Rosetta
src
apps
pilot
will
old
old → utility Relation
File in src/apps/pilot/will/old
Includes file in src/utility
atom_design.cc
io
/
ozstream.hh
atom_design.cc
string_util.hh
atom_design.cc
vector0.hh
atom_design.cc
vector1.hh
atom_type_rdf.cc
io
/
ozstream.hh
bpy.cc
io
/
izstream.hh
bpy.cc
io
/
ozstream.hh
cluster_cyc_disulf.cc
vector1.hh
coiled_coil.cc
io
/
izstream.hh
coiled_coil.cc
io
/
ozstream.hh
coiled_coil_zn.cc
io
/
izstream.hh
coiled_coil_zn.cc
io
/
ozstream.hh
crossmatch.cc
excn
/
Exceptions.hh
crossmatch.cc
io
/
izstream.hh
crossmatch.cc
io
/
ozstream.hh
crossmatch.cc
string_util.hh
crossmatch_3e.cc
excn
/
Exceptions.hh
crossmatch_3e.cc
exit.hh
crossmatch_3e.cc
io
/
izstream.hh
crossmatch_3e.cc
io
/
ozstream.hh
crossmatch_3e.cc
string_util.hh
crossmatch_d2.cc
excn
/
Exceptions.hh
crossmatch_d2.cc
io
/
izstream.hh
crossmatch_d2.cc
io
/
ozstream.hh
crossmatch_d2.cc
string_util.hh
CXdock.cc
io
/
izstream.hh
CXdock.cc
io
/
ozstream.hh
cxdock_sheet.cc
io
/
izstream.hh
cxdock_sheet.cc
io
/
ozstream.hh
CXdock_TMP.cc
io
/
izstream.hh
CXdock_TMP.cc
io
/
ozstream.hh
cycgly_bbg8t3a.cc
io
/
izstream.hh
cycgly_bbg8t3a.cc
io
/
ozstream.hh
cycgly_canonical.cc
io
/
izstream.hh
cycgly_canonical.cc
io
/
ozstream.hh
cycgly_superimpose.cc
io
/
izstream.hh
cycgly_superimpose.cc
io
/
ozstream.hh
cycgly_target.cc
io
/
izstream.hh
cycgly_target.cc
io
/
ozstream.hh
cycsamp.cc
io
/
izstream.hh
cycsamp.cc
io
/
ozstream.hh
d3_bpy_linker.cc
io
/
izstream.hh
d3_bpy_linker.cc
io
/
ozstream.hh
design_DL.cc
io
/
izstream.hh
design_DL.cc
vector0.hh
design_DL.cc
vector1.hh
design_frags.cc
string_util.hh
design_frags.cc
vector1.hh
designability_stats.cc
io
/
izstream.hh
designability_stats.cc
io
/
ozstream.hh
disulf_frag_match.cc
io
/
izstream.hh
disulf_frag_match.cc
io
/
ozstream.hh
disulf_frag_search.cc
io
/
izstream.hh
disulf_frag_search.cc
io
/
ozstream.hh
disulf_stat.cc
vector1.hh
dock_asym.cc
io
/
izstream.hh
dock_asym.cc
io
/
ozstream.hh
dubois.cc
io
/
izstream.hh
dubois.cc
io
/
ozstream.hh
dubois_graft.cc
io
/
izstream.hh
dubois_graft.cc
io
/
ozstream.hh
dubois_graft.cc
string_util.hh
dump_res.cc
io
/
izstream.hh
dump_res.cc
io
/
ozstream.hh
dump_res.cc
string_util.hh
dxdock.cc
io
/
izstream.hh
dxdock.cc
io
/
ozstream.hh
dxdock_movie.cc
io
/
izstream.hh
dxdock_movie.cc
io
/
ozstream.hh
flail.cc
io
/
ozstream.hh
fnd_dutton.cc
io
/
izstream.hh
fnd_dutton.cc
io
/
ozstream.hh
for_dkim.cc
vector1.hh
for_tim.cc
io
/
ozstream.hh
frag_util.hh
vector1.hh
FunGroupTK.cc
graph
/
Graph.hh
FunGroupTK.cc
vector0.hh
FunGroupTK.cc
vector1.hh
FunGroupTK_test.cc
graph
/
Graph.hh
FunGroupTK_test.cc
vector1.hh
gen3bpy.cc
io
/
izstream.hh
gen3bpy.cc
io
/
ozstream.hh
gen3bpy.cc
vector0.hh
gen3bpy.cc
vector1.hh
gen_cyc_gly.cc
io
/
izstream.hh
gen_cyc_gly.cc
io
/
ozstream.hh
gen_cyc_gly_cst.cc
io
/
izstream.hh
gen_cyc_gly_cst.cc
io
/
ozstream.hh
gen_d2.cc
graph
/
Graph.hh
gen_d2.cc
io
/
izstream.hh
gen_d2.cc
io
/
ozstream.hh
gen_d2.cc
vector0.hh
gen_d2.cc
vector1.hh
gen_d2_3his_ooc.cc
graph
/
Graph.hh
gen_d2_3his_ooc.cc
io
/
izstream.hh
gen_d2_3his_ooc.cc
io
/
ozstream.hh
gen_d2_4his.cc
graph
/
Graph.hh
gen_d2_4his.cc
io
/
izstream.hh
gen_d2_4his.cc
io
/
ozstream.hh
gen_d2_4his.cc
vector0.hh
gen_d2_4his.cc
vector1.hh
gen_d2_hhhc.cc
graph
/
Graph.hh
gen_d2_hhhc.cc
io
/
izstream.hh
gen_d2_hhhc.cc
io
/
ozstream.hh
gen_d2_hhhc.cc
vector0.hh
gen_d2_hhhc.cc
vector1.hh
gen_disulf_homodimer.cc
graph
/
Graph.hh
gen_disulf_homodimer.cc
io
/
izstream.hh
gen_disulf_homodimer.cc
vector0.hh
gen_disulf_homodimer.cc
vector1.hh
gen_homo_hc.cc
io
/
izstream.hh
gen_homo_hc.cc
vector0.hh
gen_homo_hc.cc
vector1.hh
gen_trimer_disulf.cc
graph
/
Graph.hh
gen_trimer_disulf.cc
io
/
ozstream.hh
gen_trimer_disulf.cc
vector0.hh
gen_trimer_disulf.cc
vector1.hh
gen_xtal_dimer_from_trimer.cc
io
/
ozstream.hh
gen_xtal_dimer_from_trimer.cc
string_constants.hh
gen_xtal_dimer_from_trimer.cc
vector0.hh
gen_xtal_dimer_from_trimer.cc
vector1.hh
genI213.cc
io
/
ozstream.hh
genI213.cc
string_constants.hh
genI213.cc
vector0.hh
genI213.cc
vector1.hh
genI213_2comp.cc
io
/
izstream.hh
genI213_2comp.cc
io
/
ozstream.hh
genI213_2comp.cc
string_constants.hh
genI213_2comp.cc
vector0.hh
genI213_2comp.cc
vector1.hh
genI213_2dsf.cc
io
/
izstream.hh
genI213_2dsf.cc
vector0.hh
genI213_2dsf.cc
vector1.hh
genI213_gensym.cc
io
/
izstream.hh
genI213_gensym.cc
io
/
ozstream.hh
genI213_gensym.cc
string_constants.hh
genI213_nocontacts.cc
io
/
izstream.hh
genI213_nocontacts.cc
io
/
ozstream.hh
genI213_nocontacts.cc
string_constants.hh
genI213_nocontacts.cc
vector0.hh
genI213_nocontacts.cc
vector1.hh
genmatch.cc
io
/
izstream.hh
genmatch.cc
io
/
ozstream.hh
genmatch_3bpy.cc
io
/
izstream.hh
genmatch_3bpy.cc
io
/
ozstream.hh
genmatch_d6_bhhcg.cc
io
/
izstream.hh
genmatch_d6_bhhcg.cc
io
/
ozstream.hh
genmatch_d6_bpy.cc
io
/
izstream.hh
genmatch_d6_bpy.cc
io
/
ozstream.hh
genmatch_m8.cc
io
/
izstream.hh
genmatch_m8.cc
io
/
ozstream.hh
genP23.cc
io
/
izstream.hh
genP23.cc
io
/
ozstream.hh
genP23.cc
string_constants.hh
gensym_3bpy_from_dimer.cc
graph
/
Graph.hh
gensym_3bpy_from_dimer.cc
io
/
izstream.hh
gensym_3bpy_from_dimer.cc
io
/
ozstream.hh
gentetra.cc
io
/
izstream.hh
gentetra.cc
io
/
ozstream.hh
gentetra_bpy_from_znhis.cc
io
/
izstream.hh
gentetra_bpy_from_znhis.cc
vector0.hh
gentetra_bpy_from_znhis.cc
vector1.hh
gentetra_from_trimer.cc
io
/
izstream.hh
gentetra_from_trimer.cc
vector0.hh
gentetra_from_trimer.cc
vector1.hh
getDistConstraints.cc
io
/
izstream.hh
getDistConstraints.cc
io
/
ozstream.hh
gpu
/
gpu_cbdock.cc
io
/
izstream.hh
gpu
/
gpu_cbdock.cc
io
/
ozstream.hh
gpu
/
gpu_linker.cc
io
/
izstream.hh
gpu
/
gpu_linker.cc
io
/
ozstream.hh
gpu
/
gpu_score.cc
io
/
izstream.hh
gpu
/
gpu_score.cc
io
/
ozstream.hh
gpu
/
gpu_test.cc
io
/
izstream.hh
gpu
/
gpu_test.cc
io
/
ozstream.hh
gpu
/
gpu_test_Mxform.cc
io
/
izstream.hh
gpu
/
gpu_test_Mxform.cc
io
/
ozstream.hh
hczndimer.cc
graph
/
Graph.hh
hczndimer.cc
io
/
izstream.hh
hczndimer.cc
io
/
ozstream.hh
helix_assembly.cc
fixedsizearray1.hh
helix_assembly.cc
io
/
izstream.hh
helix_assembly.cc
io
/
ozstream.hh
heterodock.cc
io
/
izstream.hh
heterodock.cc
io
/
ozstream.hh
holes2_training_data.cc
io
/
ozstream.hh
holes_pbpdb.cc
io
/
izstream.hh
holes_pbpdb.cc
io
/
ozstream.hh
holes_test.cc
io
/
izstream.hh
holes_test.cc
string_util.hh
holes_test.cc
vector1.hh
holes_training_data.cc
io
/
izstream.hh
holes_training_data.cc
io
/
ozstream.hh
hubabinitio.cc
io
/
izstream.hh
hubabinitio.cc
io
/
ozstream.hh
hubdenovo.cc
io
/
izstream.hh
hubdenovo.cc
io
/
ozstream.hh
hubdenovo.cc
stream_util.hh
hubfragdesign.cc
io
/
izstream.hh
hubfragdesign.cc
io
/
ozstream.hh
IKFGDB.cc
graph
/
Graph.hh
IKFGDB.cc
vector0.hh
IKFGDB.cc
vector1.hh
isct_test.cc
string_util.hh
isct_test.cc
vector1.hh
make_symmetric_task_test.cc
vector1.hh
match_disulf.cc
io
/
izstream.hh
match_disulf.cc
VirtualBase.hh
minimize_cavities.cc
io
/
izstream.hh
minimize_cavities.cc
pointer
/
owning_ptr.hh
minimize_cavities.cc
string_util.hh
minimize_cavities.cc
vector1.hh
mkresfile_i213.cc
io
/
izstream.hh
mkresfile_i213.cc
io
/
mpistream.hh
mkresfile_i213.cc
io
/
ozstream.hh
mkresfile_i213.cc
string_util.hh
motif_denovo_hb.cc
graph
/
Graph.hh
motif_denovo_hb.cc
io
/
izstream.hh
motif_denovo_hb.cc
io
/
ozstream.hh
motif_hash_util.cc
file
/
file_sys_util.hh
motif_hash_util.cc
fixedsizearray1.hh
motif_hash_util.cc
io
/
izstream.hh
motif_hash_util.cc
io
/
ozstream.hh
nisod.cc
io
/
izstream.hh
nisod.cc
io
/
ozstream.hh
organopv.cc
io
/
izstream.hh
organopv.cc
io
/
ozstream.hh
pack_ddg.cc
vector1.hh
pack_stat_energy.cc
io
/
izstream.hh
pack_stat_energy.cc
vector1.hh
pentcb.cc
io
/
izstream.hh
pentcb.cc
io
/
ozstream.hh
pentcb_design.cc
io
/
izstream.hh
pentcb_design.cc
io
/
ozstream.hh
pentcb_test.cc
io
/
izstream.hh
pentcb_test.cc
io
/
ozstream.hh
pick_normal_sampling.hh
vector1.hh
pilot_packstat.cc
file
/
FileName.hh
pilot_packstat.cc
io
/
izstream.hh
pilot_packstat.cc
io
/
ozstream.hh
pilot_packstat.cc
vector1.hh
print_dunscores.cc
io
/
izstream.hh
print_dunscores.cc
vector1.hh
rblinker.cc
io
/
izstream.hh
rblinker.cc
io
/
ozstream.hh
rblinker2_overlay_bound.cc
io
/
izstream.hh
rblinker2_test.cc
io
/
izstream.hh
rblinker2_test.cc
io
/
ozstream.hh
rescore_i213.cc
io
/
izstream.hh
rescore_i213.cc
io
/
mpistream.hh
rescore_i213.cc
io
/
ozstream.hh
rescore_i213.cc
string_util.hh
rsd_canonical_units.cc
io
/
izstream.hh
rsd_canonical_units.cc
io
/
ozstream.hh
scheme_v0_score.cc
file
/
file_sys_util.hh
scheme_v0_score.cc
io
/
izstream.hh
scheme_v0_score.cc
io
/
ozstream.hh
score_pdbs.cc
vector1.hh
sf4_hash.cc
io
/
izstream.hh
sf4_hash.cc
io
/
ozstream.hh
sicdock.cc
io
/
izstream.hh
sicdock.cc
io
/
ozstream.hh
smhybrid.cc
io
/
izstream.hh
smhybrid.cc
io
/
ozstream.hh
smhybrid.cc
string_constants.hh
sphere_hierarchy.cc
io
/
izstream.hh
sphere_hierarchy.cc
io
/
ozstream.hh
SphereSample.hh
vector1.hh
spiro.cc
io
/
izstream.hh
spiro.cc
io
/
mpistream.hh
symdock_enum_3_1.cc
io
/
ozstream.hh
symdock_enum_3_1.cc
string_util.hh
symdock_enum_3_1.cc
vector1.hh
symdock_hybrid.cc
vector1.hh
symdock_hybrid_cc3.cc
vector1.hh
tcdock.cc
file
/
file_sys_util.hh
tcdock.cc
io
/
izstream.hh
tcdock.cc
io
/
ozstream.hh
tcdock.cc
string_util.hh
tcdock.cc
vector1.hh
test_ikrs.cc
graph
/
Graph.hh
test_ikrs.cc
io
/
izstream.hh
test_ikrs.cc
io
/
ozstream.hh
test_ikrs.cc
vector0.hh
test_ikrs.cc
vector1.hh
test_ikrs2.cc
graph
/
Graph.hh
test_ikrs2.cc
io
/
izstream.hh
test_ikrs2.cc
io
/
ozstream.hh
test_ikrs_flymake.cc
io
/
izstream.hh
test_ikrs_flymake.cc
io
/
ozstream.hh
test_kc.cc
io
/
ozstream.hh
test_kc.cc
vector1.hh
test_leerichards.cc
file
/
file_sys_util.hh
test_leerichards.cc
io
/
izstream.hh
test_leerichards.cc
io
/
ozstream.hh
test_string.cc
string_util.hh
ward_design.cc
io
/
izstream.hh
ward_design.cc
io
/
ozstream.hh
ward_design.cc
string_util.hh
will_mutalyze.cc
io
/
izstream.hh
will_mutalyze.cc
io
/
mpistream.hh
will_mutalyze.cc
io
/
ozstream.hh
will_mutalyze.cc
string_util.hh
willmatch_2d6_bhe.cc
io
/
izstream.hh
willmatch_2d6_bhe.cc
io
/
ozstream.hh
willmatch_chorismate.cc
io
/
izstream.hh
willmatch_chorismate.cc
io
/
ozstream.hh
willmatch_chorismate.cc
vector1.hh
willmatch_d6_bpy.cc
io
/
izstream.hh
willmatch_d6_bpy.cc
io
/
ozstream.hh
willmatch_d6_bpy.cc
vector0.hh
willmatch_d6_bpy.cc
vector1.hh
yeates_align.cc
io
/
ozstream.hh
yeates_align.cc
vector1.hh
query_lang
/
filter.cc
pointer
/
owning_ptr.hh
query_lang
/
metric.cc
pointer
/
owning_ptr.hh
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