossmatch.cc
FArray3D.hh
will
/
old
/
crossmatch.cc
format.hh
will
/
old
/
crossmatch.cc
string.functions.hh
will
/
old
/
crossmatch_3e.cc
FArray3D.hh
will
/
old
/
crossmatch_3e.cc
format.hh
will
/
old
/
crossmatch_3e.cc
string.functions.hh
will
/
old
/
crossmatch_d2.cc
FArray3D.hh
will
/
old
/
crossmatch_d2.cc
format.hh
will
/
old
/
crossmatch_d2.cc
string.functions.hh
frank
/
cryst_design.cc
FArray2D.hh
frank
/
cryst_design.cc
FArray3D.hh
james
/
cs_align.cc
char.functions.hh
james
/
cs_align.cc
format.hh
james
/
cs_align.cc
string.functions.hh
james
/
cst_func.cc
format.hh
james
/
cst_func.cc
string.functions.hh
james
/
cst_quality.cc
format.hh
jacob
/
cxdesign.cc
FArray2D.hh
jacob
/
cxdesign.cc
format.hh
jacob
/
cxdesign.cc
string.functions.hh
jacob
/
cxdock.cc
FArray2D.hh
will
/
old
/
CXdock.cc
FArray2D.hh
jacob
/
cxdock.cc
FArray3D.hh
jacob
/
cxdock.cc
format.hh
will
/
old
/
CXdock.cc
format.hh
jacob
/
cxdock.cc
string.functions.hh
will
/
old
/
CXdock.cc
string.functions.hh
will
/
old
/
cxdock_sheet.cc
FArray2D.hh
will
/
old
/
cxdock_sheet.cc
format.hh
will
/
old
/
cxdock_sheet.cc
string.functions.hh
will
/
old
/
CXdock_TMP.cc
FArray2D.hh
will
/
old
/
CXdock_TMP.cc
format.hh
will
/
old
/
CXdock_TMP.cc
string.functions.hh
lior
/
CycDsulf.cc
format.hh
will
/
old
/
cycgly_bbg8t3a.cc
format.hh
will
/
old
/
cycgly_bbg8t3a.cc
string.functions.hh
will
/
old
/
cycgly_canonical.cc
format.hh
will
/
old
/
cycgly_canonical.cc
string.functions.hh
will
/
old
/
cycgly_superimpose.cc
FArray2D.hh
will
/
old
/
cycgly_superimpose.cc
format.hh
will
/
old
/
cycgly_superimpose.cc
string.functions.hh
will
/
old
/
cycgly_target.cc
format.hh
will
/
old
/
cycgly_target.cc
string.functions.hh
lior
/
CycPepMain.cc
format.hh
will
/
old
/
cycsamp.cc
format.hh
will
/
old
/
cycsamp.cc
string.functions.hh
will
/
old
/
d3_bpy_linker.cc
FArray2D.hh
will
/
old
/
d3_bpy_linker.cc
format.hh
will
/
old
/
d3_bpy_linker.cc
string.functions.hh
habib
/
david_align_and_recompute_score_and_rmsd.cc
FArray2D.hh
habib
/
david_align_append_and_recompute_score_and_rmsd.cc
FArray2D.hh
habib
/
david_darc_multirun.cc
FArray1D.hh
habib
/
david_darc_multirun.cc
FArray2D.hh
dekim
/
decoy_features.cc
format.hh
james
/
density_grid.cc
format.hh
james
/
density_grid.cc
string.functions.hh
neil
/
des_pos_ddG.cc
FArray2D.hh
neil
/
des_pos_ddG.cc
format.hh
will
/
old
/
design_DL.cc
FArray2D.hh
will
/
old
/
design_DL.cc
format.hh
will
/
old
/
design_DL.cc
string.functions.hh
neil
/
design_symm.bak.110314.cc
FArray2D.hh
neil
/
design_symm.bak.110314.cc
format.hh
neil
/
design_symm.cc
FArray2D.hh
neil
/
design_symm.cc
format.hh
neil
/
design_symm_110330_good.cc
FArray2D.hh
neil
/
design_symm_110330_good.cc
format.hh
neil
/
design_symm_no_hack_elec.cc
FArray2D.hh
neil
/
design_symm_no_hack_elec.cc
format.hh
will
/
old
/
designability_stats.cc
FArray2D.hh
will
/
old
/
designability_stats.cc
format.hh
will
/
old
/
designability_stats.cc
string.functions.hh
javierbq
/
detect_symmetry.cc
string.functions.hh
phil
/
dimer_relax.cc
string.functions.hh
james
/
distances.cc
format.hh
will
/
old
/
disulf_frag_match.cc
FArray2D.hh
will
/
old
/
disulf_frag_match.cc
format.hh
will
/
old
/
disulf_frag_match.cc
string.functions.hh
will
/
old
/
disulf_frag_search.cc
FArray2D.hh
will
/
old
/
disulf_frag_search.cc
format.hh
will
/
old
/
disulf_frag_search.cc
string.functions.hh
will
/
old
/
disulf_stat.cc
FArray2D.hh
will
/
old
/
disulf_stat.cc
string.functions.hh
phil
/
dna_design_test.cc
format.hh
phil
/
dna_dr_test.cc
format.hh
phil
/
dna_dr_test.cc
string.functions.hh
phil
/
dna_relax.cc
format.hh
phil
/
dna_relax.cc
string.functions.hh
phil
/
dna_spec_test.cc
format.hh
phil
/
dna_spec_test.cc
string.functions.hh
will
/
old
/
dock_asym.cc
FArray2D.hh
will
/
old
/
dock_asym.cc
format.hh
will
/
old
/
dock_asym.cc
string.functions.hh
frank
/
dock_pdb_into_density.cc
format.hh
james
/
dp_align.cc
char.functions.hh
james
/
dp_align.cc
format.hh
james
/
dp_align.cc
string.functions.hh
frank
/
dsrna_grow.cc
FArray1D.hh
frank
/
dsrna_grow.cc
FArray2D.hh
will
/
old
/
dubois.cc
FArray2D.hh
will
/
old
/
dubois.cc
format.hh
will
/
old
/
dubois.cc
string.functions.hh
will
/
old
/
dubois_graft.cc
FArray2D.hh
will
/
old
/
dubois_graft.cc
format.hh
will
/
old
/
dubois_graft.cc
string.functions.hh
will
/
old
/
dump_res.cc
FArray2D.hh
will
/
old
/
dump_res.cc
format.hh
will
/
old
/
dump_res.cc
string.functions.hh
brunette
/
dumpPhiPsiStats.cc
format.hh
will
/
old
/
dxdock.cc
FArray2D.hh
will
/
old
/
dxdock.cc
format.hh
will
/
old
/
dxdock.cc
string.functions.hh
will
/
old
/
dxdock_movie.cc
FArray2D.hh
will
/
old
/
dxdock_movie.cc
format.hh
will
/
old
/
dxdock_movie.cc
string.functions.hh
mike
/
energy_diff.cc
format.hh
mike
/
energy_diff.cc
string.functions.hh
liz
/
ensemble_generator.cc
format.hh
liz
/
ensemble_generator_score12_sidechain.cc
format.hh
neil
/
enumeration_test.cc
FArray2D.hh
neil
/
enumeration_test.cc
format.hh
rhiju
/
legacy
/
erraser_monte_carlo.cc
format.hh
rhiju
/
legacy
/
erraser_monte_carlo.cc
string.functions.hh
brunette
/
evalFullLength.cc
format.hh
brunette
/
evalRepeats.cc
format.hh
james
/
exhaustive_align.cc
format.hh
james
/
exhaustive_align.cc
string.functions.hh
barak
/
extend_range.cc
format.hh
brunette
/
extractNativeRepeats.cc
format.hh
james
/
filter_sequences.cc
char.functions.hh
james
/
filter_sequences.cc
format.hh
james
/
filter_sequences.cc
string.functions.hh
amuenks
/
find_ligand_local_res.cc
format.hh
brunette
/
findNaturallyOccuringAlphaRepeats.cc
format.hh
will
/
old
/
flail.cc
format.hh
will
/
old
/
flail.cc
string.functions.hh
will
/
old
/
fnd_dutton.cc
FArray2D.hh
will
/
old
/
fnd_dutton.cc
format.hh
will
/
old
/
fnd_dutton.cc
string.functions.hh
nobuyasu
/
foldptn.cc
format.hh
nobuyasu
/
frag2profile.cc
format.hh
javierbq
/
fragment_based_design.cc
string.functions.hh
kyleb
/
fragment_extract.cc
FArray1D.hh
kyleb
/
fragment_extract.cc
format.hh
kyleb
/
fragment_extract.cc
string.functions.hh
javierbq
/
fragment_sequence_quality.cc
format.hh
javierbq
/
fragment_sequence_quality.cc
string.functions.hh
brunette
/
fragments_to_ss.cc
format.hh
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/
old
/
FunGroupTK.cc
FArray2D.hh
will
/
old
/
FunGroupTK.cc
format.hh
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/
old
/
FunGroupTK.cc
string.functions.hh
will
/
old
/
FunGroupTK_test.cc
FArray2D.hh
will
/
old
/
FunGroupTK_test.cc
format.hh
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/
old
/
FunGroupTK_test.cc
string.functions.hh
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/
old
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gen3bpy.cc
FArray2D.hh
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/
old
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gen3bpy.cc
format.hh
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/
old
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gen3bpy.cc
string.functions.hh
will
/
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gen_cyc_gly.cc
format.hh
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gen_cyc_gly.cc
string.functions.hh
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gen_cyc_gly_cst.cc
format.hh
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gen_cyc_gly_cst.cc
string.functions.hh
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gen_d2.cc
FArray2D.hh
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gen_d2.cc
format.hh
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gen_d2.cc
string.functions.hh
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gen_d2_3his_ooc.cc
FArray2D.hh
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gen_d2_3his_ooc.cc
format.hh
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gen_d2_3his_ooc.cc
string.functions.hh
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gen_d2_4his.cc
FArray2D.hh
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gen_d2_4his.cc
format.hh
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gen_d2_4his.cc
string.functions.hh
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gen_d2_hhhc.cc
FArray2D.hh
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gen_d2_hhhc.cc
format.hh
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gen_d2_hhhc.cc
string.functions.hh
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gen_disulf_homodimer.cc
FArray2D.hh
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gen_disulf_homodimer.cc
format.hh
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gen_disulf_homodimer.cc
string.functions.hh
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gen_homo_hc.cc
FArray2D.hh
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gen_homo_hc.cc
format.hh
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gen_homo_hc.cc
string.functions.hh
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gen_trimer_disulf.cc
FArray2D.hh
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gen_trimer_disulf.cc
format.hh
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gen_trimer_disulf.cc
string.functions.hh
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gen_xtal_dimer_from_trimer.cc
FArray2D.hh
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gen_xtal_dimer_from_trimer.cc
format.hh
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gen_xtal_dimer_from_trimer.cc
string.functions.hh
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genI213.cc
FArray2D.hh
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genI213.cc
format.hh
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genI213.cc
string.functions.hh
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genI213_2comp.cc
FArray2D.hh
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genI213_2comp.cc
format.hh
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genI213_2comp.cc
string.functions.hh
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genI213_2dsf.cc
FArray2D.hh
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genI213_2dsf.cc
format.hh
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genI213_2dsf.cc
string.functions.hh
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genI213_gensym.cc
FArray2D.hh
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genI213_gensym.cc
format.hh
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genI213_gensym.cc
string.functions.hh
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genI213_nocontacts.cc
FArray2D.hh
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genI213_nocontacts.cc
format.hh
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genI213_nocontacts.cc
string.functions.hh
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genmatch.cc
FArray2D.hh
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genmatch.cc
format.hh
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genmatch.cc
string.functions.hh
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genmatch_3bpy.cc
FArray2D.hh
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genmatch_3bpy.cc
format.hh
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genmatch_3bpy.cc
string.functions.hh
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genmatch_d6_bhhcg.cc
FArray2D.hh
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genmatch_d6_bhhcg.cc
format.hh
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genmatch_d6_bhhcg.cc
string.functions.hh
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genmatch_d6_bpy.cc
FArray2D.hh
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genmatch_d6_bpy.cc
format.hh
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genmatch_d6_bpy.cc
string.functions.hh
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genmatch_m8.cc
FArray2D.hh
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genmatch_m8.cc
format.hh
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genmatch_m8.cc
string.functions.hh
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genP23.cc
FArray2D.hh
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genP23.cc
format.hh
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genP23.cc
string.functions.hh
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gensym_3bpy_from_dimer.cc
FArray2D.hh
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old
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gensym_3bpy_from_dimer.cc
format.hh
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old
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gensym_3bpy_from_dimer.cc
string.functions.hh
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gentetra.cc
FArray2D.hh
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gentetra.cc
format.hh
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gentetra.cc
string.functions.hh
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gentetra_bpy_from_znhis.cc
FArray2D.hh
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gentetra_bpy_from_znhis.cc
format.hh
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old
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gentetra_bpy_from_znhis.cc
string.functions.hh
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gentetra_from_trimer.cc
FArray2D.hh
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gentetra_from_trimer.cc
format.hh
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old
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gentetra_from_trimer.cc
string.functions.hh
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getDistConstraints.cc
FArray2D.hh
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gpu
/
gpu_cbdock.cc
FArray2D.hh
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old
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gpu
/
gpu_cbdock.cc
format.hh
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gpu
/
gpu_cbdock.cc
string.functions.hh
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gpu
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gpu_linker.cc
FArray2D.hh
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gpu
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gpu_linker.cc
format.hh
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gpu
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gpu_linker.cc
string.functions.hh
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gpu
/
gpu_score.cc
FArray2D.hh
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gpu
/
gpu_score.cc
format.hh
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gpu
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gpu_score.cc
string.functions.hh
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gpu
/
gpu_test.cc
FArray2D.hh
will
/
old
/
gpu
/
gpu_test.cc
format.hh
will
/
old
/
gpu
/
gpu_test.cc
string.functions.hh
will
/
old
/
gpu
/
gpu_test_Mxform.cc
FArray2D.hh
will
/
old
/
gpu
/
gpu_test_Mxform.cc
format.hh
will
/
old
/
gpu
/
gpu_test_Mxform.cc
string.functions.hh
jcorn
/
hbond_connect.cc
format.hh
will
/
old
/
hczndimer.cc
FArray2D.hh
will
/
old
/
hczndimer.cc
format.hh
will
/
old
/
hczndimer.cc
string.functions.hh
will
/
old
/
helix_assembly.cc
FArray2D.hh
will
/
old
/
helix_assembly.cc
format.hh
will
/
old
/
helix_assembly.cc
string.functions.hh
will
/
old
/
heterodock.cc
FArray2D.hh
will
/
old
/
heterodock.cc
format.hh
will
/
old
/
heterodock.cc
string.functions.hh
brunette
/
hle_predict.cc
format.hh
will
/
old
/
holes2_training_data.cc
FArray2D.hh
aginsparg
/
holes_identifier.cc
FArray1D.hh
will
/
old
/
holes_pbpdb.cc
FArray2D.hh
will
/
old
/
holes_test.cc
FArray2D.hh
will
/
old
/
holes_test.cc
format.hh
james
/
homolog_cst.hh
format.hh
gktaylor
/
homolog_cst.hh
format.hh
james
/
homolog_cst.hh
string.functions.hh
gktaylor
/
homolog_cst.hh
string.functions.hh
will
/
old
/
hubabinitio.cc
FArray2D.hh
will
/
old
/
hubabinitio.cc
format.hh
will
/
old
/
hubabinitio.cc
string.functions.hh
will
/
old
/
hubdenovo.cc
FArray2D.hh
will
/
old
/
hubdenovo.cc
format.hh
will
/
old
/
hubdenovo.cc
string.functions.hh
will
/
old
/
hubfragdesign.cc
FArray2D.hh
will
/
old
/
hubfragdesign.cc
format.hh
will
/
old
/
hubfragdesign.cc
string.functions.hh
james
/
hybrid.cc
char.functions.hh
james
/
hybrid.cc
FArray2D.hh
james
/
hybrid.cc
format.hh
james
/
hybrid.cc
string.functions.hh
will
/
old
/
IKFGDB.cc
FArray2D.hh
will
/
old
/
IKFGDB.cc
format.hh
will
/
old
/
IKFGDB.cc
string.functions.hh
jkleman
/
interface_statistics.cc
format.hh
will
/
old
/
isct_test.cc
FArray2D.hh
will
/
old
/
isct_test.cc
FArray3D.hh
will
/
old
/
isct_test.cc
format.hh
will
/
old
/
isct_test.cc
string.functions.hh
bcorreia
/
iterative_design.cc
string.functions.hh
james
/
jdock.cc
FArray2D.hh
james
/
jdock.cc
string.functions.hh
bjornw
/
jumpRT_test.cc
format.hh
james
/
kdtree_disulf.cc
FArray2A.fwd.hh
james
/
kdtree_disulf.cc
FArray2A.hh
james
/
kdtree_disulf.cc
format.hh
james
/
kdtree_disulf.cc
string.functions.hh
dgront
/
LibraryJumpSetup.cc
format.hh
dgront
/
LibraryJumpSetup.hh
FArray1D.hh
dgront
/
LibraryJumpSetup.hh
FArray2D.hh
aginsparg
/
ligand_discovery_search_protocol.cc
FArray1D.hh
mdsmith
/
ligand_motifs.cc
string.functions.hh
phil
/
loop_model.hh
format.hh
phil
/
loop_model.hh
string.functions.hh
awatkins
/
make_a3b_bundle.cc
format.hh
nobuyasu
/
make_blueprint.cc
format.hh
james
/
make_profile.cc
char.functions.hh
james
/
make_profile.cc
format.hh
james
/
make_profile.cc
string.functions.hh
james
/
mammoth_hack.cc
CArray.fwd.hh
james
/
mammoth_hack.cc
char.functions.hh
james
/
mammoth_hack.cc
ChunkVector.fwd.hh
james
/
mammoth_hack.cc
Cstring.fwd.hh
james
/
mammoth_hack.cc
Dimension.fwd.hh
james
/
mammoth_hack.cc
Dimension.hh
james
/
mammoth_hack.cc
DimensionExpression.hh
james
/
mammoth_hack.cc
DynamicIndexRange.fwd.hh
james
/
mammoth_hack.cc
DynamicIndexRange.hh
james
/
mammoth_hack.cc
FArray.hh
james
/
mammoth_hack.cc
FArray1.fwd.hh
james
/
mammoth_hack.cc
FArray1.hh
james
/
mammoth_hack.cc
FArray1A.fwd.hh
james
/
mammoth_hack.cc
FArray1A.hh
james
/
mammoth_hack.cc
FArray1D.fwd.hh
james
/
mammoth_hack.cc
FArray1D.hh
james
/
mammoth_hack.cc
FArray1P.fwd.hh
james
/
mammoth_hack.cc
FArray1P.hh
james
/
mammoth_hack.cc
FArray2.fwd.hh
james
/
mammoth_hack.cc
FArray2.hh
james
/
mammoth_hack.cc
FArray2A.fwd.hh
james
/
mammoth_hack.cc
FArray2A.hh
james
/
mammoth_hack.cc
FArray2D.fwd.hh
james
/
mammoth_hack.cc
FArray2D.hh
james
/
mammoth_hack.cc
FArray2P.fwd.hh
james
/
mammoth_hack.cc
FArray2P.hh
james
/
mammoth_hack.cc
FArray3.fwd.hh
james
/
mammoth_hack.cc
FArray3A.fwd.hh
james
/
mammoth_hack.cc
FArray3D.fwd.hh
james
/
mammoth_hack.cc
FArray3P.fwd.hh
james
/
mammoth_hack.cc
FArray4.fwd.hh
james
/
mammoth_hack.cc
FArray4A.fwd.hh
james
/
mammoth_hack.cc
FArray4D.fwd.hh
james
/
mammoth_hack.cc
FArray4P.fwd.hh
james
/
mammoth_hack.cc
FArray5.fwd.hh
james
/
mammoth_hack.cc
FArray5A.fwd.hh
james
/
mammoth_hack.cc
FArray5D.fwd.hh
james
/
mammoth_hack.cc
FArray5P.fwd.hh
james
/
mammoth_hack.cc
FArrayInitializer.fwd.hh
james
/
mammoth_hack.cc
FArrayInitializer.hh
james
/
mammoth_hack.cc
FArraySection.fwd.hh
james
/
mammoth_hack.cc
FArraySection.hh
james
/
mammoth_hack.cc
FArrayTraits.fwd.hh
james
/
mammoth_hack.cc
FArrayTraits.hh
james
/
mammoth_hack.cc
Fstring.fwd.hh
james
/
mammoth_hack.cc
IndexRange.fwd.hh
james
/
mammoth_hack.cc
IndexRange.hh
james
/
mammoth_hack.cc
KeyFArray1D.fwd.hh
james
/
mammoth_hack.cc
KeyFArray2D.fwd.hh
james
/
mammoth_hack.cc
KeyFArray3D.fwd.hh
james
/
mammoth_hack.cc
Observer.fwd.hh
james
/
mammoth_hack.cc
Observer.hh
james
/
mammoth_hack.cc
ObserverMulti.hh
james
/
mammoth_hack.cc
ObserverSingle.hh
james
/
mammoth_hack.cc
sbyte.fwd.hh
james
/
mammoth_hack.cc
SetWrapper.fwd.hh
james
/
mammoth_hack.cc
Star.fwd.hh
james
/
mammoth_hack.cc
Star.hh
james
/
mammoth_hack.cc
StaticIndexRange.fwd.hh
james
/
mammoth_hack.cc
StaticIndexRange.hh
james
/
mammoth_hack.cc
string.functions.hh
james
/
mammoth_hack.cc
TypeTraits.hh
james
/
mammoth_hack.cc
ubyte.fwd.hh
frank
/
map_morph.cc
FArray3D.hh
frank
/
map_morph.cc
string.functions.hh
will
/
old
/
match_disulf.cc
FArray2D.hh
neil
/
matdes_design.cc
FArray2D.hh
neil
/
matdes_design.cc
format.hh
neil
/
matdes_design_2comp.cc
FArray2D.hh
neil
/
matdes_design_2comp.cc
format.hh
neil
/
matdes_dock.cc
FArray2D.hh
neil
/
matdes_dock.cc
format.hh
neil
/
matdes_mutalyze.cc
FArray2D.hh
neil
/
matdes_mutalyze.cc
format.hh
mike
/
md.cc
format.hh
mike
/
md.cc
string.functions.hh
barthp
/
membrane_relax.cc
string.functions.hh
frank
/
min_test.cc
FArray2D.hh
mike
/
minbench.cc
string.functions.hh
brunette
/
minimalCstHomology.cc
format.hh
brunette
/
minimalCstRelax.cc
format.hh
will
/
old
/
minimize_cavities.cc
format.hh
liz
/
minimize_with_cst.cc
format.hh
will
/
old
/
mkresfile_i213.cc
FArray2D.hh
will
/
old
/
mkresfile_i213.cc
format.hh
jadolfbr
/
model_antibody_basic.cc
string.functions.hh
james
/
model_quality.cc
char.functions.hh
james
/
model_quality.cc
format.hh
james
/
model_quality.cc
string.functions.hh
james
/
model_quality.cc
TypeTraits.hh
liz
/
monomer_ddg.cc
FArray2D.hh
liz
/
monomer_ddg.cc
format.hh
will
/
old
/
motif_denovo_hb.cc
format.hh
will
/
old
/
motif_denovo_hb.cc
string.functions.hh
will
/
old
/
motif_hash_util.cc
format.hh
will
/
old
/
motif_hash_util.cc
string.functions.hh
phil
/
motif_scan.cc
format.hh
phil
/
motif_scan.cc
string.functions.hh
ashworth
/
multistate_design_ga.cc
format.hh
ashworth
/
multistate_design_ga.cc
string.functions.hh
will
/
old
/
nisod.cc
FArray2D.hh
will
/
old
/
nisod.cc
format.hh
will
/
old
/
nisod.cc
string.functions.hh
rhiju
/
legacy
/
OLD_TRIAL_protein_helix_assemble.cc
format.hh
rhiju
/
legacy
/
OLD_TRIAL_protein_helix_assemble.cc
string.functions.hh
opt_e
/
optE_simple.cc
format.hh
optE
/
optE_simple.cc
format.hh
optE
/
optE_simple.cc
string.functions.hh
opt_e
/
optE_simple.cc
string.functions.hh
jim
/
optE_test.cc
string.functions.hh
will
/
old
/
organopv.cc
FArray2D.hh
will
/
old
/
organopv.cc
format.hh
will
/
old
/
organopv.cc
string.functions.hh
brunette
/
outputAbego.cc
format.hh
brunette
/
outputLayerDesignBurial.cc
format.hh
brunette
/
outputRama.cc
format.hh
brunette
/
outputSasa.cc
format.hh
barak
/
overlay_bb_bondangles.cc
format.hh
barak
/
overlay_sidechains.cc
format.hh
will
/
old
/
pack_ddg.cc
format.hh
will
/
old
/
pack_ddg.cc
string.functions.hh
nobuyasu
/
pair_distance.cc
format.hh
parin
/
parin_test.cc
format.hh
parin
/
parin_test.cc
string.functions.hh
will
/
old
/
pentcb.cc
FArray2D.hh
will
/
old
/
pentcb.cc
format.hh
will
/
old
/
pentcb.cc
string.functions.hh
will
/
old
/
pentcb_design.cc
FArray2D.hh
will
/
old
/
pentcb_design.cc
format.hh
will
/
old
/
pentcb_design.cc
string.functions.hh
will
/
old
/
pentcb_test.cc
FArray2D.hh
will
/
old
/
pentcb_test.cc
format.hh
will
/
old
/
pentcb_test.cc
string.functions.hh
chrisk
/
pep_analysis.cc
format.hh
chrisk
/
pep_analysis.cc
string.functions.hh
chrisk
/
pep_gly.cc
format.hh
chrisk
/
pep_gly.cc
string.functions.hh
chrisk
/
pep_nrg.cc
format.hh
chrisk
/
pep_nrg.cc
string.functions.hh
chrisk
/
pep_opt.cc
format.hh
chrisk
/
pep_opt.cc
string.functions.hh
chrisk
/
pep_opt_parallel.cc
format.hh
chrisk
/
pep_opt_parallel.cc
string.functions.hh
chrisk
/
pep_paapp.cc
format.hh
chrisk
/
pep_paapp.cc
string.functions.hh
chrisk
/
pep_prep.cc
string.functions.hh
chrisk
/
pep_prepspec.cc
format.hh
chrisk
/
pep_prepspec.cc
string.functions.hh
chrisk
/
pep_rama.cc
format.hh
chrisk
/
pep_rama.cc
string.functions.hh
chrisk
/
pep_ref.cc
format.hh
chrisk
/
pep_ref.cc
string.functions.hh
chrisk
/
pep_spec.03-11.cc
format.hh
chrisk
/
pep_spec.03-11.cc
string.functions.hh
chrisk
/
pep_spec.06-23.cc
format.hh
chrisk
/
pep_spec.06-23.cc
string.functions.hh
chrisk
/
pep_spec.cc
format.hh
chrisk
/
pep_spec.cc
string.functions.hh
chrisk
/
pep_spec_flx.cc
format.hh
chrisk
/
pep_spec_flx.cc
string.functions.hh
chrisk
/
pep_spec_flx.mov.cc
format.hh
chrisk
/
pep_spec_flx.mov.cc
string.functions.hh
chrisk
/
pepspec.cc
string.functions.hh
chrisk
/
pepspec_anchor_dock.cc
string.functions.hh
james
/
per_residue_features.cc
format.hh
kale
/
kic_refactor
/
original
/
perturb_LoopMover_KIC.cc
format.hh
james
/
phi_hack.cc
format.hh
james
/
phi_hack.cc
string.functions.hh
phil
/
phil.hh
format.hh
phil
/
phil.hh
string.functions.hh
nobuyasu
/
pick_bab.cc
format.hh
james
/
pick_frags.cc
char.functions.hh
james
/
pick_frags.cc
format.hh
james
/
pick_frags.cc
string.functions.hh
will
/
old
/
pilot_packstat.cc
format.hh
will
/
old
/
print_dunscores.cc
FArray2D.hh
will
/
old
/
print_dunscores.cc
string.functions.hh
barak
/
print_phipsi.cc
format.hh
james
/
prof_search.cc
char.functions.hh
james
/
prof_search.cc
format.hh
james
/
prof_search.cc
string.functions.hh
olli
/
r_assign_clusters.cc
format.hh
olli
/
r_frag_picker.cc
format.hh
olli
/
r_frag_picker.cc
string.functions.hh
olli
/
r_frag_quality.cc
format.hh
olli
/
r_local_rdc.cc
format.hh
olli
/
r_local_rdc.cc
string.functions.hh
olli
/
r_min_check.cc
format.hh
olli
/
r_mpi.cc
char.functions.hh
olli
/
r_mpi.cc
format.hh
olli
/
r_mpi.cc
string.functions.hh
olli
/
r_parse_foldtree.cc
format.hh
olli
/
r_parse_foldtree.cc
string.functions.hh
olli
/
r_pdb2top.cc
format.hh
olli
/
r_pdb2top.cc
string.functions.hh
olli
/
r_rmsf.cc
FArray1D.hh
olli
/
r_rmsf.cc
format.hh
olli
/
r_score_rdc.cc
format.hh
nobuyasu
/
rama.cc
format.hh
will
/
old
/
rblinker.cc
FArray3D.hh
will
/
old
/
rblinker.cc
format.hh
will
/
old
/
rblinker.cc
string.functions.hh
will
/
old
/
rblinker2.cc
FArray3D.hh
will
/
old
/
rblinker2.cc
format.hh
will
/
old
/
rblinker2.cc
string.functions.hh
will
/
old
/
rblinker2_overlay_bound.cc
FArray3D.hh
will
/
old
/
rblinker2_overlay_bound.cc
format.hh
will
/
old
/
rblinker2_overlay_bound.cc
string.functions.hh
will
/
old
/
rblinker2_test.cc
FArray3D.hh
will
/
old
/
rblinker2_test.cc
format.hh
will
/
old
/
rblinker2_test.cc
string.functions.hh
ian
/
redo_rms_atomtree_diffs.cc
FArray1.io.hh
ian
/
redo_rms_atomtree_diffs.cc
FArray1D.hh
neil
/
relax_building_block.cc
FArray2D.hh
neil
/
relax_building_block.cc
format.hh
mike
/
relax_viewer.cc
string.functions.hh
phil
/
repeat_demo.cc
format.hh
brunette
/
repeat_dock.cc
format.hh
will
/
old
/
rescore_i213.cc
FArray2D.hh
will
/
old
/
rescore_i213.cc
format.hh
mike
/
rosetta_native_client.cc
string.functions.hh
will
/
old
/
rsd_canonical_units.cc
FArray2D.hh
will
/
old
/
rsd_canonical_units.cc
format.hh
will
/
old
/
rsd_canonical_units.cc
string.functions.hh
liz
/
sasa.cc
format.hh
james
/
sc_interaction.cc
format.hh
liz
/
score_ddgs.cc
FArray2D.hh
liz
/
score_ddgs.cc
format.hh
nobuyasu
/
score_delete_segments.cc
format.hh
dekim
/
score_nonlocal_frags.cc
FArray2D.hh
will
/
old
/
score_pdbs.cc
format.hh
will
/
old
/
score_pdbs.cc
string.functions.hh
mike
/
sctrials.cc
string.functions.hh
james
/
seqdb_stats.cc
char.functions.hh
james
/
seqdb_stats.cc
format.hh
james
/
seqdb_stats.cc
string.functions.hh
arubenstein
/
sequence_tolerance_mf.cc
format.hh
arubenstein
/
sequence_tolerance_mf.cc
string.functions.hh
combss
/
sequencerecovery.cc
FArray2D.hh
combss
/
sequencerecovery.cc
format.hh
will
/
old
/
sf4_hash.cc
FArray2D.hh
will
/
old
/
sf4_hash.cc
format.hh
will
/
old
/
sf4_hash.cc
string.functions.hh
will
/
old
/
sicdock.cc
FArray2D.hh
will
/
old
/
sicdock.cc
format.hh
will
/
old
/
sicdock.cc
string.functions.hh
james
/
silent_cst_quality.cc
format.hh
james
/
silent_cst_quality.cc
string.functions.hh
brunette
/
silents_to_ss.cc
format.hh
james
/
simple_cm.cc
char.functions.hh
james
/
simple_cm.cc
format.hh
james
/
simple_cm.cc
string.functions.hh
phil
/
simple_dna_regression_test.cc
format.hh
chen
/
simple_dna_regression_test.cc
format.hh
phil
/
simple_dna_regression_test.cc
string.functions.hh
will
/
old
/
smhybrid.cc
FArray2D.hh
will
/
old
/
smhybrid.cc
format.hh
will
/
old
/
smhybrid.cc
string.functions.hh
aginsparg
/
space_fill_analysis.cc
FArray1D.hh
james
/
sparta_superdev.cc
format.hh
james
/
sparta_superdev.cc
string.functions.hh
dgront
/
SpecificJumpSetup.cc
format.hh
dgront
/
SpecificJumpSetup.hh
FArray1D.hh
dgront
/
SpecificJumpSetup.hh
FArray2D.hh
will
/
old
/
sphere_hierarchy.cc
FArray2D.hh
will
/
old
/
sphere_hierarchy.cc
FArray3D.hh
will
/
old
/
sphere_hierarchy.cc
format.hh
will
/
old
/
sphere_hierarchy.cc
string.functions.hh
will
/
old
/
SphereSample.hh
format.hh
georgkuenze
/
spinlabel_activity.cc
FArray1D.hh
will
/
old
/
spiro.cc
FArray2D.hh
will
/
old
/
spiro.cc
format.hh
will
/
old
/
spiro.cc
string.functions.hh
rhiju
/
legacy
/
stepwise_test.cc
FArray1D.hh
rhiju
/
legacy
/
stepwise_test.cc
format.hh
rhiju
/
legacy
/
stepwise_test.cc
string.functions.hh
james
/
superdev.cc
format.hh
james
/
superdev.cc
string.functions.hh
fcchou
/
swa_rna_analytical_closure.cc
FArray1D.hh
fcchou
/
swa_rna_analytical_closure.cc
FArray2D.hh
fcchou
/
swa_rna_analytical_closure.cc
format.hh
fcchou
/
swa_rna_analytical_closure.cc
string.functions.hh
javierbq
/
swap_elements.cc
format.hh
javierbq
/
swap_elements.cc
string.functions.hh
andrew
/
sweep_respair_energies.cc
format.hh
neil
/
symdock_enum.cc
FArray2D.hh
neil
/
symdock_enum.cc
FArray3D.hh
neil
/
symdock_enum.cc
format.hh
neil
/
symdock_enum.cc
string.functions.hh
will
/
old
/
symdock_enum_3_1.cc
FArray2D.hh
neil
/
symdock_enum_3_1.cc
FArray2D.hh
will
/
old
/
symdock_enum_3_1.cc
FArray3D.hh
neil
/
symdock_enum_3_1.cc
FArray3D.hh
neil
/
symdock_enum_3_1.cc
format.hh
will
/
old
/
symdock_enum_3_1.cc
format.hh
neil
/
symdock_enum_3_1.cc
string.functions.hh
will
/
old
/
symdock_enum_3_1.cc
string.functions.hh
will
/
old
/
symdock_hybrid.cc
FArray1D.hh
will
/
old
/
symdock_hybrid.cc
FArray2D.hh
will
/
old
/
symdock_hybrid.cc
format.hh
will
/
old
/
symdock_hybrid_cc3.cc
FArray1D.hh
will
/
old
/
symdock_hybrid_cc3.cc
FArray2D.hh
will
/
old
/
symdock_hybrid_cc3.cc
format.hh
will
/
old
/
tcdock.cc
FArray2D.hh
will
/
old
/
tcdock.cc
FArray3D.hh
will
/
old
/
tcdock.cc
format.hh
will
/
old
/
tcdock.cc
string.functions.hh
phil
/
test1.cc
FArray2D.hh
phil
/
test1.cc
format.hh
phil
/
test1.cc
string.functions.hh
hpark
/
test_bbmc.cc
Fmath.hh
hpark
/
test_bbmc.cc
format.hh
hpark
/
test_bbmc.cc
string.functions.hh
hpark
/
test_bbmc.org.cc
Fmath.hh
hpark
/
test_bbmc.org.cc
format.hh
hpark
/
test_bbmc.org.cc
string.functions.hh
barak
/
test_frags.barak.cc
format.hh
will
/
old
/
test_ikrs.cc
FArray2D.hh
will
/
old
/
test_ikrs.cc
format.hh
will
/
old
/
test_ikrs.cc
string.functions.hh
will
/
old
/
test_ikrs2.cc
FArray2D.hh
will
/
old
/
test_ikrs2.cc
format.hh
will
/
old
/
test_ikrs2.cc
string.functions.hh
will
/
old
/
test_ikrs_flymake.cc
FArray2D.hh
will
/
old
/
test_ikrs_flymake.cc
format.hh
will
/
old
/
test_ikrs_flymake.cc
string.functions.hh
will
/
old
/
test_kc.cc
format.hh
will
/
old
/
test_kc.cc
string.functions.hh
will
/
old
/
test_loop_hash.cc
format.hh
will
/
old
/
test_loop_hash.cc
string.functions.hh
will
/
old
/
test_rose.cc
format.hh
mike
/
testderiv.cc
format.hh
mike
/
testderiv.cc
string.functions.hh
mike
/
testmpi.cc
FArray4D.hh
barak
/
thread_bb.cc
format.hh
james
/
thread_fast.cc
char.functions.hh
james
/
thread_fast.cc
FArray2D.hh
james
/
thread_fast.cc
format.hh
james
/
thread_fast.cc
string.functions.hh
dgront
/
tnm_sampler.cc
format.hh
rhiju
/
legacy
/
TRIAL_protein_helix_assemble.cc
FArray1D.hh
rhiju
/
legacy
/
TRIAL_protein_helix_assemble.cc
FArray3D.hh
rhiju
/
legacy
/
TRIAL_protein_helix_assemble.cc
format.hh
rhiju
/
legacy
/
TRIAL_protein_helix_assemble.cc
string.functions.hh
awatkins
/
trial_rna_mutants.cc
DynamicIndexRange.hh
awatkins
/
trial_rna_mutants.cc
FArray1D.hh
awatkins
/
trial_rna_mutants.cc
format.hh
awatkins
/
trial_rna_mutants.cc
string.functions.hh
rhiju
/
legacy
/
turner_rules_test.cc
format.hh
rhiju
/
legacy
/
turner_rules_test.cc
string.functions.hh
rhiju
/
legacy
/
turner_rules_test_WORKS.cc
format.hh
rhiju
/
legacy
/
turner_rules_test_WORKS.cc
string.functions.hh
fcchou
/
turner_test_double_helix.cc
format.hh
fcchou
/
turner_test_double_helix.cc
string.functions.hh
fcchou
/
turner_test_one_chain.cc
format.hh
fcchou
/
turner_test_one_chain.cc
string.functions.hh
fcchou
/
turner_two_chain.cc
format.hh
fcchou
/
turner_two_chain.cc
string.functions.hh
jim
/
use_asn_motifs.cc
string.functions.hh
ralford
/
archive
/
version_mpscorefxn.cc
format.hh
andrew
/
version_scorefunction.cc
format.hh
will
/
old
/
ward_design.cc
FArray2D.hh
will
/
old
/
ward_design.cc
format.hh
will
/
old
/
ward_design.cc
string.functions.hh
will
/
old
/
will_mutalyze.cc
FArray2D.hh
will
/
old
/
will_mutalyze.cc
format.hh
will
/
old
/
willmatch_2d6_bhe.cc
FArray2D.hh
will
/
old
/
willmatch_2d6_bhe.cc
format.hh
will
/
old
/
willmatch_2d6_bhe.cc
string.functions.hh
will
/
old
/
willmatch_chorismate.cc
FArray2D.hh
will
/
old
/
willmatch_chorismate.cc
string.functions.hh
will
/
old
/
willmatch_d6_bpy.cc
FArray2D.hh
will
/
old
/
willmatch_d6_bpy.cc
format.hh
will
/
old
/
willmatch_d6_bpy.cc
string.functions.hh
will
/
old
/
yeates_align.cc
FArray2D.hh
will
/
old
/
yeates_align.cc
format.hh
phil
/
zf_relax.cc
format.hh
phil
/
zf_relax.cc
string.functions.hh
chu
/
zinc_stat.cc
format.hh
will
/
old
/
query_lang
/
filter.cc
string.functions.hh
will
/
old
/
query_lang
/
metric.cc
string.functions.hh
ragul
/
ragul_darc_minimize.cc
FArray2D.hh
ralford
/
version_mpscorefxn.cc
format.hh
rayyrw
/
cal_nonoverlap_scores.cc
format.hh
rayyrw
/
cal_overlap_scores.cc
format.hh
rayyrw
/
closability_score.hh
format.hh
rayyrw
/
FragMonteCarlo.hh
format.hh
rayyrw
/
min_pack_min.hh
format.hh
rayyrw
/
place_fragments_into_density.cc
format.hh
reggiano
/
density_res_zscores.cc
format.hh
rhiju
/
benzene_test.cc
format.hh
rhiju
/
benzene_test.cc
string.functions.hh
rhiju
/
block_stack_test.cc
string.functions.hh
rhiju
/
block_stack_test.cc
format.hh
rhiju
/
coarse_rna_test.cc
format.hh
rhiju
/
coarse_rna_test.cc
string.functions.hh
rhiju
/
dna_test.cc
format.hh
rhiju
/
easy_target_test.cc
format.hh
rhiju
/
easy_target_test.cc
string.functions.hh
rhiju
/
entropy_test.cc
format.hh
rhiju
/
entropy_test.cc
string.functions.hh
rhiju
/
entropy_test.cc
FArray1D.hh
rhiju
/
gcc185_test.cc
format.hh
rhiju
/
gcc185_test.cc
string.functions.hh
rhiju
/
get_info.cc
FArray2D.hh
rhiju
/
get_info.cc
format.hh
rhiju
/
get_info.cc
string.functions.hh
rhiju
/
loop_closure_test.cc
format.hh
rhiju
/
loop_closure_test.cc
string.functions.hh
rhiju
/
loop_closure_test.cc
FArray1D.hh
rhiju
/
mg_hires_pdbstats.cc
format.hh
rhiju
/
mg_lores_pdbstats.cc
format.hh
rhiju
/
morph_pdbs.cc
string.functions.hh
rhiju
/
pack_phosphates.cc
string.functions.hh
rhiju
/
pack_phosphates.cc
format.hh
rhiju
/
pdbstats_rnahelix.cc
format.hh
rhiju
/
pdbstats_rnahelix.cc
FArray1D.hh
rhiju
/
pdbstats_rnahelix.cc
FArray2D.hh
rhiju
/
pdbstats_rnahelix.cc
string.functions.hh
rhiju
/
pdbstats_test.cc
format.hh
rhiju
/
pdbstats_test.cc
FArray1D.hh
rhiju
/
pdbstats_test.cc
FArray2D.hh
rhiju
/
pdbstats_test.cc
string.functions.hh
rhiju
/
polar_pdbstats.cc
format.hh
rhiju
/
polar_pdbstats.cc
FArray2D.hh
rhiju
/
polar_pdbstats.cc
string.functions.hh
rhiju
/
protein_helix_assemble.cc
format.hh
rhiju
/
protein_helix_assemble.cc
string.functions.hh
rhiju
/
protein_helix_assemble.cc
FArray1D.hh
rhiju
/
protein_helix_assemble.cc
FArray3D.hh
rhiju
/
rb_entropy.cc
string.functions.hh
rhiju
/
rna_assemble_test.cc
format.hh
rhiju
/
rna_assemble_test.cc
string.functions.hh
rhiju
/
rna_protein_test.cc
format.hh
rhiju
/
rna_protein_test.cc
string.functions.hh
rhiju
/
rna_test.cc
format.hh
rhiju
/
rna_test.cc
string.functions.hh
rhiju
/
silly_tag_stuff.cc
string.functions.hh
rhiju
/
stepwise_centroid_test.cc
string.functions.hh
rhiju
/
stepwise_centroid_test.cc
FArray1D.hh
rhiju
/
stepwise_helix_test.cc
format.hh
rhiju
/
stepwise_helix_test.cc
string.functions.hh
rhiju
/
stepwise_loop_test.cc
format.hh
rhiju
/
stepwise_loop_test.cc
string.functions.hh
rhiju
/
stepwise_loop_test.cc
FArray1D.hh
rhiju
/
stepwise_lores_test.cc
string.functions.hh
rhiju
/
stepwise_lores_test.cc
format.hh
rhiju
/
stepwise_template_test.cc
format.hh
rhiju
/
stepwise_template_test.cc
string.functions.hh
rhiju
/
stepwise_template_test.cc
FArray1D.hh
rmoretti
/
ligand_dock_jd1.cc
string.functions.hh
ronj
/
analyze_ddG.cc
format.hh
ronj
/
find_position_matches_using_inverse_rotamers.cc
format.hh
ronj
/
hydrophobic_patch_stats_calculator.cc
format.hh
ronj
/
rss_energy_calculator.cc
format.hh
ronj
/
surfacescore.cc
format.hh
rvernon
/
calc_pair_stats.cc
char.functions.hh
rvernon
/
calc_pair_stats.cc
string.functions.hh
rvernon
/
calc_pair_stats.cc
format.hh
rvernon
/
compute_disulfide_matching_score.cc
char.functions.hh
rvernon
/
compute_disulfide_matching_score.cc
string.functions.hh
rvernon
/
compute_disulfide_matching_score.cc
FArray2A.hh
rvernon
/
compute_disulfide_matching_score.cc
FArray2A.fwd.hh
rvernon
/
compute_disulfide_matching_score.cc
format.hh
rvernon
/
create_disulfide_alldata.cc
char.functions.hh
rvernon
/
create_disulfide_alldata.cc
string.functions.hh
rvernon
/
create_disulfide_alldata.cc
FArray2A.hh
rvernon
/
create_disulfide_alldata.cc
FArray2A.fwd.hh
rvernon
/
create_disulfide_alldata.cc
format.hh
rvernon
/
create_disulfide_angle_statistics.cc
char.functions.hh
rvernon
/
create_disulfide_angle_statistics.cc
string.functions.hh
rvernon
/
create_disulfide_angle_statistics.cc
FArray2A.hh
rvernon
/
create_disulfide_angle_statistics.cc
FArray2A.fwd.hh
rvernon
/
create_disulfide_angle_statistics.cc
format.hh
rvernon
/
create_disulfide_database.cc
char.functions.hh
rvernon
/
create_disulfide_database.cc
string.functions.hh
rvernon
/
create_disulfide_database.cc
FArray2A.hh
rvernon
/
create_disulfide_database.cc
FArray2A.fwd.hh
rvernon
/
create_disulfide_database.cc
format.hh
rvernon
/
create_disulfide_distance_statistics.cc
char.functions.hh
rvernon
/
create_disulfide_distance_statistics.cc
string.functions.hh
rvernon
/
create_disulfide_distance_statistics.cc
FArray2A.hh
rvernon
/
create_disulfide_distance_statistics.cc
FArray2A.fwd.hh
rvernon
/
create_disulfide_distance_statistics.cc
format.hh
rvernon
/
create_disulfide_fa_angle_statistics.cc
char.functions.hh
rvernon
/
create_disulfide_fa_angle_statistics.cc
string.functions.hh
rvernon
/
create_disulfide_fa_angle_statistics.cc
FArray2A.hh
rvernon
/
create_disulfide_fa_angle_statistics.cc
FArray2A.fwd.hh
rvernon
/
create_disulfide_fa_angle_statistics.cc
format.hh
rvernon
/
pcs_distances_for_fragpicker.cc
char.functions.hh
rvernon
/
pcs_distances_for_fragpicker.cc
string.functions.hh
rvernon
/
pcs_distances_for_fragpicker.cc
FArray2A.hh
rvernon
/
pcs_distances_for_fragpicker.cc
FArray2A.fwd.hh
rvernon
/
pcs_distances_for_fragpicker.cc
format.hh
rvernon
/
pcs_fragments_to_distances.cc
char.functions.hh
rvernon
/
pcs_fragments_to_distances.cc
string.functions.hh
rvernon
/
pcs_fragments_to_distances.cc
FArray2A.hh
rvernon
/
pcs_fragments_to_distances.cc
FArray2A.fwd.hh
rvernon
/
pcs_fragments_to_distances.cc
format.hh
rvernon
/
pcs_fragments_to_distances2.cc
char.functions.hh
rvernon
/
pcs_fragments_to_distances2.cc
string.functions.hh
rvernon
/
pcs_fragments_to_distances2.cc
FArray2A.hh
rvernon
/
pcs_fragments_to_distances2.cc
FArray2A.fwd.hh
rvernon
/
pcs_fragments_to_distances2.cc
format.hh
rvernon
/
pcs_fragments_to_distances_wRMS.cc
char.functions.hh
rvernon
/
pcs_fragments_to_distances_wRMS.cc
string.functions.hh
rvernon
/
pcs_fragments_to_distances_wRMS.cc
FArray2A.hh
rvernon
/
pcs_fragments_to_distances_wRMS.cc
FArray2A.fwd.hh
rvernon
/
pcs_fragments_to_distances_wRMS.cc
format.hh
rvernon
/
pcs_score_individual_residues.cc
char.functions.hh
rvernon
/
pcs_score_individual_residues.cc
string.functions.hh
rvernon
/
pcs_score_individual_residues.cc
FArray2A.hh
rvernon
/
pcs_score_individual_residues.cc
FArray2A.fwd.hh
rvernon
/
pcs_score_individual_residues.cc
format.hh
rvernon
/
pcs_score_residues.cc
char.functions.hh
rvernon
/
pcs_score_residues.cc
string.functions.hh
rvernon
/
pcs_score_residues.cc
FArray2A.hh
rvernon
/
pcs_score_residues.cc
FArray2A.fwd.hh
rvernon
/
pcs_score_residues.cc
format.hh
rvernon
/
pcs_score_select.cc
char.functions.hh
rvernon
/
pcs_score_select.cc
string.functions.hh
rvernon
/
pcs_score_select.cc
FArray2A.hh
rvernon
/
pcs_score_select.cc
FArray2A.fwd.hh
rvernon
/
pcs_score_select.cc
format.hh
rvernon
/
pcs_score_select_helices.cc
char.functions.hh
rvernon
/
pcs_score_select_helices.cc
string.functions.hh
rvernon
/
pcs_score_select_helices.cc
FArray2A.hh
rvernon
/
pcs_score_select_helices.cc
FArray2A.fwd.hh
rvernon
/
pcs_score_select_helices.cc
format.hh
dgront
/
saxs
/
call_saxs_score.cc
format.hh
dgront
/
saxs
/
linker_sampler.cc
format.hh
sergey
/
PDBTest.cc
format.hh
sergey
/
PDBTest.cc
string.functions.hh
shilei
/
bb_cluster.cc
FArray2D.hh
shilei
/
cluster_hotspot_docking.cc
FArray2D.hh
shilei
/
complex_interface_optimize.cc
FArray2D.hh
shilei
/
generate_hbond_geometry.cc
FArray2D.hh
shilei
/
match_disulfide_to_scaffold.cc
FArray2D.hh
shilei
/
match_disulfide_to_scaffold.cc
format.hh
shilei
/
match_disulfide_to_scaffold.cc
string.functions.hh
shilei
/
tmalign_cluster.cc
FArray2D.hh
shirst
/
TestTopologySampler.cc
FArray1D.hh
shirst
/
TestTopologySampler.cc
FArray2D.hh
sthyme
/
dna_motifs_collector.cc
string.functions.hh
sthyme
/
ligand_motifs.cc
string.functions.hh
stranges
/
InterfaceMutMaker.cc
format.hh
stranges
/
simple_interfaceanalyzer.cc
format.hh
tjacobs
/
BundleDumper.cc
FArray1D.hh
tjacobs
/
BundleDumper.cc
FArray2D.hh
tjacobs
/
BundlePairRmsdCalculator.cc
FArray1D.hh
tjacobs
/
BundlePairRmsdCalculator.cc
FArray2D.hh
tjacobs
/
BundlePairRmsdCalculatorGPU.cc
FArray1D.hh
tjacobs
/
BundlePairRmsdCalculatorGPU.cc
FArray2D.hh
tjacobs
/
CompareBundleToNative.cc
FArray1D.hh
tjacobs
/
CompareBundleToNative.cc
FArray2D.hh
tjacobs
/
InterfaceStrandFinderMover.cc
FArray2D.fwd.hh
tjacobs
/
InterfaceStrandFinderMover.cc
FArray2.hh
tjacobs
/
InterfaceStrandFinderMover.cc
ObserverMulti.hh
tjacobs
/
InterfaceStrandFinderMover.cc
DynamicIndexRange.hh
tjacobs
/
InterfaceStrandFinderMover.cc
FArrayInitializer.hh
tjacobs
/
NodePairRmsdCalculator.cc
FArray1D.hh
tjacobs
/
NodePairRmsdCalculator.cc
FArray2D.hh
tjacobs
/
SmotifPairRmsdCalculatorGPU.CC
FArray1D.hh
tjacobs
/
SmotifPairRmsdCalculatorGPU.CC
FArray2D.hh
vmullig
/
bettercluster.cc
format.hh
vmullig
/
bettercluster.cc
FArray2D.hh
vmullig
/
design_cycpeptide_MPI.cc
format.hh
vmullig
/
design_cycpeptide_MPI.cc
string.functions.hh
vmullig
/
design_truecycpeptide_fromstub.cc
format.hh
vmullig
/
design_truecycpeptide_fromstub.cc
FArray2D.hh
vmullig
/
make_betahelicalbundle.cc
format.hh
vmullig
/
make_helicalbundle.cc
format.hh
vmullig
/
make_ideal_betapeptide.cc
format.hh
vmullig
/
make_truecyclicpeptide.cc
FArray2D.hh
vmullig
/
make_truecyclicpeptide.cc
format.hh
vmullig
/
make_truecyclicpeptide.cc
string.functions.hh
vmullig
/
PCA_internal_test.cc
format.hh
vmullig
/
PCA_visualizer.cc
format.hh
vmullig
/
test_cyclic_rama.cc
FArray2D.hh
vmullig
/
test_cyclic_rama.cc
format.hh
vmullig
/
test_cyclic_rama.cc
string.functions.hh
vmullig
/
test_D_scoring.cc
FArray2D.hh
vmullig
/
test_D_scoring.cc
format.hh
vmullig
/
test_D_scoring.cc
string.functions.hh
vmullig
/
test_KIC_betapeptide.cc
format.hh
vmullig
/
test_metalloproteins.cc
FArray2D.hh
vmullig
/
test_metalloproteins.cc
format.hh
vmullig
/
test_metalloproteins.cc
string.functions.hh
vmullig
/
test_sidechainKIC.cc
FArray2D.hh
vmullig
/
test_sidechainKIC.cc
format.hh
vmullig
/
test_sidechainKIC.cc
string.functions.hh
wendao
/
gen_cav_ball.cc
format.hh
wendao
/
test_bbmc.cc
Fmath.hh
wendao
/
test_bbmc.cc
format.hh
wendao
/
test_bbmc.cc
string.functions.hh
will
/
holes.cc
format.hh
yfsong
/
challenge.cc
FArray2D.hh
yfsong
/
challenge.cc
format.hh
yfsong
/
PB_potential.cc
format.hh
yfsong
/
PB_potential.cc
FArray3D.hh
yfsong
/
plot_hb.cc
format.hh
yfsong
/
util.hh
FArray2D.hh
yiliu
/
design_contrast_and_statistic.cc
format.hh
zhezhang
/
extract_CA_coords.cc
format.hh
zhezhang
/
extract_CA_coords.cc
FArray2D.hh
zhezhang
/
extract_replica.cc
FArray1D.hh
zhezhang
/
extract_replica.cc
format.hh
zhezhang
/
extract_replica.cc
string.functions.hh
zhezhang
/
fasta2pdb.cc
FArray1D.hh
zhezhang
/
fasta2pdb.cc
format.hh
zhezhang
/
fasta2pdb.cc
string.functions.hh
zhezhang
/
r_rmsf.cc
FArray1D.hh
zhezhang
/
r_rmsf.cc
format.hh
zhezhang
/
r_rmsf.cc
string.functions.hh
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