Rosetta

james → utility Relation

File in src/apps/pilot/jamesIncludes file in src/utility
add_ligand.ccexcn / Exceptions.hh
analyze_casp9.ccexcn / Exceptions.hh
analyze_casp9.ccvector1.hh
angle_recovery_stats.ccexcn / Exceptions.hh
angle_recovery_stats.ccvector1.hh
angles.ccexcn / Exceptions.hh
angles.ccvector1.hh
anneal_align.ccexcn / Exceptions.hh
anneal_align.ccexit.hh
anneal_align.ccio / izstream.hh
anneal_align.ccvector1.hh
assemble_domains_jd2.ccexcn / Exceptions.hh
assemble_domains_jd2.ccvector1.hh
basic_thread.ccexcn / Exceptions.hh
basic_thread.ccstring_util.hh
basic_thread.ccvector1.hh
boost_hacks.ccexcn / Exceptions.hh
boost_hacks.ccvector1.hh
build_template.ccexcn / Exceptions.hh
build_template.ccfile / file_sys_util.hh
build_template.ccfile / FileName.hh
build_template.ccvector1.hh
burial.ccexcn / Exceptions.hh
burial.ccvector1.hh
ca_build.ccexcn / Exceptions.hh
ca_build.ccfile / file_sys_util.hh
ca_build.ccfile / FileName.hh
ca_build.ccio / izstream.hh
ca_build.ccio / ozstream.hh
ca_build.ccvector1.hh
cartesian.ccexcn / Exceptions.hh
cartesian.ccvector1.hh
casp9_superdev.ccexcn / Exceptions.hh
casp9_superdev.ccio / ozstream.hh
casp9_superdev.ccvector1.hh
compare_features.ccexcn / Exceptions.hh
compare_features.ccvector1.hh
constraints_matrix.ccexcn / Exceptions.hh
constraints_matrix.ccvector1.hh
constraints_viewer.ccexcn / Exceptions.hh
constraints_viewer.ccexit.hh
constraints_viewer.ccfile / file_sys_util.hh
constraints_viewer.ccio / izstream.hh
constraints_viewer.ccio / ozstream.hh
constraints_viewer.ccvector1.hh
copy_hack.ccexcn / Exceptions.hh
cs_align.ccexcn / Exceptions.hh
cs_align.ccfile / file_sys_util.hh
cs_align.ccfile / FileName.hh
cs_align.ccio / izstream.hh
cs_align.ccio / ozstream.hh
cs_align.ccvector1.hh
cst_func.ccexcn / Exceptions.hh
cst_func.ccexit.hh
cst_func.ccfile / file_sys_util.hh
cst_func.ccio / ozstream.hh
cst_func.ccvector1.hh
cst_quality.ccexcn / Exceptions.hh
cst_quality.ccnumbers.hh
cst_quality.ccvector1.hh
density_grid.ccexcn / Exceptions.hh
density_grid.ccfile / FileName.hh
density_grid.ccio / izstream.hh
density_grid.ccio / ozstream.hh
density_grid.ccstring_util.hh
density_grid.ccvector1.hh
design_profile.ccexcn / Exceptions.hh
distances.ccexcn / Exceptions.hh
distances.ccvector1.hh
dp_align.ccexcn / Exceptions.hh
dp_align.ccfile / FileName.hh
dp_align.ccvector1.hh
exhaustive_align.ccexcn / Exceptions.hh
exhaustive_align.ccfile / FileName.hh
exhaustive_align.ccio / ozstream.hh
exhaustive_align.ccvector1.hh
fast_cm.ccexcn / Exceptions.hh
filter_sequences.ccexcn / Exceptions.hh
filter_sequences.ccfile / file_sys_util.hh
filter_sequences.ccfile / FileName.hh
filter_sequences.ccio / izstream.hh
filter_sequences.ccio / ozstream.hh
filter_sequences.ccvector1.hh
hybrid.ccexcn / Exceptions.hh
hybrid.ccexit.hh
hybrid.ccfile / file_sys_util.hh
hybrid.ccfile / FileName.hh
hybrid.ccio / mpistream.hh
hybrid.ccio / ozstream.hh
hybrid.ccstring_util.hh
hybrid.ccvector1.hh
james_util.hhfile / file_sys_util.hh
james_util.hhfile / FileName.hh
james_util.hhio / izstream.hh
james_util.hhvector1.hh
jcluster.ccexcn / Exceptions.hh
jcluster.ccvector1.hh
jdock.ccexcn / Exceptions.hh
jidealize.ccexcn / Exceptions.hh
jrelax.ccexcn / Exceptions.hh
jscore.ccexcn / Exceptions.hh
jseq.ccexcn / Exceptions.hh
jseq.ccvector1.hh
kdtree_disulf.ccexcn / Exceptions.hh
kdtree_disulf.ccio / izstream.hh
kdtree_disulf.ccio / ozstream.hh
kdtree_disulf.ccvector1.hh
make_artificial_centroids.ccexcn / Exceptions.hh
make_artificial_centroids.ccvector1.hh
make_profile.ccexcn / Exceptions.hh
make_profile.ccfile / file_sys_util.hh
make_profile.ccfile / FileName.hh
make_profile.ccio / izstream.hh
make_profile.ccio / ozstream.hh
make_profile.ccvector1.hh
mammoth_hack.ccpointer / access_ptr.hh
mammoth_hack.ccoptions / keys / all.hh
mammoth_hack.ccoptions / AnyOption.fwd.hh
mammoth_hack.ccoptions / AnyOption.hh
mammoth_hack.ccoptions / keys / AnyOptionKey.fwd.hh
mammoth_hack.ccoptions / keys / AnyOptionKey.hh
mammoth_hack.ccoptions / AnyVectorOption.fwd.hh
mammoth_hack.ccoptions / AnyVectorOption.hh
mammoth_hack.ccoptions / keys / AnyVectorOptionKey.fwd.hh
mammoth_hack.ccoptions / keys / AnyVectorOptionKey.hh
mammoth_hack.cckeys / AutoKey.fwd.hh
mammoth_hack.cckeys / AutoKey.hh
mammoth_hack.ccoptions / BooleanOption.fwd.hh
mammoth_hack.ccoptions / BooleanOption.hh
mammoth_hack.ccoptions / keys / BooleanOptionKey.fwd.hh
mammoth_hack.ccoptions / keys / BooleanOptionKey.hh
mammoth_hack.ccoptions / BooleanVectorOption.fwd.hh
mammoth_hack.ccoptions / BooleanVectorOption.hh
mammoth_hack.ccoptions / keys / BooleanVectorOptionKey.fwd.hh
mammoth_hack.ccoptions / keys / BooleanVectorOptionKey.hh
mammoth_hack.ccBound.fwd.hh
mammoth_hack.ccBound.hh
mammoth_hack.ccsignals / BufferedSignalHub.fwd.hh
mammoth_hack.ccsignals / BufferedSignalHub.hh
mammoth_hack.ccdown_cast.hh
mammoth_hack.ccexcn / Exceptions.hh
mammoth_hack.ccexit.hh
mammoth_hack.ccfile / FileName.fwd.hh
mammoth_hack.ccfile / FileName.hh
mammoth_hack.ccoptions / FileOption.fwd.hh
mammoth_hack.ccoptions / FileOption.hh
mammoth_hack.ccoptions / keys / FileOptionKey.fwd.hh
mammoth_hack.ccoptions / keys / FileOptionKey.hh
mammoth_hack.ccoptions / FileVectorOption.fwd.hh
mammoth_hack.ccoptions / FileVectorOption.hh
mammoth_hack.ccoptions / keys / FileVectorOptionKey.fwd.hh
mammoth_hack.ccoptions / keys / FileVectorOptionKey.hh
mammoth_hack.ccoptions / IntegerOption.fwd.hh
mammoth_hack.ccoptions / IntegerOption.hh
mammoth_hack.ccoptions / keys / IntegerOptionKey.fwd.hh
mammoth_hack.ccoptions / keys / IntegerOptionKey.hh
mammoth_hack.ccoptions / IntegerVectorOption.fwd.hh
mammoth_hack.ccoptions / IntegerVectorOption.hh
mammoth_hack.ccoptions / keys / IntegerVectorOptionKey.fwd.hh
mammoth_hack.ccoptions / keys / IntegerVectorOptionKey.hh
mammoth_hack.ccio / izstream.fwd.hh
mammoth_hack.cckeys / Key.fwd.hh
mammoth_hack.cckeys / Key.hh
mammoth_hack.cckeys / Key2Tuple.fwd.hh
mammoth_hack.cckeys / Key2Tuple.hh
mammoth_hack.cckeys / Key3Tuple.fwd.hh
mammoth_hack.cckeys / Key3Tuple.hh
mammoth_hack.cckeys / Key4Tuple.fwd.hh
mammoth_hack.cckeys / Key4Tuple.hh
mammoth_hack.cckeys / KeyLess.fwd.hh
mammoth_hack.cckeys / KeyLookup.fwd.hh
mammoth_hack.cckeys / KeyLookup.hh
mammoth_hack.ccsignals / Link.fwd.hh
mammoth_hack.ccsignals / Link.hh
mammoth_hack.ccsignals / LinkUnit.fwd.hh
mammoth_hack.ccsignals / LinkUnit.hh
mammoth_hack.ccoptions / mpi_stderr.hh
mammoth_hack.cckeys / NoClient.fwd.hh
mammoth_hack.cckeys / NoClient.hh
mammoth_hack.ccoptions / Option.fwd.hh
mammoth_hack.ccoptions / Option.hh
mammoth_hack.ccoptions / OptionCollection.fwd.hh
mammoth_hack.ccoptions / OptionCollection.hh
mammoth_hack.ccoptions / keys / OptionKey.fwd.hh
mammoth_hack.ccoptions / keys / OptionKey.hh
mammoth_hack.ccoptions / keys / OptionKeys.hh
mammoth_hack.ccpointer / owning_ptr.hh
mammoth_hack.ccfile / PathName.fwd.hh
mammoth_hack.ccfile / PathName.hh
mammoth_hack.ccoptions / PathOption.fwd.hh
mammoth_hack.ccoptions / PathOption.hh
mammoth_hack.ccoptions / keys / PathOptionKey.fwd.hh
mammoth_hack.ccoptions / keys / PathOptionKey.hh
mammoth_hack.ccoptions / PathVectorOption.fwd.hh
mammoth_hack.ccoptions / PathVectorOption.hh
mammoth_hack.ccoptions / keys / PathVectorOptionKey.fwd.hh
mammoth_hack.ccoptions / keys / PathVectorOptionKey.hh
mammoth_hack.ccoptions / RealOption.fwd.hh
mammoth_hack.ccoptions / RealOption.hh
mammoth_hack.ccoptions / keys / RealOptionKey.fwd.hh
mammoth_hack.ccoptions / keys / RealOptionKey.hh
mammoth_hack.ccoptions / RealVectorOption.fwd.hh
mammoth_hack.ccoptions / RealVectorOption.hh
mammoth_hack.ccoptions / keys / RealVectorOptionKey.fwd.hh
mammoth_hack.ccoptions / keys / RealVectorOptionKey.hh
mammoth_hack.ccoptions / ScalarOption.fwd.hh
mammoth_hack.ccoptions / ScalarOption.hh
mammoth_hack.ccoptions / ScalarOption_T_.fwd.hh
mammoth_hack.ccoptions / ScalarOption_T_.hh
mammoth_hack.ccoptions / keys / ScalarOptionKey.fwd.hh
mammoth_hack.ccoptions / keys / ScalarOptionKey.hh
mammoth_hack.ccsignals / SignalHub.fwd.hh
mammoth_hack.ccsignals / SignalHub.hh
mammoth_hack.cckeys / SmallKeyVector.fwd.hh
mammoth_hack.cckeys / SmallKeyVector.hh
mammoth_hack.ccstream_util.hh
mammoth_hack.ccoptions / StringOption.fwd.hh
mammoth_hack.ccoptions / StringOption.hh
mammoth_hack.ccoptions / keys / StringOptionKey.fwd.hh
mammoth_hack.ccoptions / keys / StringOptionKey.hh
mammoth_hack.ccoptions / StringVectorOption.fwd.hh
mammoth_hack.ccoptions / StringVectorOption.hh
mammoth_hack.ccoptions / keys / StringVectorOptionKey.fwd.hh
mammoth_hack.ccoptions / keys / StringVectorOptionKey.hh
mammoth_hack.cckeys / UserKey.fwd.hh
mammoth_hack.cckeys / VariantKey.fwd.hh
mammoth_hack.cckeys / VariantKey.hh
mammoth_hack.ccoptions / VariantOption.fwd.hh
mammoth_hack.ccoptions / VariantOption.hh
mammoth_hack.ccvector1.fwd.hh
mammoth_hack.ccvector1.hh
mammoth_hack.ccvector1_bool.hh
mammoth_hack.ccvectorL.fwd.hh
mammoth_hack.ccvectorL.hh
mammoth_hack.ccvectorL_bool.hh
mammoth_hack.ccvectorL_Selector.hh
mammoth_hack.ccoptions / VectorOption.fwd.hh
mammoth_hack.ccoptions / VectorOption.hh
mammoth_hack.ccoptions / VectorOption_T_.fwd.hh
mammoth_hack.ccoptions / VectorOption_T_.hh
mammoth_hack.ccoptions / keys / VectorOptionKey.fwd.hh
mammoth_hack.ccoptions / keys / VectorOptionKey.hh
mammoth_hack.ccVirtualBase.fwd.hh
mammoth_hack.ccVirtualBase.hh
medal_test.ccexcn / Exceptions.hh
medal_test.ccio / ozstream.hh
medal_test.ccvector1.hh
min_cst.ccexcn / Exceptions.hh
min_cst.ccio / ozstream.hh
min_cst.ccvector1.hh
model_quality.ccpointer / access_ptr.hh
model_quality.ccoptions / keys / all.hh
model_quality.ccoptions / AnyOption.fwd.hh
model_quality.ccoptions / AnyOption.hh
model_quality.ccoptions / keys / AnyOptionKey.fwd.hh
model_quality.ccoptions / keys / AnyOptionKey.hh
model_quality.ccoptions / AnyVectorOption.fwd.hh
model_quality.ccoptions / AnyVectorOption.hh
model_quality.ccoptions / keys / AnyVectorOptionKey.fwd.hh
model_quality.ccoptions / keys / AnyVectorOptionKey.hh
model_quality.cckeys / AutoKey.fwd.hh
model_quality.cckeys / AutoKey.hh
model_quality.ccoptions / BooleanOption.fwd.hh
model_quality.ccoptions / BooleanOption.hh
model_quality.ccoptions / keys / BooleanOptionKey.fwd.hh
model_quality.ccoptions / keys / BooleanOptionKey.hh
model_quality.ccoptions / BooleanVectorOption.fwd.hh
model_quality.ccoptions / BooleanVectorOption.hh
model_quality.ccoptions / keys / BooleanVectorOptionKey.fwd.hh
model_quality.ccoptions / keys / BooleanVectorOptionKey.hh
model_quality.ccBound.fwd.hh
model_quality.ccBound.hh
model_quality.ccsignals / BufferedSignalHub.fwd.hh
model_quality.ccsignals / BufferedSignalHub.hh
model_quality.ccdown_cast.hh
model_quality.ccexcn / Exceptions.hh
model_quality.ccexit.hh
model_quality.ccfile / FileName.fwd.hh
model_quality.ccfile / FileName.hh
model_quality.ccoptions / FileOption.fwd.hh
model_quality.ccoptions / FileOption.hh
model_quality.ccoptions / keys / FileOptionKey.fwd.hh
model_quality.ccoptions / keys / FileOptionKey.hh
model_quality.ccoptions / FileVectorOption.fwd.hh
model_quality.ccoptions / FileVectorOption.hh
model_quality.ccoptions / keys / FileVectorOptionKey.fwd.hh
model_quality.ccoptions / keys / FileVectorOptionKey.hh
model_quality.ccoptions / IntegerOption.fwd.hh
model_quality.ccoptions / IntegerOption.hh
model_quality.ccoptions / keys / IntegerOptionKey.fwd.hh
model_quality.ccoptions / keys / IntegerOptionKey.hh
model_quality.ccoptions / IntegerVectorOption.fwd.hh
model_quality.ccoptions / IntegerVectorOption.hh
model_quality.ccoptions / keys / IntegerVectorOptionKey.fwd.hh
model_quality.ccoptions / keys / IntegerVectorOptionKey.hh
model_quality.cckeys / Key.fwd.hh
model_quality.cckeys / Key.hh
model_quality.cckeys / Key2Tuple.fwd.hh
model_quality.cckeys / Key2Tuple.hh
model_quality.cckeys / Key3Tuple.fwd.hh
model_quality.cckeys / Key3Tuple.hh
model_quality.cckeys / Key4Tuple.fwd.hh
model_quality.cckeys / Key4Tuple.hh
model_quality.cckeys / KeyLess.fwd.hh
model_quality.cckeys / KeyLookup.fwd.hh
model_quality.cckeys / KeyLookup.hh
model_quality.ccsignals / Link.fwd.hh
model_quality.ccsignals / Link.hh
model_quality.ccsignals / LinkUnit.fwd.hh
model_quality.ccsignals / LinkUnit.hh
model_quality.ccoptions / mpi_stderr.hh
model_quality.cckeys / NoClient.fwd.hh
model_quality.cckeys / NoClient.hh
model_quality.ccoptions / Option.fwd.hh
model_quality.ccoptions / Option.hh
model_quality.ccoptions / OptionCollection.fwd.hh
model_quality.ccoptions / OptionCollection.hh
model_quality.ccoptions / keys / OptionKey.fwd.hh
model_quality.ccoptions / keys / OptionKey.hh
model_quality.ccoptions / keys / OptionKeys.hh
model_quality.ccpointer / owning_ptr.hh
model_quality.ccfile / PathName.fwd.hh
model_quality.ccfile / PathName.hh
model_quality.ccoptions / PathOption.fwd.hh
model_quality.ccoptions / PathOption.hh
model_quality.ccoptions / keys / PathOptionKey.fwd.hh
model_quality.ccoptions / keys / PathOptionKey.hh
model_quality.ccoptions / PathVectorOption.fwd.hh
model_quality.ccoptions / PathVectorOption.hh
model_quality.ccoptions / keys / PathVectorOptionKey.fwd.hh
model_quality.ccoptions / keys / PathVectorOptionKey.hh
model_quality.ccoptions / RealOption.fwd.hh
model_quality.ccoptions / RealOption.hh
model_quality.ccoptions / keys / RealOptionKey.fwd.hh
model_quality.ccoptions / keys / RealOptionKey.hh
model_quality.ccoptions / RealVectorOption.fwd.hh
model_quality.ccoptions / RealVectorOption.hh
model_quality.ccoptions / keys / RealVectorOptionKey.fwd.hh
model_quality.ccoptions / keys / RealVectorOptionKey.hh
model_quality.ccoptions / ScalarOption.fwd.hh
model_quality.ccoptions / ScalarOption.hh
model_quality.ccoptions / ScalarOption_T_.fwd.hh
model_quality.ccoptions / ScalarOption_T_.hh
model_quality.ccoptions / keys / ScalarOptionKey.fwd.hh
model_quality.ccoptions / keys / ScalarOptionKey.hh
model_quality.ccsignals / SignalHub.fwd.hh
model_quality.ccsignals / SignalHub.hh
model_quality.cckeys / SmallKeyVector.fwd.hh
model_quality.cckeys / SmallKeyVector.hh
model_quality.ccoptions / StringOption.fwd.hh
model_quality.ccoptions / StringOption.hh
model_quality.ccoptions / keys / StringOptionKey.fwd.hh
model_quality.ccoptions / keys / StringOptionKey.hh
model_quality.ccoptions / StringVectorOption.fwd.hh
model_quality.ccoptions / StringVectorOption.hh
model_quality.ccoptions / keys / StringVectorOptionKey.fwd.hh
model_quality.ccoptions / keys / StringVectorOptionKey.hh
model_quality.cckeys / UserKey.fwd.hh
model_quality.cckeys / VariantKey.fwd.hh
model_quality.cckeys / VariantKey.hh
model_quality.ccoptions / VariantOption.fwd.hh
model_quality.ccoptions / VariantOption.hh
model_quality.ccvector1.fwd.hh
model_quality.ccvector1.hh
model_quality.ccvector1_bool.hh
model_quality.ccvectorL.fwd.hh
model_quality.ccvectorL.hh
model_quality.ccvectorL_bool.hh
model_quality.ccvectorL_Selector.hh
model_quality.ccoptions / VectorOption.fwd.hh
model_quality.ccoptions / VectorOption.hh
model_quality.ccoptions / VectorOption_T_.fwd.hh
model_quality.ccoptions / VectorOption_T_.hh
model_quality.ccoptions / keys / VectorOptionKey.fwd.hh
model_quality.ccoptions / keys / VectorOptionKey.hh
model_quality.ccVirtualBase.fwd.hh
model_quality.ccVirtualBase.hh
per_residue_features.ccexcn / Exceptions.hh
per_residue_features.ccstring_util.hh
per_residue_features.ccvector1.hh
phi_hack.ccexcn / Exceptions.hh
phi_hack.ccio / ozstream.hh
pick_frags.ccexcn / Exceptions.hh
pick_frags.ccfile / file_sys_util.hh
pick_frags.ccfile / FileName.hh
pick_frags.ccio / izstream.hh
pick_frags.ccio / ozstream.hh
pick_frags.ccvector1.hh
prof_search.ccexcn / Exceptions.hh
prof_search.ccfile / FileName.hh
prof_search.ccio / izstream.hh
prof_search.ccio / ozstream.hh
prof_search.ccvector1.hh
remap_aln.ccexcn / Exceptions.hh
remap_aln.ccfile / FileName.hh
remap_aln.ccio / ozstream.hh
remap_aln.ccvector1.hh
sc_interaction.ccexcn / Exceptions.hh
sc_interaction.ccio / ozstream.hh
sc_interaction.ccvector1.hh
score_silent_cst.ccexcn / Exceptions.hh
score_silent_cst.ccio / ozstream.hh
score_silent_cst.ccvector1.hh
seqdb_stats.ccexcn / Exceptions.hh
seqdb_stats.ccfile / file_sys_util.hh
seqdb_stats.ccfile / FileName.hh
seqdb_stats.ccio / izstream.hh
seqdb_stats.ccio / ozstream.hh
seqdb_stats.ccvector1.hh
silent_cst_quality.ccexcn / Exceptions.hh
silent_cst_quality.ccvector1.hh
simple_cm.ccexcn / Exceptions.hh
simple_cm.ccfile / file_sys_util.hh
simple_cm.ccfile / FileName.hh
simple_cm.ccio / izstream.hh
simple_cm.ccio / ozstream.hh
simple_cm.ccvector1.hh
sparta_superdev.ccexcn / Exceptions.hh
sparta_superdev.ccio / ozstream.hh
sparta_superdev.ccvector1.hh
super.ccexcn / Exceptions.hh
super.ccvector1.hh
superdev.ccexcn / Exceptions.hh
superdev.ccio / ozstream.hh
superdev.ccvector1.hh
thread_fast.ccexcn / Exceptions.hh
thread_fast.ccexit.hh
thread_fast.ccfile / file_sys_util.hh
thread_fast.ccfile / FileName.hh
thread_fast.ccio / mpistream.hh
thread_fast.ccstring_util.hh
thread_fast.ccvector1.hh
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