brunette → utility Relation

File in src/apps/pilot/brunette	Includes file in src/utility
abego_predict.cc	io / ozstream.hh
aln_to_disulf.cc	exit.hh
aln_to_disulf.cc	file / file_sys_util.hh
aln_to_disulf.cc	io / ozstream.hh
aln_to_disulf.cc	string_util.hh
aln_to_disulf.cc	vector1.hh
armEval.cc	io / ozstream.hh
armEval.cc	vector1.hh
calc_ssm_energies_with_structure_profile.cc	file / FileName.fwd.hh
calc_ssm_energies_with_structure_profile.cc	vector1.hh
calcFractionFolded.cc	io / ozstream.hh
calcFractionFolded.cc	vector1.hh
cluster_alns.cc	excn / Exceptions.hh
contact_map_from_homologs.cc	exit.hh
contact_map_from_homologs.cc	file / file_sys_util.hh
contact_map_from_homologs.cc	file / FileName.hh
contact_map_from_homologs.cc	io / izstream.hh
contact_map_from_homologs.cc	io / ozstream.hh
contact_map_from_homologs.cc	string_util.hh
dumpPhiPsiStats.cc	io / ozstream.hh
dumpPhiPsiStats.cc	vector1.hh
evalFullLength.cc	io / ozstream.hh
evalFullLength.cc	vector1.hh
evalRepeats.cc	io / ozstream.hh
evalRepeats.cc	vector1.hh
extractNativeRepeats.cc	io / ozstream.hh
extractNativeRepeats.cc	vector1.hh
filterAlignments.cc	options / keys / BooleanOptionKey.fwd.hh
filterAlignments.cc	options / keys / BooleanOptionKey.hh
filterAlignments.cc	exit.hh
filterAlignments.cc	file / file_sys_util.hh
filterAlignments.cc	file / FileName.hh
filterAlignments.cc	options / keys / FileOptionKey.fwd.hh
filterAlignments.cc	options / keys / FileOptionKey.hh
filterAlignments.cc	io / izstream.hh
filterAlignments.cc	io / ozstream.hh
filterAlignments.cc	string_util.hh
filterImperfectAln.cc	exit.hh
filterImperfectAln.cc	file / file_sys_util.hh
filterImperfectAln.cc	file / FileName.hh
filterImperfectAln.cc	options / keys / FileOptionKey.fwd.hh
filterImperfectAln.cc	options / keys / FileOptionKey.hh
filterImperfectAln.cc	options / keys / FileVectorOptionKey.fwd.hh
filterImperfectAln.cc	options / keys / FileVectorOptionKey.hh
filterImperfectAln.cc	io / izstream.hh
filterImperfectAln.cc	io / ozstream.hh
filterImperfectAln.cc	string_util.hh
findNaturallyOccuringAlphaRepeats.cc	io / ozstream.hh
findNaturallyOccuringAlphaRepeats.cc	vector1.hh
fragments_to_ss.cc	io / ozstream.hh
hle_predict.cc	io / ozstream.hh
minimalCstHomology.cc	options / keys / BooleanOptionKey.fwd.hh
minimalCstHomology.cc	options / keys / BooleanOptionKey.hh
minimalCstHomology.cc	exit.hh
minimalCstHomology.cc	file / file_sys_util.hh
minimalCstHomology.cc	file / FileName.hh
minimalCstHomology.cc	options / keys / FileOptionKey.fwd.hh
minimalCstHomology.cc	options / keys / FileOptionKey.hh
minimalCstHomology.cc	options / keys / FileVectorOptionKey.fwd.hh
minimalCstHomology.cc	options / keys / FileVectorOptionKey.hh
minimalCstHomology.cc	io / izstream.hh
minimalCstHomology.cc	io / ozstream.hh
minimalCstHomology.cc	string_util.hh
minimalCstRelax.cc	exit.hh
minimalCstRelax.cc	file / file_sys_util.hh
minimalCstRelax.cc	file / FileName.hh
minimalCstRelax.cc	options / keys / FileOptionKey.fwd.hh
minimalCstRelax.cc	options / keys / FileOptionKey.hh
minimalCstRelax.cc	options / keys / FileVectorOptionKey.fwd.hh
minimalCstRelax.cc	options / keys / FileVectorOptionKey.hh
minimalCstRelax.cc	io / izstream.hh
minimalCstRelax.cc	io / ozstream.hh
minimalCstRelax.cc	string_util.hh
outputAbego.cc	excn / Exceptions.hh
outputAbego.cc	io / ozstream.hh
outputAbego.cc	vector1.hh
outputLayerDesignBurial.cc	io / ozstream.hh
outputLayerDesignBurial.cc	vector1.hh
outputRama.cc	io / ozstream.hh
outputRama.cc	vector1.hh
outputSasa.cc	io / ozstream.hh
outputSasa.cc	vector1.hh
predictedCstFilter.cc	vector1.hh
repeat_dock.cc	io / ozstream.hh
repeat_dock.cc	string_constants.hh
repeat_dock.cc	vector1.hh
silents_to_ss.cc	io / ozstream.hh
tj_util.hh	file / file_sys_util.hh
tj_util.hh	file / FileName.hh
tj_util.hh	string_util.hh
unalignedEvaluate.cc	options / keys / BooleanOptionKey.fwd.hh
unalignedEvaluate.cc	options / keys / BooleanOptionKey.hh
unalignedEvaluate.cc	exit.hh
unalignedEvaluate.cc	file / file_sys_util.hh
unalignedEvaluate.cc	file / FileName.hh
unalignedEvaluate.cc	options / keys / FileOptionKey.fwd.hh
unalignedEvaluate.cc	options / keys / FileOptionKey.hh
unalignedEvaluate.cc	io / izstream.hh
unalignedEvaluate.cc	io / ozstream.hh
unalignedEvaluate.cc	string_util.hh