Here is a list of all class members with links to the classes they belong to:

- d -

• d : DCST , Floating_point , S::_D
• D : S
• d : W128_T
• d2s() : utility::subset_mapping
• d_ : ObjexxFCL::format::Bite< T >
• d_bundle_ids : gpu_node_block_ptrs
• d_calculate_pair_table : calculation_data_for_one_block_pair
• d_clash_table : calculation_data_for_one_block_pair
• d_good_node_pairs : calculation_data_for_one_block_pair
• d_n_good_node_pairs : calculation_data_for_one_block_pair
• d_rmsd_table : calculation_data_for_one_block_pair
• dang : Hit
• dashboard_address : pyrosetta.distributed.cluster.core.PyRosettaCluster
• dashed : pyrosetta.distributed.viewer.modules.setHydrogenBonds
• data : Base , basic::datacache::DataCache< Data > , basic::datacache::DiagnosticData , basic_string_view< Char > , Cache::head_t , Derived , detail::buffer< T > , detail::fill_t< Char > , detail::format_part_array< Char, N > , detail::named_arg_value< Char > , detail::string_value< Char > , dynamic_format_arg_store< Context > , format_int , numeric::kdtree::KDNode , numeric::kdtree::KDPoint , numeric::MathNTensor< T, N > , numeric::VoxelArray< _Float, _Value > , ObjexxFCL::Fstring , schema.NumpyCache , TemplateSpecialization< T > , ui::network::BowmanModel , ui::task::File , ui::task::FileTableModel , ui::task::ProjectModel , ui::task::ProjectTasksModel , utility::graph::UEEdge< V, E > , utility::graph::UEVertex< V, E > , utility::list_element< T > , utility::OrderedTuple< T > , utility::thread::SharedThreadLocalData< T > , utility::VBWrapper< T >
• Data1() : Data1
• data_ : basic::database::insert_statement_generator::RowData< T > , basic::datacache::DataCache< Data > , basic::datacache::DiagnosticData , basic::MetricValue< T > , basic::Report , basic_cstring_view< Char > , basic_string_view< Char > , bytes , detail::counting_buffer< T > , detail::fill_t< Char > , detail::iterator_buffer< OutputIt, T, Traits > , dynamic_format_arg_store< Context > , format_arg_store< Context, Args > , numeric::geometry::hashing::SixDOffsetTree , numeric::kdtree::KDPoint , numeric::MathMatrix< T > , numeric::MathNTensor< T, N > , numeric::MathTensor< T > , numeric::MathVector< T > , numeric::VoxelArray< _Float, _Value > , pseudoTraceRecords , utility::DenseBoolMap< NUM_ELEMS, BASE_INDEX > , utility::graph::UEEdge< V, E > , utility::graph::UEVertex< V, E > , utility::list_element< T > , utility::OrderedTuple< T > , utility::thread::MutableCache< K, V >
• data_creator_map_ : basic::datacache::WriteableCacheableDataFactory
• data_download_finished() : ui::task::Node
• data_far_ : myspace::DataClass
• data_is_fresh() : ui::task::Node
• data_is_outdated() : ui::task::Node
• data_map_ : basic::datacache::ConstDataMap , basic::datacache::DataMap , basic::datacache::HierarchicalDataMap
• data_n : GunnTest
• data_p : GunnTest
• data_reference_type : numeric::VoxelArray< _Float, _Value >
• data_self_ : myspace::DataClass
• data_upload_finished() : ui::task::Node
• DataAP : basic::datacache::DataCache< Data >
• database_session_resource_tag_ : basic::resource_manager::locator::DatabaseResourceLocator
• database_window : job_manager.CommandWindow
• DatabaseResourceLocator() : basic::resource_manager::locator::DatabaseResourceLocator
• DatabaseResourceLocatorCreator() : basic::resource_manager::locator::DatabaseResourceLocatorCreator
• DatabaseSessionManager() : utility::sql_database::DatabaseSessionManager
• DataCache() : basic::datacache::DataCache< Data >
• DataCAP : basic::datacache::DataCache< Data >
• DataClass() : myspace::DataClass
• DataCOP : basic::datacache::DataCache< Data >
• DataMap() : basic::datacache::DataMap , basic::datacache::WriteableCacheableMap
• DataOP : basic::datacache::DataCache< Data >
• DataOPs : basic::datacache::DataCache< Data >
• datatype() : basic::datacache::WriteableCacheableData
• date() : utility::Version
• db : pyrosetta.protocols.structure_search.StructureSearchManager
• db_mode_ : utility::sql_database::session
• db_name_ : InterfaceFeaturesTests , utility::sql_database::session
• db_partition_ : utility::sql_database::session
• db_session_ : basic::resource_manager::locator::DatabaseResourceLocator , InterfaceFeaturesTests
• db_to_use_threshold_ : ClosabilityScore
• DbBigInt() : basic::database::schema_generator::DbBigInt
• DbDataType() : basic::database::schema_generator::DbDataType
• DbDouble() : basic::database::schema_generator::DbDouble
• DbInteger() : basic::database::schema_generator::DbInteger
• DbMoverMessageListener() : basic::mpi::DbMoverMessageListener
• DbReal() : basic::database::schema_generator::DbReal
• DbText() : basic::database::schema_generator::DbText
• DbTextKey() : basic::database::schema_generator::DbTextKey
• DbUUID() : basic::database::schema_generator::DbUUID
• dcst : ConstraintConfig
• DCST() : DCST
• dctPlan : numeric::fourier::SHT
• ddg : HIT
• DDG_CUT_ : CrystDesign
• ddis : Hit
• ddy() : numeric::interpolation::spline::SimpleInterpolator
• ddy_ : numeric::interpolation::spline::SimpleInterpolator
• deactivate() : utility::Bound< T > , utility::options::Option , utility::options::ScalarOption , utility::options::ScalarOption_T_< K, T > , utility::options::VariantOption< O > , utility::options::VectorOption , utility::options::VectorOption_T_< K, T >
• deallocate() : basic_memory_buffer< T, SIZE, Allocator > , utility::signals::SignalHub< ReturnType, Signal >
• deallocate_array() : utility::graph::ArrayPool< T >
• deallocate_resource() : basic::resource_manager::ResourceManager
• Debug : basic::Tracer , basic::TracerImpl
• debug : erraser_option.erraser_option , PoseWrap
• debug_ : CrystFFTDock , MyRotMover , MyTransMover
• debug_exact_ : CrystFFTDock
• debug_pdb() : numeric::geometry::hashing::xyzStripeHash
• decimal_digits : detail::dragonbox::float_info< double > , detail::dragonbox::float_info< float >
• DeclarationMap : basic::resource_manager::ResourceManager
• decoder : pyrosetta.distributed.cluster.serialization.Serialization
• decompress_kwargs() : pyrosetta.distributed.cluster.serialization.Serialization
• decompress_object() : pyrosetta.distributed.cluster.serialization.Serialization
• decompress_packed_pose() : pyrosetta.distributed.cluster.serialization.Serialization
• decoy_dir_name : pyrosetta.distributed.cluster.core.PyRosettaCluster , pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest
• decoy_ids : pyrosetta.distributed.cluster.core.PyRosettaCluster
• decoy_path : pyrosetta.distributed.cluster.core.PyRosettaCluster
• decoy_satisfactions_ : ConstraintStatsMover
• decoy_violations_ : ConstraintStatsMover
• decoyify() : HBondReporter
• Decoys : ui::viewers::ScoreFileView
• decoys_ : ui::viewers::ScoreFileView
• decoys_path_ : ui::viewers::ScoreFileView
• decrease_coval() : utility::heap
• decrement_copy_from_helix() : ui::ui_protocols::helical_bundle::HelixOptionWidget
• decrement_indentation() : numeric::expression_parser::ASTPrinter
• deep_copy_vector1() : utility::deep_copy_vector1< T >
• deepcopy_kwargs() : pyrosetta.distributed.cluster.serialization.Serialization
• DeepCopyOP() : utility::pointer::DeepCopyOP< T >
• def() : utility::options::FileOption , utility::options::FileVectorOption , utility::options::PathOption , utility::options::PathVectorOption , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default : job_manager.CommandLauncher , job_manager.CorrelationTime , job_manager.TorsionVsTime , options_class.Option
• DEFAULT : utility::options::Option
• default_ : ui::network::BooleanArgument , ui::network::FloatArgument , ui::network::IntegerArgument , ui::network::StringArgument
• default_active() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_call_guard() : binder::Config
• default_call_guard_ : binder::Config
• default_client : pyrosetta.tests.distributed.cluster.test_smoke.TestBase
• default_inactive() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_inactive_error() : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_inactive_write_locked() : utility::options::ScalarOption_T_< K, T >
• default_is_legal() : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_is_legal_write_locked() : utility::options::ScalarOption_T_< K, T >
• default_member_lvalue_reference_return_value_policy() : binder::Config
• default_member_lvalue_reference_return_value_policy_ : binder::Config
• default_member_pointer_return_value_policy() : binder::Config
• default_member_pointer_return_value_policy_ : binder::Config
• default_member_rvalue_reference_return_value_policy() : binder::Config
• default_member_rvalue_reference_return_value_policy_ : binder::Config
• default_obeys_bounds() : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_obeys_bounds_write_locked() : utility::options::ScalarOption_T_< K, T >
• default_options() : protocols::surface_docking::AntibodyInfoRMLoader , pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask
• default_size() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VariantOption< O > , utility::options::VectorOption_T_< K, T >
• default_size_ok() : utility::options::VectorOption_T_< K, T >
• default_state_ : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_static_lvalue_reference_return_value_policy() : binder::Config
• default_static_lvalue_reference_return_value_policy_ : binder::Config
• default_static_pointer_return_value_policy() : binder::Config
• default_static_pointer_return_value_policy_ : binder::Config
• default_static_rvalue_reference_return_value_policy() : binder::Config
• default_static_rvalue_reference_return_value_policy_ : binder::Config
• default_string() : utility::options::BooleanOption , utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_string_write_locked() : utility::options::ScalarOption_T_< K, T >
• default_to() : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_value() : utility::options::FileOption , utility::options::FileVectorOption , utility::options::PathOption , utility::options::PathVectorOption , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T > , utility::tag::XMLSchemaAttribute
• default_value_ : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T > , utility::tag::XMLSchemaAttribute
• defer_ : basic::database::schema_generator::ForeignKey
• defines_intrares_energy() : CapriTwoBodyEnergy , test.T870_SubClassing_EnergyMethods2.CD2B_Method , test.T870_SubClassing_EnergyMethods2.CI2B_Method , test.Workshop9_my_shapes.CI2BScoreMethod
• definition() : utility::json_spirit::Json_grammer< Value_type, Iter_type >::definition< ScannerT >
• deg2rad() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• degree : Kernel , numeric::Polynomial_1d , svm_parameter
• degree_ : numeric::Polynomial_1d
• degrees_to_radians() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• delay : pyrosetta.distributed.viewer.core.Viewer
• delay_level1_ : AppSettings
• delay_level2_ : AppSettings
• delay_level3_ : AppSettings
• Delete() : Delete , PyCallBack_Delete
• delete_contents_at_nread_limit() : utility::io::FileContentsMap
• delete_contents_at_nread_limit_ : utility::io::FileContentsMap
• delete_edge() : utility::graph::Digraph , utility::graph::Graph , utility::graph::LowMemGraph< _LMNode, _LMEdge > , utility::graph::UEEdge< V, E >
• delete_everything() : utility::graph::Digraph , utility::graph::Graph , utility::graph::LowMemGraph< _LMNode, _LMEdge >
• delete_extra_residues() : A3BHbsCreatorMover
• delete_file() : ui::task::Task
• delete_file_contents() : utility::io::FileContentsMap
• delete_job() : ui::task::Task
• delete_node() : utility::graph::Graph
• deleted() : utility::graph::UEEdge< V, E >
• deleted_ : utility::graph::UEEdge< V, E >
• deleted_edges_offsets_ : utility::graph::LowMemGraph< _LMNode, _LMEdge >
• DeleteSegments() : DeleteSegments
• delimiter : formatting_range< Char, Enable > , formatting_tuple< Char, Enable >
• delta : basic::sampling::orientations::QuatDBMetadata , basic::sampling::orientations::QuaternionGrid
• delta_ : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::CubicSpline , numeric::interpolation::spline::PolycubicSpline< N > , numeric::interpolation::spline::PolycubicSpline< 1 > , numeric::interpolation::spline::PolycubicSpline< 2 > , numeric::interpolation::spline::TricubicSpline
• dens_cut : ElecDensMinPackMinReporter
• dens_score_ : CAtrace
• DENS_WT : pseudoTrace
• dens_wt_ : FragmentAssemblyMover
• DenseBoolMap() : utility::DenseBoolMap< NUM_ELEMS, BASE_INDEX >
• densities() : numeric::interpolation::Histogram< X, Y >
• densities_ : numeric::interpolation::Histogram< X, Y >
• density_wt_ : MinPackMin
• dependencies() : binder::Binder , binder::ClassBinder
• dependencies_ : binder::ClassBinder
• depth() : basic::Emitter
• dereference() : HBondedPairIterator
• DereferenceIterator() : utility::DereferenceIterator< Container >
• derivative() : numeric::interpolation::Histogram< X, Y >
• Derivative() : numeric::interpolation::spline::CubicSpline
• derivative_linear() : numeric::interpolation::Histogram< X, Y >
• DerivedNameFunction : utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl , utility::tag::XMLSchemaRepeatableCTNode , utility::tag::XMLSchemaSimpleSubelementList
• des : HubDenovo
• desc : format_arg_store< Context, Args > , options_class.Option
• desc_ : basic_format_args< Context > , utility::tag::XMLSchemaComplexType
• description : schema.Job , SomeThingGetter , ui::network::Argument , ui::task::Task , utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VariantOption< O > , utility::options::VectorOption_T_< K, T > , utility::tag::XMLSchemaAttribute , utility::tag::XMLSchemaComplexType , utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl , utility::tag::XMLSchemaSimpleSubelementList::ElementSummary , VecContains , VecLen , VecMaxElement , VecMean , VecMinElement
• description_ : NativeEnsemble , ui::network::Argument , ui::task::Task , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T > , utility::tag::XMLSchemaAttribute , utility::tag::XMLSchemaComplexTypeGeneratorImpl
• deserialize() : numeric::interpolation::spline::CompoundInterpolator , numeric::interpolation::spline::Interpolator , numeric::interpolation::spline::SimpleInterpolator
• deserialize_data() : basic::mpi::DbMoverMessageListener
• design() : HubDenovo
• design_cycle() : CrystDesign
• design_mover_ : HemeBindingMover
• design_pose : DesignBenchmark
• design_res_user : PoseWrap
• design_score_function_ : HemeBindingMover
• design_symmetric_homodimer_interface() : zinc1_homodimer_design
• design_symmetric_homodimer_metal_interface() : zinc2_homodimer_design
• design_this_nodes_pose() : protocols::jd2::RECONMPIJobDistributor
• DesignBenchmark() : DesignBenchmark
• Designer() : Designer
• designer_ : DesignGlycansProtocol
• DesignGlycansProtocol() : DesignGlycansProtocol
• DesignOpts() : DesignOpts
• destination_size() : utility::subset_mapping
• destroy() : boost::unordered_object_pool< T, UserAllocator >
• destroy_char_buffer() : utility::io::ozstream
• destructed() : ObjexxFCL::Dimension , ObjexxFCL::DimensionExpression , ObjexxFCL::DimensionExpressionCon , ObjexxFCL::DimensionExpressionCube , ObjexxFCL::DimensionExpressionDiv , ObjexxFCL::DimensionExpressionMax , ObjexxFCL::DimensionExpressionMin , ObjexxFCL::DimensionExpressionMul , ObjexxFCL::DimensionExpressionPow , ObjexxFCL::DimensionExpressionRef , ObjexxFCL::DimensionExpressionSquare , ObjexxFCL::DimensionExpressionSub , ObjexxFCL::DimensionExpressionSum , ObjexxFCL::DynamicIndexRange , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T > , ObjexxFCL::Observer
• det() : numeric::xyzMatrix< T >
• detach() : ObjexxFCL::CArrayP< T > , ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::FArray< T >
• detail::arg_data : basic_format_arg< Context >
• detail::make_arg : basic_format_arg< Context >
• detectDisulfideBond() : DisulfideBondEnergy
• DetectSymmetry() : DetectSymmetry
• determine_central_seqpos() : InterfaceDDGMover
• determine_docking_partners() : DockGlycansProtocol
• determine_if_complex() : InterfaceDDGMover
• determine_if_wt() : InterfaceDDGMover
• determine_mutation() : InterfaceDDGMover
• determine_xyz_unit_vectors() : ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget
• deviations_ : SpartaSuperDeviationMover , SuperDeviationMover
• device_id_ : CL
• devmajor : utility::io::TarFileHeader
• devminor : utility::io::TarFileHeader
• dF() : numeric::interpolation::spline::CubicSpline
• dFdall() : numeric::interpolation::spline::PolycubicSpline< N > , numeric::interpolation::spline::PolycubicSpline< 1 > , numeric::interpolation::spline::PolycubicSpline< 2 >
• dFdx() : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::TricubicSpline
• dFdxi() : numeric::interpolation::spline::PolycubicSpline< N > , numeric::interpolation::spline::PolycubicSpline< 1 > , numeric::interpolation::spline::PolycubicSpline< 2 >
• dFdy() : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::TricubicSpline
• dFdz() : numeric::interpolation::spline::TricubicSpline
• dfunc() : AbsFunc , CheeseFunction , CoupledFunc , PseudoCAMultifunc , RepFunc , RTminOptMultifunc
• diag() : numeric::xyzMatrix< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::KeyFArray2D< T >
• DiagnosticData() : basic::datacache::DiagnosticData
• die_for_unaccessed_options() : utility::tag::Tag
• die_for_unaccessed_options_recursively() : utility::tag::Tag
• DietNode() : numeric::DietNode< T >
• DietNodeOP : numeric::DietNode< T > , numeric::DiscreteIntervalEncodingTree< T >
• Difference : ObjexxFCL::CArray< T > , ObjexxFCL::CArrayP< T > , ObjexxFCL::ChunkVector< T > , ObjexxFCL::FArray1< T > , ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::FArray< T > , ObjexxFCL::FArraySection< T > , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T > , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyMapTraits< K, T > , utility::keys::KeySetTraits< K > , utility::keys::KeyVector< K, T > , utility::keys::KeyVectorTraits< K > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< L, T, A > , utility::vectorL< L, bool, A >
• difference_type : boost::unordered_object_pool< T, UserAllocator > , detail::counting_iterator , detail::truncating_iterator_base< OutputIt > , numeric::geometry::hashing::xyzStripeHash::iter_base< C > , numeric::sphericalVector< T > , numeric::xyzTriple< T > , numeric::xyzVector< T > , ObjexxFCL::CArray< T > , ObjexxFCL::CArrayP< T > , ObjexxFCL::ChunkVector< T > , ObjexxFCL::FArray1< T > , ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::FArray< T > , ObjexxFCL::FArraySection< T > , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T > , utility::DereferenceIterator< Container > , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyMapTraits< K, T > , utility::keys::KeySetTraits< K > , utility::keys::KeyVector< K, T > , utility::keys::KeyVectorTraits< K > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< L, T, A > , utility::vectorL< L, bool, A >
• differentiate() : numeric::expression_parser::AbsoluteValueExpression , numeric::expression_parser::AddExpression , numeric::expression_parser::AndExpression , numeric::expression_parser::DivideExpression , numeric::expression_parser::EqualsExpression , numeric::expression_parser::Expression , numeric::expression_parser::GT_Expression , numeric::expression_parser::GTE_Expression , numeric::expression_parser::ITEExpression , numeric::expression_parser::LiteralExpression , numeric::expression_parser::LT_Expression , numeric::expression_parser::LTE_Expression , numeric::expression_parser::MaxExpression , numeric::expression_parser::MetaMaxExpression , numeric::expression_parser::MetaMinExpression , numeric::expression_parser::MinExpression , numeric::expression_parser::MultiplyExpression , numeric::expression_parser::NotExpression , numeric::expression_parser::OrExpression , numeric::expression_parser::SquarerootExpression , numeric::expression_parser::SubtractExpression , numeric::expression_parser::VariableExpression
• digit_pair : detail::basic_data< T >
• digits : detail::basic_data< T >
• Digraph() : utility::graph::Digraph
• dihed_scorefxn_ : zinc1_homodimer_design
• dihedral() : Arch , ArchP4g_42d , ArchP4m_42d , ArchP6m_32d
• dihedral1() : Arch
• dihedral2() : Arch , ArchP4g_42d , ArchP4m_42d , ArchP6m_32d
• dihedral_func_ : HemeBindingMover
• dihedral_func_2_ : HemeBindingMover
• dihedral_stdev_ : ZincMatchFilter
• dihedral_weight_ : ZincMatchFilter
• DIM : numeric::VoxelArray< _Float, _Value >
• dim() : ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6P< T >
• dim_labels() : numeric::MultiDimensionalHistogram
• dim_labels_ : numeric::MultiDimensionalHistogram
• dim_p_ : ObjexxFCL::DimensionExpressionRef
• dim_sizes_ : utility::FixedSizeLexicographicalIterator< S > , utility::LexicographicalIterator
• dimension() : numeric::interpolation::InterpolatedPotential< N >
• Dimension() : ObjexxFCL::Dimension
• dimension() : ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T >
• dimension_argument() : ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray6A< T >
• dimension_assign() : ObjexxFCL::FArray1< T > , ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T >
• dimension_proxy() : ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6P< T >
• dimension_real() : ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T >
• dimensionality() : numeric::interpolation::spline::PolycubicSpline< N > , numeric::interpolation::spline::PolycubicSpline< 1 > , numeric::interpolation::spline::PolycubicSpline< 2 > , numeric::interpolation::spline::PolycubicSplineBase , numeric::MathNTensorBase< T >
• dimensionality_ : numeric::interpolation::spline::PolycubicSplineBase , numeric::MathNTensorBase< T >
• DimensionExpression() : ObjexxFCL::DimensionExpression
• DimensionExpressionCon() : ObjexxFCL::DimensionExpressionCon
• DimensionExpressionCube() : ObjexxFCL::DimensionExpressionCube
• DimensionExpressionDiv() : ObjexxFCL::DimensionExpressionDiv
• DimensionExpressionMax() : ObjexxFCL::DimensionExpressionMax
• DimensionExpressionMin() : ObjexxFCL::DimensionExpressionMin
• DimensionExpressionMul() : ObjexxFCL::DimensionExpressionMul
• DimensionExpressionPow() : ObjexxFCL::DimensionExpressionPow
• DimensionExpressionRef() : ObjexxFCL::DimensionExpressionRef
• DimensionExpressionSquare() : ObjexxFCL::DimensionExpressionSquare
• DimensionExpressionSub() : ObjexxFCL::DimensionExpressionSub
• DimensionExpressionSum() : ObjexxFCL::DimensionExpressionSum
• dimensions_initialized() : ObjexxFCL::FArray1< T > , ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::FArray< T > , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T >
• dimOther() : numeric::fourier::kiss_fftndr_state
• dimOther_ : numeric::fourier::kiss_fftndr_state
• dimprod() : numeric::fourier::kiss_fftnd_state
• dimprod_ : numeric::fourier::kiss_fftnd_state
• dimprods_ : numeric::geometry::hashing::SixDCoordinateBinner
• dimReal() : numeric::fourier::kiss_fftndr_state
• dimReal_ : numeric::fourier::kiss_fftndr_state
• dims() : numeric::fourier::kiss_fftnd_state
• dims_ : numeric::fourier::kiss_fftnd_state
• dims_v() : numeric::fourier::kiss_fftnd_state
• dimsize() : utility::FixedSizeLexicographicalIterator< S > , utility::LexicographicalIterator
• dimsizes() : numeric::geometry::hashing::SixDCoordinateBinner
• dimsizes_ : numeric::geometry::hashing::SixDCoordinateBinner
• DirectedEdge : utility::graph::Digraph , utility::graph::DirectedEdge
• DirectedEdgeList() : utility::graph::DirectedEdgeList , utility::graph::DirectedEdgeListConstIterator , utility::graph::DirectedEdgeListElement , utility::graph::DirectedEdgeListIterator
• DirectedEdgeListConstIter : utility::graph::Digraph , utility::graph::DirectedNode
• DirectedEdgeListConstIterator() : utility::graph::DirectedEdgeListConstIterator , utility::graph::DirectedEdgeListIterator
• DirectedEdgeListElement() : utility::graph::DirectedEdgeListElement
• DirectedEdgeListIter : utility::graph::Digraph , utility::graph::DirectedEdge , utility::graph::DirectedNode
• DirectedEdgeListIterator() : utility::graph::DirectedEdgeListIterator
• DirectedNode : utility::graph::Digraph , utility::graph::DirectedNode
• DirectedNodeVector : utility::graph::Digraph
• disallow_res_ : HDdesignMover
• discard() : pyrosetta.bindings.pose.ResidueLabelAccessor
• disconnect() : utility::signals::SignalHub< ReturnType, Signal > , utility::signals::TokenHub< ReturnType, Signal >
• disconnect_tokenize() : utility::signals::TokenHub< ReturnType, Signal >
• discover_vertex() : PathFinder , RerootRestypeVisitor , utility::graph::HideVertexVisitor< Graph > , utility::graph::null_bfs_prune_visitor
• disjoint_set_sizes() : utility::graph::DisjointSets
• DisjointSets() : utility::graph::DisjointSets
• dismiss() : job_manager.CommandRunner
• dismiss_button : job_manager.StatusWindow
• display() : utility::excn::Exception , utility::excn::UserCorrectableIssue
• dist() : CoupledFunc , DisulfideBondEnergy
• dist_ : InteractionDistMinimizer , SSM_energies
• dist_func_ : HemeBindingMover
• dist_mins_ : ConstraintStatsMover
• dist_to_detector_ : SimulateCryoMover
• DIST_WT : pseudoTrace
• distance() : DistanceMatrix , numeric::ClusteringTreeNode , numeric::kdtree::KDNode , numeric::kdtree::KDPoint , numeric::xyzTransform< T > , numeric::xyzTriple< T > , numeric::xyzVector< T > , ObjexxFCL::CArray< T > , ObjexxFCL::CArrayP< T > , ObjexxFCL::ChunkVector< T > , ObjexxFCL::FArray1< T >
• distance_ : numeric::ClusteringTreeNode , numeric::kdtree::KDPoint
• distance_cutoff() : numeric::kdtree::KDPointList
• distance_cutoff_ : MetalSiteFinderMover , numeric::kdtree::KDPointList
• distance_squared() : MyRT , numeric::xyzTransform< T > , numeric::xyzTriple< T > , numeric::xyzVector< T > , ObjexxFCL::CArray< T > , ObjexxFCL::CArrayP< T > , ObjexxFCL::ChunkVector< T > , ObjexxFCL::FArray1< T >
• distance_stdev_ : ZincMatchFilter
• distance_threshold_ : SwapElementsMover1 , SwapElementsMover2
• distance_weight_ : ZincMatchFilter
• DistanceMatrix() : DistanceMatrix
• DistancePrediction() : DistancePrediction
• distances_ : DistanceMatrix , utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >
• disth : KRSQuery
• distmax_matrix : protocols::moves::SimpleCstMover
• distmin_matrix : protocols::moves::SimpleCstMover
• distribute() : pyrosetta.distributed.cluster.core.PyRosettaCluster
• distribution() : NonceHistogram , numeric::random::DistributionSampler< T >
• distribution_ : NonceHistogram , numeric::random::DistributionSampler< T >
• DistributionSampler() : numeric::random::DistributionSampler< T >
• disulf() : DisulfEposDatabase
• DisulfEpos() : DisulfEpos
• DisulfEposDatabase() : DisulfEposDatabase
• disulfide_mm_ : UBQ_GTPase_disulfide_Mover
• disulfide_treatment() : GlycomutagenesisProtocol
• DisulfideBondEnergy() : DisulfideBondEnergy
• disulfs : DisulfEposDatabase
• divide : numeric::sphericalVector< T > , numeric::xyzTriple< T > , numeric::xyzVector< T >
• DivideExpression() : numeric::expression_parser::DivideExpression
• divisibility_check_by_5_threshold : detail::dragonbox::float_info< double > , detail::dragonbox::float_info< float >
• divmod_assign() : detail::bigint
• divtest_table_for_pow5_32 : detail::basic_data< T >
• divtest_table_for_pow5_64 : detail::basic_data< T >
• do_convolution() : CrystFFTDock
• do_distributed_rerun() : protocols::abinitio::JumpSpecificAbrelax
• do_has_observer() : ObjexxFCL::ObserverMulti
• do_indent() : basic::Emitter , basic::JsonEmitter , basic::YamlEmitter
• do_mc() : A3BHbsCreatorMover
• do_multistage_work_vector_in_threads() : basic::thread_manager::RosettaThreadManager
• do_mutate() : PerturbStruct
• do_notify_destructed() : ObjexxFCL::ObserverMulti
• do_parse() : formatter< std::chrono::duration< Rep, Period >, Char >
• do_remove_observer() : ObjexxFCL::ObserverMulti
• do_repack_ : CenRotDockingMover
• do_rerun() : protocols::abinitio::JumpSpecificAbrelax
• do_reversion() : CrystDesign
• do_rigid_body_moves() : ChallengeMover
• do_shrinking() : Solver , Solver_NU
• do_work_vector_in_threads() : basic::thread_manager::RosettaThreadManager
• do_work_vector_in_threads_no_locking() : basic::thread_manager::RosettaThreadManager
• doc : pyrosetta.distributed.docs.ComponentDoc
• Dock() : Dock
• dock_get_geom() : TCDock
• dock_no_score() : TCDock
• dock_score() : TCDock
• dock_strands() : InterfaceStrandFinderMover
• DockGlycansProtocol() : DockGlycansProtocol
• docking : DockingBenchmark< dock, TScale >
• docking_scorefxn_high_ : protocols::antibody::design::AntibodyDesignMoverGenerator
• docking_scorefxn_low_ : protocols::antibody::design::AntibodyDesignMoverGenerator
• DockingBenchmark() : DockingBenchmark< dock, TScale >
• dofs_ : MyRotMover , MySlideMover , MyTransMover
• doi() : basic::citation_manager::Citation
• doi_ : basic::citation_manager::Citation
• doi_rosetta_citation_map_ : basic::citation_manager::CitationManager
• Domain() : Domain
• DomainAssemblerNDocker() : DomainAssemblerNDocker
• DomainDescription() : DomainDescription
• DomainFinder() : DomainFinder
• domains_ : DomainFinder
• don_geom_check() : BuriedUnsatPolarsFinder
• donor_atoms_ : HBondedPairIterator
• donor_bases_ : HBondedPairIterator
• dont_exit_on_error() : CL
• dot() : Kernel , numeric::Quaternion< T > , numeric::xyzTriple< T > , numeric::xyzVector< T > , ObjexxFCL::CArray< T > , ObjexxFCL::CArrayP< T > , ObjexxFCL::ChunkVector< T > , ObjexxFCL::FArray1< T >
• dot_product : numeric::Quaternion< T > , numeric::xyzTriple< T > , numeric::xyzVector< T > , ObjexxFCL::CArray< T > , ObjexxFCL::CArrayP< T > , ObjexxFCL::ChunkVector< T > , ObjexxFCL::FArray1< T >
• double_bigit : detail::bigint
• double_clicked() : ui::network::BowmanView
• double_msg() : utility::SimulateMPIMessage
• double_msg_ : utility::SimulateMPIMessage
• double_of() : ObjexxFCL::Fstring
• double_significand_size : detail::fp
• double_value : detail::value< Context >
• doubles_msg() : utility::SimulateMPIMessage
• doubles_msg_ : utility::SimulateMPIMessage
• DougsDockDesignMinimizeMagicMover() : DougsDockDesignMinimizeMagicMover
• downsample_xyz() : SimulateCryoMover
• downstream_chains_ : DockGlycansProtocol
• downstream_residues_from_jump() : ChallengeMover
• dphi : BBG_Cyclic_Mover
• draft_to_queued() : ui::task::TaskSyncer_NodeStrategy
• drag_mode_ : ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• DragMode : ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• dragonbox_pow10_recovery_errors : detail::basic_data< T >
• dragonbox_pow10_significands_128 : detail::basic_data< T >
• dragonbox_pow10_significands_64 : detail::basic_data< T >
• draw() : test.Workshop9_my_shapes.MyShape
• dres1 : CST
• dres2 : CST
• drop_all_edges() : utility::graph::Digraph , utility::graph::DirectedNode , utility::graph::Graph , utility::graph::LowMemGraph< _LMNode, _LMEdge > , utility::graph::LowMemNode , utility::graph::Node , utility::graph::UEVertex< V, E > , utility::graph::UpperEdgeGraph< V, E >
• drop_all_edges_for_node() : utility::graph::Digraph , utility::graph::Graph , utility::graph::LowMemGraph< _LMNode, _LMEdge > , utility::graph::LowMemGraphBase
• drop_edge() : utility::graph::Digraph , utility::graph::DirectedNode , utility::graph::Graph , utility::graph::Node
• dry_pose_ : xtal_water_bunsat
• dry_run : pyrosetta.distributed.cluster.core.PyRosettaCluster
• dry_run_ : basic::ComparingTracer
• ds_find() : utility::graph::DisjointSets
• ds_make_set() : utility::graph::DisjointSets
• ds_union() : utility::graph::DisjointSets
• dsecox_ : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::CubicSpline , numeric::interpolation::spline::TricubicSpline
• dsecoxy_ : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::TricubicSpline
• dsecoxyz_ : numeric::interpolation::spline::TricubicSpline
• dsecoxz_ : numeric::interpolation::spline::TricubicSpline
• dsecoy_ : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::TricubicSpline
• dsecoyz_ : numeric::interpolation::spline::TricubicSpline
• dsecoz_ : numeric::interpolation::spline::TricubicSpline
• dsRNA_grow() : dsRNA_grow
• Dssp : CountContact
• dssp_ : apps::pilot::frankdt::SecondaryStruct
• dst() : utility::SimulateMPIMessage
• dst_ : utility::SimulateMPIMessage
• dst_2_src_ : utility::subset_mapping
• dualspace_ : protocols::antibody::design::AntibodyDesignMoverGenerator
• DuboisChiMover() : DuboisChiMover
• DummyMover() : DummyMover
• dump() : job_manager.CommandRunner , PseudoCAMultifunc
• dump_averages() : RDCToolMover
• dump_frequency_ : NativeEnsemble
• dump_onecomp() : TCDock
• dump_pdb() : Bola , Link , MatchAlignInfo , PoseWrap , TCDock
• dump_pdb_ : myspace::DataClass
• dump_pdbs() : SpartaSuperDeviationMover
• dump_pdbs_ : SpartaSuperDeviationMover
• dump_pose() : OutputManager
• dump_pose_freq : OutputManager
• dump_statistics() : OutputManager
• dump_stats_freq : OutputManager
• dump_top_hits() : TCDock
• dump_transformed_pdb() : CrystFFTDock
• duration : formatter< std::chrono::duration< Rep, Period >, Char > , schema.Job
• dy : numeric::interpolation::spline::Point
• dynamic_args_ : dynamic_format_arg_store< Context >
• dynamic_format_arg_store< Context > : basic_format_arg< Context >
• dynamic_memory_usage() : utility::recent_history_queue
• dynamic_specs_handler() : detail::dynamic_specs_handler< ParseContext >
• DynamicIndexRange : ObjexxFCL::Dimension , ObjexxFCL::DynamicIndexRange , ObjexxFCL::IndexRange
• DynamicProfileThis() : basic::DynamicProfileThis