brunette → basic Relation

File in src/apps/pilot/brunette	Includes file in src/basic
abego_predict.cc	options / keys / in.OptionKeys.gen.hh
abego_predict.cc	options / option.hh
abego_predict.cc	Tracer.hh
aln_to_disulf.cc	options / keys / cm.OptionKeys.gen.hh
aln_to_disulf.cc	options / keys / in.OptionKeys.gen.hh
aln_to_disulf.cc	options / option.hh
aln_to_disulf.cc	options / keys / out.OptionKeys.gen.hh
aln_to_disulf.cc	Tracer.hh
armEval.cc	options / keys / holes.OptionKeys.gen.hh
armEval.cc	database / open.hh
armEval.cc	options / option.hh
armEval.cc	options / keys / out.OptionKeys.gen.hh
armEval.cc	Tracer.hh
calc_ssm_energies_with_structure_profile.cc	options / option.hh
calc_ssm_energies_with_structure_profile.cc	options / option_macros.hh
calc_ssm_energies_with_structure_profile.cc	options / keys / packing.OptionKeys.gen.hh
calc_ssm_energies_with_structure_profile.cc	Tracer.hh
calcFractionFolded.cc	options / keys / in.OptionKeys.gen.hh
calcFractionFolded.cc	options / option.hh
calcFractionFolded.cc	options / keys / out.OptionKeys.gen.hh
calcFractionFolded.cc	Tracer.hh
contact_map_from_homologs.cc	options / keys / cm.OptionKeys.gen.hh
contact_map_from_homologs.cc	options / keys / in.OptionKeys.gen.hh
contact_map_from_homologs.cc	options / option.hh
contact_map_from_homologs.cc	options / keys / out.OptionKeys.gen.hh
contact_map_from_homologs.cc	options / keys / run.OptionKeys.gen.hh
contact_map_from_homologs.cc	Tracer.hh
convertFragmentType.cc	options / option_macros.hh
convertFragmentType.cc	options / keys / OptionKeys.hh
dumpPhiPsiStats.cc	options / option.hh
dumpPhiPsiStats.cc	options / keys / out.OptionKeys.gen.hh
dumpPhiPsiStats.cc	Tracer.hh
evalFullLength.cc	options / keys / holes.OptionKeys.gen.hh
evalFullLength.cc	database / open.hh
evalFullLength.cc	options / option.hh
evalFullLength.cc	options / keys / out.OptionKeys.gen.hh
evalFullLength.cc	options / keys / remodel.OptionKeys.gen.hh
evalFullLength.cc	Tracer.hh
evalRepeats.cc	options / keys / holes.OptionKeys.gen.hh
evalRepeats.cc	database / open.hh
evalRepeats.cc	options / option.hh
evalRepeats.cc	options / keys / out.OptionKeys.gen.hh
evalRepeats.cc	options / keys / remodel.OptionKeys.gen.hh
evalRepeats.cc	Tracer.hh
extractNativeRepeats.cc	database / open.hh
extractNativeRepeats.cc	options / option.hh
extractNativeRepeats.cc	options / keys / out.OptionKeys.gen.hh
extractNativeRepeats.cc	Tracer.hh
filterAlignments.cc	options / keys / cm.OptionKeys.gen.hh
filterAlignments.cc	options / keys / edensity.OptionKeys.gen.hh
filterAlignments.cc	options / keys / in.OptionKeys.gen.hh
filterAlignments.cc	options / option.hh
filterAlignments.cc	options / keys / out.OptionKeys.gen.hh
filterAlignments.cc	options / keys / run.OptionKeys.gen.hh
filterAlignments.cc	Tracer.hh
filterAlignments.cc	options / util.hh
filterImperfectAln.cc	options / keys / cm.OptionKeys.gen.hh
filterImperfectAln.cc	options / keys / in.OptionKeys.gen.hh
filterImperfectAln.cc	options / option.hh
filterImperfectAln.cc	options / keys / out.OptionKeys.gen.hh
filterImperfectAln.cc	options / keys / run.OptionKeys.gen.hh
filterImperfectAln.cc	Tracer.hh
filterImperfectAln.cc	options / util.hh
findNaturallyOccuringAlphaRepeats.cc	options / keys / holes.OptionKeys.gen.hh
findNaturallyOccuringAlphaRepeats.cc	database / open.hh
findNaturallyOccuringAlphaRepeats.cc	options / option.hh
findNaturallyOccuringAlphaRepeats.cc	options / keys / out.OptionKeys.gen.hh
findNaturallyOccuringAlphaRepeats.cc	Tracer.hh
fragments_to_ss.cc	options / option_macros.hh
fragments_to_ss.cc	options / keys / OptionKeys.hh
hle_predict.cc	options / keys / in.OptionKeys.gen.hh
hle_predict.cc	options / option.hh
hle_predict.cc	Tracer.hh
minimalCstHomology.cc	options / keys / cm.OptionKeys.gen.hh
minimalCstHomology.cc	options / keys / in.OptionKeys.gen.hh
minimalCstHomology.cc	options / option.hh
minimalCstHomology.cc	options / keys / out.OptionKeys.gen.hh
minimalCstHomology.cc	options / keys / relax.OptionKeys.gen.hh
minimalCstHomology.cc	options / keys / run.OptionKeys.gen.hh
minimalCstHomology.cc	Tracer.hh
minimalCstHomology.cc	options / util.hh
minimalCstRelax.cc	options / keys / cm.OptionKeys.gen.hh
minimalCstRelax.cc	options / keys / in.OptionKeys.gen.hh
minimalCstRelax.cc	options / option.hh
minimalCstRelax.cc	options / keys / out.OptionKeys.gen.hh
minimalCstRelax.cc	options / keys / relax.OptionKeys.gen.hh
minimalCstRelax.cc	options / keys / run.OptionKeys.gen.hh
minimalCstRelax.cc	Tracer.hh
minimalCstRelax.cc	options / util.hh
outputAbego.cc	Tracer.hh
outputLayerDesignBurial.cc	Tracer.hh
outputRama.cc	Tracer.hh
outputSasa.cc	Tracer.hh
predictedCstFilter.cc	options / after_opts.hh
predictedCstFilter.cc	basic.hh
predictedCstFilter.cc	options / keys / cm.OptionKeys.gen.hh
predictedCstFilter.cc	options / keys / in.OptionKeys.gen.hh
predictedCstFilter.cc	options / option.hh
predictedCstFilter.cc	options / keys / run.OptionKeys.gen.hh
predictedCstFilter.cc	Tracer.hh
predictedCstFilter.cc	options / util.hh
repeat_dock.cc	options / keys / in.OptionKeys.gen.hh
repeat_dock.cc	options / option.hh
repeat_dock.cc	options / keys / out.OptionKeys.gen.hh
repeat_dock.cc	Tracer.hh
silents_to_ss.cc	options / option_macros.hh
silents_to_ss.cc	options / keys / OptionKeys.hh
tj_util.hh	options / keys / cm.OptionKeys.gen.hh
tj_util.hh	options / keys / in.OptionKeys.gen.hh
tj_util.hh	options / option.hh
tj_util.hh	Tracer.hh
tj_util.hh	options / util.hh
unalignedEvaluate.cc	options / keys / cm.OptionKeys.gen.hh
unalignedEvaluate.cc	options / keys / edensity.OptionKeys.gen.hh
unalignedEvaluate.cc	options / keys / in.OptionKeys.gen.hh
unalignedEvaluate.cc	options / option.hh
unalignedEvaluate.cc	options / keys / out.OptionKeys.gen.hh
unalignedEvaluate.cc	options / keys / run.OptionKeys.gen.hh
unalignedEvaluate.cc	Tracer.hh
unalignedEvaluate.cc	options / util.hh