Rosetta

james → basic Relation

File in src/apps/pilot/jamesIncludes file in src/basic
add_ligand.ccoptions / after_opts.hh
add_ligand.ccoptions / keys / in.OptionKeys.gen.hh
add_ligand.ccTracer.hh
add_ligand.ccoptions / util.hh
analyze_casp9.ccoptions / keys / in.OptionKeys.gen.hh
analyze_casp9.ccoptions / option.hh
angle_recovery_stats.ccoptions / keys / in.OptionKeys.gen.hh
angle_recovery_stats.ccoptions / option.hh
angles.ccoptions / keys / in.OptionKeys.gen.hh
angles.ccoptions / option.hh
anneal_align.ccTracer.hh
assemble_domains_jd2.ccoptions / keys / cm.OptionKeys.gen.hh
assemble_domains_jd2.ccoptions / keys / loops.OptionKeys.gen.hh
assemble_domains_jd2.ccoptions / option.hh
basic_thread.ccoptions / keys / cm.OptionKeys.gen.hh
basic_thread.ccoptions / keys / in.OptionKeys.gen.hh
basic_thread.ccoptions / keys / james.OptionKeys.gen.hh
basic_thread.ccoptions / option.hh
basic_thread.ccTracer.hh
build_template.ccoptions / after_opts.hh
build_template.ccbasic.hh
build_template.ccoptions / keys / constraints.OptionKeys.gen.hh
build_template.ccoptions / keys / in.OptionKeys.gen.hh
build_template.ccoptions / option.hh
build_template.ccTracer.hh
burial.ccdatabase / open.hh
burial.ccoptions / keys / OptionKeys.hh
ca_build.ccoptions / keys / frags.OptionKeys.gen.hh
ca_build.ccoptions / keys / in.OptionKeys.gen.hh
ca_build.ccoptions / option.hh
ca_build.ccoptions / keys / out.OptionKeys.gen.hh
ca_build.ccprof.hh
ca_build.ccTracer.hh
casp9_superdev.ccoptions / keys / in.OptionKeys.gen.hh
casp9_superdev.ccoptions / option.hh
casp9_superdev.ccoptions / keys / run.OptionKeys.gen.hh
compare_features.ccoptions / keys / in.OptionKeys.gen.hh
compare_features.ccoptions / option.hh
compare_features.ccprof.hh
constraints_matrix.ccoptions / keys / in.OptionKeys.gen.hh
constraints_matrix.ccoptions / option.hh
constraints_matrix.ccTracer.hh
constraints_viewer.ccoptions / after_opts.hh
constraints_viewer.ccbasic.hh
constraints_viewer.ccoptions / keys / in.OptionKeys.gen.hh
constraints_viewer.ccoptions / keys / james.OptionKeys.gen.hh
constraints_viewer.ccoptions / option.hh
constraints_viewer.ccoptions / keys / out.OptionKeys.gen.hh
constraints_viewer.ccTracer.hh
copy_hack.ccoptions / keys / in.OptionKeys.gen.hh
copy_hack.ccoptions / option.hh
cs_align.ccoptions / keys / cm.OptionKeys.gen.hh
cs_align.ccoptions / keys / in.OptionKeys.gen.hh
cs_align.ccoptions / keys / james.OptionKeys.gen.hh
cs_align.ccoptions / option.hh
cs_align.ccoptions / keys / out.OptionKeys.gen.hh
cs_align.ccTracer.hh
cst_func.ccoptions / after_opts.hh
cst_func.ccbasic.hh
cst_func.ccoptions / keys / constraints.OptionKeys.gen.hh
cst_func.ccoptions / keys / in.OptionKeys.gen.hh
cst_func.ccoptions / option.hh
cst_func.ccTracer.hh
cst_quality.ccoptions / keys / in.OptionKeys.gen.hh
cst_quality.ccoptions / option.hh
cst_quality.ccoptions / keys / out.OptionKeys.gen.hh
cst_quality.ccTracer.hh
density_grid.ccoptions / after_opts.hh
density_grid.ccoptions / keys / cm.OptionKeys.gen.hh
density_grid.ccoptions / keys / in.OptionKeys.gen.hh
density_grid.ccoptions / keys / james.OptionKeys.gen.hh
density_grid.ccdatabase / open.hh
density_grid.ccoptions / option.hh
density_grid.ccprof.hh
density_grid.ccTracer.hh
design_profile.ccoptions / keys / james.OptionKeys.gen.hh
design_profile.ccoptions / option.hh
design_profile.ccoptions / util.hh
distances.ccoptions / keys / constraints.OptionKeys.gen.hh
distances.ccoptions / keys / in.OptionKeys.gen.hh
distances.ccoptions / option.hh
dp_align.ccoptions / keys / in.OptionKeys.gen.hh
dp_align.ccoptions / option.hh
dp_align.ccTracer.hh
exhaustive_align.ccoptions / keys / cm.OptionKeys.gen.hh
exhaustive_align.ccoptions / keys / in.OptionKeys.gen.hh
exhaustive_align.ccoptions / option.hh
exhaustive_align.ccoptions / keys / out.OptionKeys.gen.hh
fast_cm.ccoptions / keys / cm.OptionKeys.gen.hh
fast_cm.ccoptions / keys / in.OptionKeys.gen.hh
fast_cm.ccoptions / option.hh
fast_cm.ccoptions / keys / out.OptionKeys.gen.hh
filter_sequences.ccoptions / keys / in.OptionKeys.gen.hh
filter_sequences.ccoptions / option.hh
filter_sequences.ccprof.hh
filter_sequences.ccTracer.hh
homolog_cst.hhoptions / keys / constraints.OptionKeys.gen.hh
homolog_cst.hhoptions / option.hh
hybrid.ccoptions / keys / cm.OptionKeys.gen.hh
hybrid.ccoptions / keys / in.OptionKeys.gen.hh
hybrid.ccoptions / option.hh
hybrid.ccoptions / keys / out.OptionKeys.gen.hh
hybrid.ccTracer.hh
james_util.hhdatabase / open.hh
jcluster.ccoptions / keys / in.OptionKeys.gen.hh
jcluster.ccoptions / option.hh
jdock.ccoptions / keys / in.OptionKeys.gen.hh
jdock.ccoptions / keys / james.OptionKeys.gen.hh
jdock.ccoptions / option.hh
jidealize.ccoptions / option.hh
jidealize.ccoptions / option_macros.hh
jrelax.ccoptions / keys / constraints.OptionKeys.gen.hh
jrelax.ccoptions / keys / in.OptionKeys.gen.hh
jrelax.ccoptions / option.hh
jrelax.ccoptions / keys / relax.OptionKeys.gen.hh
jscore.ccoptions / keys / constraints.OptionKeys.gen.hh
jscore.ccoptions / option.hh
jseq.ccoptions / keys / in.OptionKeys.gen.hh
jseq.ccoptions / option.hh
jseq.ccoptions / keys / out.OptionKeys.gen.hh
kdtree_disulf.ccoptions / keys / james.OptionKeys.gen.hh
kdtree_disulf.ccdatabase / open.hh
kdtree_disulf.ccoptions / option.hh
kdtree_disulf.ccoptions / keys / robert.OptionKeys.gen.hh
make_artificial_centroids.ccoptions / keys / in.OptionKeys.gen.hh
make_artificial_centroids.ccoptions / option.hh
make_artificial_centroids.ccprof.hh
make_profile.ccoptions / keys / in.OptionKeys.gen.hh
make_profile.ccoptions / option.hh
make_profile.ccoptions / keys / out.OptionKeys.gen.hh
make_profile.ccprof.hh
make_profile.ccTracer.hh
mammoth_hack.ccoptions / after_opts.hh
mammoth_hack.ccdatacache / BasicDataCache.fwd.hh
mammoth_hack.ccoptions / keys / in.OptionKeys.gen.hh
mammoth_hack.ccoptions / keys / james.OptionKeys.gen.hh
mammoth_hack.ccMetricValue.fwd.hh
mammoth_hack.ccoptions / option.hh
mammoth_hack.ccoptions / keys / OptionKeys.hh
mammoth_hack.ccoptions / keys / out.OptionKeys.gen.hh
mammoth_hack.ccTracer.fwd.hh
mammoth_hack.ccTracer.hh
medal_test.ccoptions / after_opts.hh
medal_test.ccbasic.hh
medal_test.ccoptions / keys / in.OptionKeys.gen.hh
medal_test.ccoptions / keys / james.OptionKeys.gen.hh
medal_test.ccoptions / option.hh
medal_test.ccoptions / util.hh
min_cst.ccoptions / after_opts.hh
min_cst.ccbasic.hh
min_cst.ccoptions / keys / in.OptionKeys.gen.hh
min_cst.ccoptions / keys / james.OptionKeys.gen.hh
min_cst.ccoptions / option.hh
min_cst.ccTracer.hh
min_cst.ccoptions / util.hh
model_quality.ccdatacache / BasicDataCache.fwd.hh
model_quality.ccoptions / keys / constraints.OptionKeys.gen.hh
model_quality.ccoptions / keys / in.OptionKeys.gen.hh
model_quality.ccoptions / keys / james.OptionKeys.gen.hh
model_quality.ccMetricValue.fwd.hh
model_quality.ccoptions / option.hh
model_quality.ccoptions / keys / OptionKeys.hh
model_quality.ccoptions / keys / out.OptionKeys.gen.hh
model_quality.ccTracer.fwd.hh
per_residue_features.ccoptions / keys / OptionKeys.hh
phi_hack.ccoptions / keys / in.OptionKeys.gen.hh
phi_hack.ccoptions / keys / james.OptionKeys.gen.hh
phi_hack.ccoptions / option.hh
phi_hack.ccoptions / keys / out.OptionKeys.gen.hh
pick_frags.ccoptions / keys / frags.OptionKeys.gen.hh
pick_frags.ccoptions / keys / in.OptionKeys.gen.hh
pick_frags.ccoptions / keys / james.OptionKeys.gen.hh
pick_frags.ccoptions / option.hh
pick_frags.ccoptions / keys / out.OptionKeys.gen.hh
pick_frags.ccprof.hh
pick_frags.ccTracer.hh
prof_search.ccoptions / keys / frags.OptionKeys.gen.hh
prof_search.ccoptions / keys / in.OptionKeys.gen.hh
prof_search.ccoptions / option.hh
prof_search.ccoptions / keys / out.OptionKeys.gen.hh
prof_search.ccTracer.hh
remap_aln.ccoptions / keys / cm.OptionKeys.gen.hh
remap_aln.ccoptions / keys / in.OptionKeys.gen.hh
remap_aln.ccoptions / option.hh
remap_aln.ccoptions / keys / out.OptionKeys.gen.hh
remap_aln.ccTracer.fwd.hh
sc_interaction.ccbasic.hh
sc_interaction.ccoptions / keys / in.OptionKeys.gen.hh
sc_interaction.ccoptions / keys / james.OptionKeys.gen.hh
sc_interaction.ccoptions / option.hh
sc_interaction.ccTracer.hh
sc_interaction.ccoptions / util.hh
score_silent_cst.ccoptions / keys / in.OptionKeys.gen.hh
score_silent_cst.ccoptions / option.hh
score_silent_cst.ccoptions / keys / out.OptionKeys.gen.hh
seqdb_stats.ccoptions / keys / in.OptionKeys.gen.hh
seqdb_stats.ccoptions / option.hh
seqdb_stats.ccprof.hh
seqdb_stats.ccTracer.hh
silent_cst_quality.ccoptions / keys / in.OptionKeys.gen.hh
silent_cst_quality.ccoptions / option.hh
silent_cst_quality.ccoptions / keys / out.OptionKeys.gen.hh
silent_cst_quality.ccTracer.hh
simple_cm.ccoptions / keys / frags.OptionKeys.gen.hh
simple_cm.ccoptions / keys / in.OptionKeys.gen.hh
simple_cm.ccoptions / option.hh
simple_cm.ccoptions / keys / out.OptionKeys.gen.hh
simple_cm.ccprof.hh
simple_cm.ccTracer.hh
sparta_superdev.ccoptions / keys / evaluation.OptionKeys.gen.hh
sparta_superdev.ccoptions / keys / in.OptionKeys.gen.hh
sparta_superdev.ccoptions / option.hh
sparta_superdev.ccoptions / keys / run.OptionKeys.gen.hh
super.ccoptions / keys / in.OptionKeys.gen.hh
super.ccoptions / option.hh
superdev.ccoptions / keys / in.OptionKeys.gen.hh
superdev.ccoptions / option.hh
superdev.ccoptions / keys / run.OptionKeys.gen.hh
thread_fast.ccoptions / keys / cm.OptionKeys.gen.hh
thread_fast.ccoptions / keys / in.OptionKeys.gen.hh
thread_fast.ccoptions / option.hh
thread_fast.ccoptions / keys / out.OptionKeys.gen.hh
thread_fast.ccTracer.hh
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