- c -

• C() : Spacegroup
• c2_clash_check() : MatchSet
• c2_iface_check() : MatchSet
• c2_linker_check_dist() : MatchSet
• c2f() : Spacegroup
• c_anchor() : Link
• c_str() : basic_cstring_view< Char > , detail::utf8_to_utf16 , format_int , ObjexxFCL::Fstring
• Cache() : Cache
• CacheableResRotPairFloatMap() : basic::datacache::CacheableResRotPairFloatMap
• CacheableString() : basic::datacache::CacheableString
• CacheableStringFloatMap() : basic::datacache::CacheableStringFloatMap
• CacheableStringIntegerMap() : basic::datacache::CacheableStringIntegerMap
• CacheableStringMap() : basic::datacache::CacheableStringMap
• CacheableUint64MathMatrixFloatMap() : basic::datacache::CacheableUint64MathMatrixFloatMap
• cal_frag_score() : FragMonteCarlo
• calc_bb_E() : HDdesignMover
• calc_coordinate_rmsd() : numeric::alignment::QCPKernel< Real >
• calc_coordinate_superposition() : numeric::alignment::QCPKernel< Real >
• calc_energies() : PhDocking
• calc_energies_and_sasa() : abbinding
• calc_native_stats() : ConstraintStatsMover
• calc_rmsd_Theobald_method() : numeric::alignment::QCPKernel< Real >
• calc_rsd_sasa() : PairDistance
• calc_stats() : ConstraintStatsMover
• calc_stuff() : CalcsTestMover
• calc_unbound_score() : PhDocking
• CalcCdrRms() : CalcCdrRms
• CalcIrms() : CalcIrms
• CalcsTestMover() : CalcsTestMover
• calculate() : AllCrmsd , HPatchByChainNPDCalculator , HPatchNPDCalculator , NBuriedUnsatsCalcultor
• calculate_atom_clashes() : GlycanClashCheckMover
• calculate_auc() : numeric::RocCurve
• calculate_distances() : DistanceMatrix
• calculate_interfaces() : MPInterfaceStatistics
• calculate_path() : PathFinder
• calculate_rho() : Solver , Solver_NU
• calculate_torsions() : TorsionList
• calculate_tracer_level() : basic::TracerImpl
• calculate_visibility() : basic::TracerImpl , basic::TracerImpl::TracerProxyImpl
• Calculator() : numeric::Calculator
• calculator_name() : HPatchByChainNPDCalculatorCreator , HPatchNPDCalculatorCreator , NBuriedUnsatsCalcultorCreator
• CalculatorParser() : numeric::CalculatorParser
• call() : ui::task::NetworkCall
• callback() : ui::task::FunctorNetworkCall
• callback_factory() : nacl_rosetta::RosettaInstance
• can_hold_another() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• can_load() : pyrosetta.protocols.h5_structure_store_provider.H5StructureStoreProvider
• can_write() : pyrosetta.protocols.h5_structure_store_provider.H5StructureStoreProvider
• Canonicalize() : basic::sampling::orientations::Quaternion
• capacity() : detail::buffer< T > , numeric::random::WeightedReservoirSampler< T > , ObjexxFCL::Chunk< T > , utility::heap , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T >
• CapriTotalEnergy() : CapriTotalEnergy
• CapriTwoBodyEnergy() : CapriTwoBodyEnergy
• carbonyl_hbond_search() : HbondZincBackbone
• CArray() : ObjexxFCL::CArray< T >
• CArrayP() : ObjexxFCL::CArrayP< T >
• CartPerturber() : CartPerturber
• CartRefineWrapperMover() : CartRefineWrapperMover
• category_map() : basic::datacache::DataMap
• CaToAllAtom() : CaToAllAtom
• CAtrace() : CAtrace
• CCParam() : CCParam
• cen_fold() : HubDenovo
• CenRelaxMover() : CenRelaxMover
• CenRotCanonicalMover() : CenRotCanonicalMover
• CenRotDockingMover() : CenRotDockingMover
• CenRotRBRelaxMover() : CenRotRBRelaxMover
• CenRotRelaxMover() : CenRotRelaxMover
• CenRotSidechainMover() : CenRotSidechainMover
• center() : ObjexxFCL::Cstring , ObjexxFCL::Fstring , PoseWrap
• center_h() : numeric::linear_algebra::EllipseParameters
• center_k() : numeric::linear_algebra::EllipseParameters
• center_of_mass() : apps::pilot::SampleSecondaryStructureAlignmentMover
• centered() : ObjexxFCL::Cstring , ObjexxFCL::Fstring
• cfg_nd() : numeric::fourier::kiss_fftndr_state
• cfg_r() : numeric::fourier::kiss_fftndr_state
• chain_letter_to_number() : TwoChainInterface , TwoChainTenANeighbors
• ChallengeMover() : ChallengeMover
• changed() : ui::task::Project , ui::task::Task
• channel() : basic::Tracer , basic::TracerImpl
• channel_color() : basic::TracerImpl
• channel_name_color() : basic::TracerImpl
• char_converter() : detail::char_converter< Context >
• char_msg() : utility::SimulateMPIMessage
• char_of() : ObjexxFCL::Fstring
• char_spec_handler() : detail::arg_formatter_base< OutputIt, Char, ErrorHandler >::char_spec_handler
• char_specs_checker() : detail::char_specs_checker< ErrorHandler >
• check() : detail::is_like_std_string< T > , detail::is_tuple_like_< T > , PoseWrap , Tensor
• check_arg_id() : basic_format_parse_context< Char, ErrorHandler > , detail::compile_parse_context< Char, ErrorHandler >
• check_crc() : utility::io::izstream , zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT >
• check_data_size() : zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT >
• check_file_exists() : FragMonteCarlo
• check_filters() : protocols::abinitio::JumpSpecificAbrelax
• check_for_hbonds() : BacksideHbondFinderMover
• check_header() : zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT >
• check_invariants() : numeric::Polynomial_1d
• check_key() : utility::options::OptionCollection
• check_precision() : detail::numeric_specs_checker< ErrorHandler >
• check_restricted_access() : utility::options::Option
• check_sasa() : xtal_water_bunsat
• check_scattach_res() : PoseWrap
• check_sign() : detail::numeric_specs_checker< ErrorHandler >
• check_specs() : utility::options::OptionCollection
• check_table_and_perform_write() : basic::database::schema_generator::Schema
• check_type() : utility::json_spirit::Value_impl< Config >
• check_values() : utility::options::OptionCollection
• checkalign() : MatchAligner , Tet4HMatchAligner
• CheeseFunction() : CheeseFunction
• cheshire_cell() : Spacegroup
• CheshireCell() : CheshireCell
• child() : numeric::expression_parser::ArithmeticASTFactor , SphereNode
• children_begin() : numeric::expression_parser::ArithmeticASTAndClause , numeric::expression_parser::ArithmeticASTExpression , numeric::expression_parser::ArithmeticASTFunction , numeric::expression_parser::ArithmeticASTOrClause , numeric::expression_parser::ArithmeticASTRestAndClause , numeric::expression_parser::ArithmeticASTRestExpression , numeric::expression_parser::ArithmeticASTRestOrClause , numeric::expression_parser::ArithmeticASTRestTerm , numeric::expression_parser::ArithmeticASTTerm
• children_end() : numeric::expression_parser::ArithmeticASTAndClause , numeric::expression_parser::ArithmeticASTExpression , numeric::expression_parser::ArithmeticASTFunction , numeric::expression_parser::ArithmeticASTOrClause , numeric::expression_parser::ArithmeticASTRestAndClause , numeric::expression_parser::ArithmeticASTRestExpression , numeric::expression_parser::ArithmeticASTRestOrClause , numeric::expression_parser::ArithmeticASTRestTerm , numeric::expression_parser::ArithmeticASTTerm
• ChiMover() : ChiMover
• chrono_formatter() : detail::chrono_formatter< FormatContext, OutputIt, Rep, Period >
• Chunk() : ObjexxFCL::Chunk< T >
• chunk_exponent() : ObjexxFCL::ChunkVector< T >
• chunk_size() : ObjexxFCL::ChunkVector< T >
• ChunkExponent() : ObjexxFCL::ChunkExponent
• ChunkVector() : ObjexxFCL::ChunkVector< T >
• Citation() : basic::citation_manager::Citation
• CitationCollection() : basic::citation_manager::CitationCollection
• CitationManager() : basic::citation_manager::CitationManager
• citations() : basic::citation_manager::CitationCollectionList
• CL() : CL
• cl_value() : utility::options::Option , utility::options::ResidueChainVectorOption , utility::options::ScalarOption , utility::options::ScalarOption_T_< K, T > , utility::options::VariantOption< O > , utility::options::VectorOption , utility::options::VectorOption_T_< K, T >
• clash() : numeric::geometry::hashing::MinimalClashHash , numeric::geometry::hashing::xyzStripeHash
• clash_amount() : numeric::geometry::hashing::xyzStripeHash
• clash_ball() : numeric::geometry::hashing::MinimalClashHash
• clash_check() : ClashCheck , MatchSet
• clash_check_ball() : numeric::geometry::hashing::xyzStripeHash
• clash_check_balls() : numeric::geometry::hashing::MinimalClashHash
• clash_check_inv() : MatchSet
• clash_check_naive() : ClashCheck , MatchSet
• clash_check_residue_pairs() : numeric::geometry::hashing::xyzStripeHash
• clash_check_trimer() : ClashCheck
• clash_monomer() : SwapElementsMover1
• clash_not_resid() : numeric::geometry::hashing::xyzStripeHash
• clash_raw() : numeric::geometry::hashing::xyzStripeHash
• clash_score() : ScoreFragmentSetMover
• ClashCheck() : ClashCheck
• clashes() : Bola , Link
• class_includes() : binder::Config
• ClassBinder() : binder::ClassBinder
• ClassKeyMap() : utility::keys::ClassKeyMap< K, T, C >
• ClassKeyVector() : utility::keys::ClassKeyVector< K, T, C >
• classname() : basic::resource_manager::locator::DatabaseResourceLocator , basic::resource_manager::locator::FileListResourceLocator , basic::resource_manager::locator::FileSystemResourceLocator , basic::resource_manager::locator::NullResourceLocator
• ClassVisitor() : ClassVisitor
• clean_jump_sample() : protocols::jumping::SpecificJumpSetup
• cleaned() : utility::options::OptionCollection
• cleanupTestCase() : FunctorTest , NodeTest
• clear() : basic::citation_manager::Citation , basic::datacache::DataCache< Data > , basic::resource_manager::ResourceManager
• Clear() : basic::sampling::orientations::QuatSet
• clear() : binder::IncludeSet , detail::buffer< T > , dynamic_format_arg_store< Context > , numeric::IntervalSet< T > , numeric::random::WeightedSampler , numeric::sphericalVector< T >
• Clear() : numeric::VoxelGrid< T >
• clear() : numeric::xyzMatrix< T > , numeric::xyzTriple< T > , numeric::xyzVector< T > , ObjexxFCL::CArray< T > , ObjexxFCL::CArrayP< T > , ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< T > , ObjexxFCL::Dimension , ObjexxFCL::DynamicIndexRange , ObjexxFCL::FArray1< T > , ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::FArray< T > , ObjexxFCL::FArrayInitializer< T, Array > , ObjexxFCL::Fstring , ObjexxFCL::IndexRange , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T > , ObjexxFCL::StaticIndexRange , pseudoTraceRecords , pyrosetta.bindings.pose.PoseScoreAccessor , pyrosetta.bindings.pose.ResidueLabelAccessor , pyrosetta.bindings.scores.core.PoseCacheAccessor , pyrosetta.bindings.scores.energies.EnergiesAccessor , pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor , pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase , pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor , pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase , pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor , pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor , SetOfClusters , utility::Bound< T > , utility::file::FileName , utility::file::PathName , utility::graph::ArrayPool< T > , utility::in_place_list< T > , utility::io::FileContentsMap , utility::io::icstream , utility::io::irstream , utility::io::izstream , utility::io::ocstream , utility::io::orstream , utility::io::ozstream , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyLookup< K > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::options::Option , utility::options::ScalarOption , utility::options::ScalarOption_T_< K, T > , utility::options::VariantOption< O > , utility::options::VectorOption , utility::options::VectorOption_T_< K, T > , utility::recent_history_queue , utility::signals::SignalHub< ReturnType, Signal > , utility::tag::Tag
• clear_buffer() : utility::signals::BufferedSignalHub< ReturnType, Signal >
• clear_citations() : basic::citation_manager::CitationManager
• clear_input_files() : utility::Inline_File_Provider
• clear_masked_keys() : pyrosetta.distributed.cluster.logging_handlers.MsgpackHmacSocketHandler
• clear_no_notify() : ObjexxFCL::Dimension , ObjexxFCL::DynamicIndexRange
• clear_processed_msgs() : utility::SimulateMPIData
• clear_rms() : numeric::model_quality::RmsData
• clear_tokens() : utility::signals::TokenHub< ReturnType, Signal >
• ClearPoseHeader() : ClearPoseHeader
• client_connected() : ui::network::Bowman , ui::network::BowmanThread
• client_disconnected() : ui::network::Bowman , ui::network::BowmanThread
• cloak_and_setup() : HDdesignMover
• clone() : AbsFunc , apps::pilot::frankdt::concatenate_poses , apps::pilot::frankdt::MakeSegmentFile , apps::pilot::frankdt::segment_file_generator , apps::pilot::frankdt::SmartSEWINGTester , apps::pilot::frankdt::steric_fusion_scan , BacksideHbondFinderMover , basic::citation_manager::AuthorNames , basic::citation_manager::Citation , basic::citation_manager::CitationCollection , basic::citation_manager::UnpublishedModuleAuthor , basic::citation_manager::UnpublishedModuleInfo , basic::datacache::CacheableData , basic::datacache::CacheableResRotPairFloatMap , basic::datacache::CacheableString , basic::datacache::CacheableStringFloatMap , basic::datacache::CacheableStringIntegerMap , basic::datacache::CacheableStringMap , basic::datacache::CacheableUint64MathMatrixFloatMap , basic::datacache::DiagnosticData , basic::datacache::WriteableCacheableMap , basic::MetricValue< T > , basic::MetricValueBase , basic::tensorflow_manager::RosettaTensorflowProtocolBase , Benchmark , CalcsTestMover , CapriData , CapriTotalEnergy , CapriTwoBodyEnergy , CloseContactWithResidue , ClusterCycDisulf , CoupledFunc , DesignGlycansProtocol , DockGlycansProtocol , ExemplarMover , ExposedStrandMover , FoldTreeOutputter , GlycanClashCheckMover , GlycomutagenesisProtocol , HDdesignMover , HDmakerMover , HelicalPdbGeneratorMover , HemeBindingMover , InjectorMover , InterfaceDDGMover , InterfaceDDGMutationTask , InterfaceStrandFinderMover , LoopHash_Analyze , LoopHashRelax_Sampler , MakeSegmentFileMPI , MetalSiteFinderMover , Minimize , MinPackMinMover , MPFoldingMover , MyCI1B , MyMover , MyScoreMover , NCMinimize
• Clone() : numeric::interpolation::spline::BicubicSpline
• clone() : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::CompoundInterpolator , numeric::interpolation::spline::CubicSpline , numeric::interpolation::spline::Interpolator , numeric::interpolation::spline::PolycubicSpline< N > , numeric::interpolation::spline::PolycubicSpline< 1 > , numeric::interpolation::spline::PolycubicSpline< 2 > , numeric::interpolation::spline::PolycubicSplineBase , numeric::interpolation::spline::SimpleInterpolator
• Clone() : numeric::interpolation::spline::TricubicSpline
• clone() : numeric::linear_algebra::EllipseParameters
• Clone() : numeric::MathMatrix< T >
• clone() : numeric::MathNTensor< T, N > , numeric::MathNTensorBase< T > , numeric::MathVector< T > , ObjexxFCL::Dimension , ObjexxFCL::DimensionExpression , ObjexxFCL::DimensionExpressionCon , ObjexxFCL::DimensionExpressionCube , ObjexxFCL::DimensionExpressionDiv , ObjexxFCL::DimensionExpressionMax , ObjexxFCL::DimensionExpressionMin , ObjexxFCL::DimensionExpressionMul , ObjexxFCL::DimensionExpressionPow , ObjexxFCL::DimensionExpressionRef , ObjexxFCL::DimensionExpressionSquare , ObjexxFCL::DimensionExpressionSub , ObjexxFCL::DimensionExpressionSum , PepMinMover , PeptoidDihedralGrabber , PeptoidRotamerRecoverer , Protocol_MolecularDynamics , pyrosetta.distributed.packed_pose.core.PackedPose , RamaTestMover , RepFunc , RMS_ScoringScheme , RNA_ScoreMover , SameResidueTypeConstraint , ScTrials , SequenceCoords , SerializablePose , SymFixbbMover , test.T850_SubClassing.MyNewCI1B , ui::network::Argument , ui::network::BooleanArgument , ui::network::FloatArgument , ui::network::IntegerArgument , ui::network::PathArgument , ui::network::StringArgument , ui::task::Task , ui::util::BadFileFormatException
• Clone() : utility::graph::RingDetection< Graph >
• clone() : utility::io::GeneralFileContents , utility::io::GeneralFileContentsVector , utility::keys::AutoKey< O, S, C > , utility::keys::Key , utility::keys::UserKey< O, S, C > , utility::options::AnyOption< T > , utility::options::AnyOptionKey , utility::options::AnyVectorOption< T > , utility::options::AnyVectorOptionKey , utility::options::BooleanOption , utility::options::BooleanOptionKey , utility::options::BooleanVectorOption , utility::options::BooleanVectorOptionKey , utility::options::FileOption , utility::options::FileOptionKey , utility::options::FileVectorOption , utility::options::FileVectorOptionKey , utility::options::IntegerOption , utility::options::IntegerOptionKey , utility::options::IntegerVectorOption , utility::options::IntegerVectorOptionKey , utility::options::Option , utility::options::OptionCollection , utility::options::OptionKey , utility::options::PathOption , utility::options::PathOptionKey , utility::options::PathVectorOption , utility::options::PathVectorOptionKey , utility::options::RealOption , utility::options::RealOptionKey , utility::options::RealVectorOption , utility::options::RealVectorOptionKey , utility::options::ResidueChainVectorOption , utility::options::ResidueChainVectorOptionKey , utility::options::ScalarOption , utility::options::ScalarOption_T_< K, T > , utility::options::ScalarOptionKey , utility::options::StringOption , utility::options::StringOptionKey , utility::options::StringVectorOption , utility::options::StringVectorOptionKey , utility::options::VectorOption , utility::options::VectorOption_T_< K, T > , utility::options::VectorOptionKey , utility::tag::Tag , XMLprinterMover
• closability_score() : ClosabilityScore , ScoreFragmentSetMover
• ClosabilityScore() : ClosabilityScore
• close() : buffered_file , options.KeepSameFile , pyrosetta.distributed.cluster.logging_handlers.MsgpackHmacSocketHandler , pyrosetta.distributed.cluster.logging_handlers.MultiSocketHandler , utility::io::izstream , utility::io::mpi_stream::basic_mpi_ostream< Elem, Tr, ElemA, ByteT, ByteAT > , utility::io::ozstream
• close_loops() : protocols::abinitio::JumpSpecificAbrelax
• close_trgfile() : myspace::DataClass
• CloseContactWithResidue() : CloseContactWithResidue
• closest_crystallographic_water_dist() : xtal_water_bunsat
• closest_match() : numeric::coordinate_fitting::FlatLookup< QueryType, EntryType, Real >
• closest_match_subset() : numeric::coordinate_fitting::FlatLookup< QueryType, EntryType, Real >
• ClosureMover() : ClosureMover
• CloudArchiveManagerWrapper() : CloudArchiveManagerWrapper
• Cluster() : Cluster
• cluster() : numeric::AgglomerativeHierarchicalClusterer
• cluster_frags() : DockFragmentsMover
• ClusterCycDisulf() : ClusterCycDisulf
• ClusteringTreeNode() : numeric::ClusteringTreeNode
• ClusterOptions() : numeric::ClusterOptions
• CnlRes() : CnlRes
• co_authors() : basic::citation_manager::Citation
• code() : binder::Binder , utility::keys::AutoKey< O, S, C > , utility::keys::Key , utility::keys::UserKey< O, S, C > , utility::keys::VariantKey< K > , utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VariantOption< O > , utility::options::VectorOption_T_< K, T >
• coefficients() : numeric::Polynomial_1d
• coefLoc() : numeric::fourier::SO3coeffs
• col() : numeric::xyzMatrix< T >
• col_x() : numeric::xyzMatrix< T >
• col_y() : numeric::xyzMatrix< T >
• col_z() : numeric::xyzMatrix< T >
• collapse() : numeric::MultiDimensionalHistogram
• CollectCoordinates() : CollectCoordinates
• color_type() : detail::color_type
• ColorByLipidType() : ColorByLipidType
• ColPointers() : numeric::ColPointers< T >
• cols() : numeric::xyzMatrix< T >
• cols_constructor() : numeric::xyzMatrix< T >
• ColsPointer() : numeric::ColsPointer< T >
• Column() : basic::database::schema_generator::Column
• columnCount() : ui::network::BowmanModel , ui::task::FileTableModel , ui::task::ProjectModel , ui::task::ProjectTasksModel
• columns() : basic::database::schema_generator::ForeignKey , basic::database::schema_generator::Index , basic::database::schema_generator::PrimaryKey
• ColVectors() : numeric::ColVectors< T >
• com() : MatchSet
• Combine_Tags_Info() : Combine_Tags_Info
• CombinePaths() : utility::graph::RingDetection< Graph >
• commit() : utility::Version
• commit_transaction() : utility::sql_database::session
• common_type() : utility::tag::XMLSchemaType
• comparable() : utility::keys::AutoKey< O, S, C > , utility::keys::Key , utility::keys::UserKey< O, S, C >
• comparator() : numeric::AgglomerativeHierarchicalClusterer , numeric::AverageLinkClusterer , numeric::CompleteLinkClusterer , numeric::SingleLinkClusterer
• compare() : basic_string_view< Char > , sidechain_cst_3.Residue
• CompareKDPoints() : numeric::kdtree::CompareKDPoints
• ComparingTracer() : basic::ComparingTracer
• compatible_sheet() : DomainDescription
• compile_parse_context() : detail::compile_parse_context< Char, ErrorHandler >
• compiled_format() : detail::compiled_format< S, Args >
• compiled_format_base() : detail::compiled_format_base< S, typename > , detail::compiled_format_base< S, enable_if_t< is_compile_string< S >::value > >
• complete_larval_job_maturation() : FixbbJobQueen , RelaxJobQueen , StepWiseJobQueen
• complex() : InterfaceDDGBindInnerJob , InterfaceDDGMutationTask
• complex_interface_optimize() : complex_interface_optimize
• complex_type_name_for_loader() : basic::resource_manager::ResourceLoaderFactory
• complex_type_name_for_locator() : basic::resource_manager::ResourceLocatorFactory
• complex_type_name_for_resource_def() : basic::resource_manager::ResourceManager
• complex_type_naming_func() : utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl , utility::tag::XMLSchemaSimpleSubelementList
• complex_typename_for_element() : utility::tag::XMLSchemaSimpleSubelementList
• composite_real() : pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor
• composite_string() : pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor
• CompoundInterpolator() : numeric::interpolation::spline::CompoundInterpolator
• compress() : ObjexxFCL::Cstring , ObjexxFCL::Fstring
• compress_kwargs() : pyrosetta.distributed.cluster.serialization.Serialization
• compress_object() : pyrosetta.distributed.cluster.serialization.Serialization
• compress_packed_pose() : pyrosetta.distributed.cluster.serialization.Serialization
• compressed() : ObjexxFCL::Cstring , ObjexxFCL::Fstring , utility::io::icstream , utility::io::irstream , utility::io::izstream , utility::io::ocstream , utility::io::orstream , utility::io::ozstream
• compute() : numeric::Calculator , numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• compute_com_vect() : MainWindow
• compute_delta() : detail::dragonbox::cache_accessor< double > , detail::dragonbox::cache_accessor< float >
• compute_in_place() : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• compute_Irmsd() : compute_Irmsd
• compute_lb_function_solution() : numeric::interpolation::spline::Interpolator
• compute_left_endpoint_for_shorter_interval_case() : detail::dragonbox::cache_accessor< double > , detail::dragonbox::cache_accessor< float >
• compute_mul() : detail::dragonbox::cache_accessor< double > , detail::dragonbox::cache_accessor< float >
• compute_mul_parity() : detail::dragonbox::cache_accessor< double > , detail::dragonbox::cache_accessor< float >
• compute_right_endpoint_for_shorter_interval_case() : detail::dragonbox::cache_accessor< double > , detail::dragonbox::cache_accessor< float >
• compute_round_up_for_shorter_interval_case() : detail::dragonbox::cache_accessor< double > , detail::dragonbox::cache_accessor< float >
• compute_ub_function_solution() : numeric::interpolation::spline::Interpolator
• computed_last_chunk_size() : ObjexxFCL::ChunkVector< T >
• computed_n_chunk() : ObjexxFCL::ChunkVector< T >
• computeGunnTuples() : GunnTest
• ComputeProfileMover() : ComputeProfileMover
• ComputeSAXSSpectrum() : ComputeSAXSSpectrum
• ComputeTotalDistCst() : protocols::abinitio::ComputeTotalDistCst
• concatenate_poses() : apps::pilot::frankdt::concatenate_poses
• ConcertedTorsionMover() : ConcertedTorsionMover
• condition() : numeric::expression_parser::ITEExpression
• Config() : binder::Config
• ConfigDialog() : ui::config::ConfigDialog
• configure() : ui::ui_protocols::helical_bundle::HelixOptionWidget
• conjugate() : numeric::Quaternion< T >
• conjugated() : numeric::Quaternion< T >
• connect() : utility::signals::SignalHub< ReturnType, Signal >
• connect_task_and_nodes() : ui::task::TaskSyncer_NodeStrategy
• connect_tokenize() : utility::signals::TokenHub< ReturnType, Signal >
• consider_sample() : numeric::random::WeightedReservoirSampler< T >
• consolidate() : SetOfClusters
• const_begin() : utility::graph::DirectedEdgeList , utility::graph::EdgeList
• const_edge() : utility::graph::DirectedEdgeListElement , utility::graph::EdgeListElement
• const_edge_list_begin() : utility::graph::Digraph , utility::graph::DirectedNode , utility::graph::Graph , utility::graph::LowMemGraph< _LMNode, _LMEdge > , utility::graph::LowMemNode , utility::graph::Node
• const_edge_list_end() : utility::graph::Digraph , utility::graph::DirectedNode , utility::graph::Graph , utility::graph::LowMemGraph< _LMNode, _LMEdge > , utility::graph::LowMemNode , utility::graph::Node
• const_end() : utility::graph::DirectedEdgeList , utility::graph::EdgeList
• const_incoming_edge_list_begin() : utility::graph::DirectedNode
• const_incoming_edge_list_end() : utility::graph::DirectedNode
• const_iterator() : numeric::geometry::hashing::xyzStripeHash::const_iterator
• const_last() : utility::graph::DirectedEdgeList , utility::graph::EdgeList
• const_location() : numeric::kdtree::KDPoint
• const_lower_edge_list_begin() : utility::graph::Node
• const_lower_edge_list_end() : utility::graph::Node
• const_next() : utility::graph::DirectedEdgeListElement , utility::graph::EdgeListElement
• const_outgoing_edge_list_begin() : utility::graph::DirectedNode
• const_outgoing_edge_list_end() : utility::graph::DirectedNode
• const_previous() : utility::graph::DirectedEdgeListElement , utility::graph::EdgeListElement
• const_seed() : basic::random::RandomGeneratorSettings
• const_upper_edge_list_begin() : utility::graph::Node , utility::graph::UEVertex< V, E >
• const_upper_edge_list_end() : utility::graph::Node , utility::graph::UEVertex< V, E >
• constant() : ObjexxFCL::Dimension , ObjexxFCL::DimensionExpression , ObjexxFCL::DimensionExpressionCon , ObjexxFCL::DimensionExpressionCube , ObjexxFCL::DimensionExpressionDiv , ObjexxFCL::DimensionExpressionMax , ObjexxFCL::DimensionExpressionMin , ObjexxFCL::DimensionExpressionMul , ObjexxFCL::DimensionExpressionPow , ObjexxFCL::DimensionExpressionRef , ObjexxFCL::DimensionExpressionSquare , ObjexxFCL::DimensionExpressionSub , ObjexxFCL::DimensionExpressionSum
• ConstDataMap() : basic::datacache::ConstDataMap
• constrain_and_minimize() : dsRNA_grow
• constrain_zinc() : HbondZinc , HbondZincBackbone
• Constraint() : basic::database::schema_generator::Constraint
• ConstraintConfig() : ConstraintConfig
• ConstraintStatsMover() : ConstraintStatsMover
• construct() : boost::unordered_object_pool< T, UserAllocator >
• construct_from_basis() : pointGroupHit
• contain() : ObjexxFCL::DynamicIndexRange , ObjexxFCL::IndexRange , ObjexxFCL::StaticIndexRange
• contain_nic() : ObjexxFCL::DynamicIndexRange
• contains() : numeric::geometry::BoundingBox< T > , numeric::geometry::hashing::SixDCoordinateBinner , ObjexxFCL::DynamicIndexRange , ObjexxFCL::FArray1< T > , ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::IndexRange , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T > , pseudoTrace , utility::vectorL< L, T, A >
• contains_composite_elements() : utility::json_spirit::Generator< Value_type, Ostream_type >
• contains_symmop() : pointGroupHit
• continue_at_dimension() : utility::FixedSizeLexicographicalIterator< S > , utility::LexicographicalIterator
• contract() : numeric::geometry::BoundingBox< T >
• control_has_changed() : ui::ui_protocols::helical_bundle::HelicalBundleDialogueWidget , ui::ui_protocols::helical_bundle::HelixOptionWidget
• control_has_changed_requiring_pose_rebuild() : ui::ui_protocols::helical_bundle::HelicalBundleDialogueWidget
• control_schedule() : myspace::Scheduler
• convert() : SomeThingGetter , utility::py::COP_to_Python_converter< T > , VecContains , VecLen , VecMaxElement , VecMean , VecMinElement
• converter() : detail::converter
• coord() : SequenceCoords
• CoordinateArray_RMSD_FlatLookup() : numeric::coordinate_fitting::CoordinateArray_RMSD_FlatLookup< Real >
• coords() : SequenceCoords
• copy() : ObjexxFCL::Fstring
• copy_array_contents() : utility::graph::ArrayPoolElement< T >
• copy_connectivity() : utility::graph::Digraph , utility::graph::Graph
• copy_coordinates() : CollectCoordinates
• copy_data() : DockGlycansProtocol , GlycomutagenesisProtocol
• copy_from() : utility::graph::DirectedEdge , utility::graph::DirectedNode , utility::graph::Edge , utility::graph::Node , utility::graph::UpperEdgeGraph< V, E > , utility::options::Option , utility::options::ResidueChainVectorOption , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• copy_leaf_ids() : numeric::ClusteringTreeNode
• copy_member_ids() : numeric::ClusteringTreeNode
• copy_native_structure() : protocols::abinitio::Application , protocols::abinitio::JumpSpecificAbrelax
• copy_structure() : protocols::abinitio::JumpSpecificAbrelax
• copyStructure() : protocols::abinitio::ApplicationContext
• correct() : numeric::DietNode< T > , numeric::DiscreteIntervalEncodingTree< T >
• count() : detail::buffer_traits , detail::counting_buffer< T > , detail::counting_iterator , detail::fixed_buffer_traits , detail::iterator_buffer< OutputIt, T, Traits > , detail::truncating_iterator_base< OutputIt > , numeric::model_quality::RmsData , pyrosetta.distributed.utility.log.ProgressLogger
• count_alignment() : ChallengeMover
• count_clashes() : SwapElementsMover2
• count_dynamic_memory() : utility::graph::Digraph , utility::graph::DirectedEdge , utility::graph::DirectedNode , utility::graph::Edge , utility::graph::Graph , utility::graph::LowMemEdge , utility::graph::LowMemGraph< _LMNode, _LMEdge > , utility::graph::LowMemNode , utility::graph::Node
• count_static_memory() : utility::graph::Digraph , utility::graph::DirectedEdge , utility::graph::DirectedNode , utility::graph::Edge , utility::graph::Graph , utility::graph::LowMemEdge , utility::graph::LowMemGraph< _LMNode, _LMEdge > , utility::graph::LowMemNode , utility::graph::Node
• CountContact() : CountContact
• Counter() : numeric::geometry::hashing::Counter
• counting_buffer() : detail::counting_buffer< T >
• counting_iterator() : detail::counting_iterator
• counts() : NonceHistogram , numeric::MultiDimensionalHistogram
• CoupledFunc() : CoupledFunc
• coval() : utility::heap
• coval_for_val() : utility::heap
• CovalentPeptidomimeticCreator() : CovalentPeptidomimeticCreator
• CovalentPeptidomimeticDockDesign() : CovalentPeptidomimeticDockDesign
• covering_radius_degrees() : SphereSample
• cpu2gpu() : CL
• crash_log() : utility::excn::Exception , utility::excn::FileNotFound , utility::excn::UserCorrectableIssue , utility::graph::EXCN_Stop_BFS
• Create() : GetURLHandler
• create() : ui::network::Argument , utility::factory::Factory< P > , utility::tag::Tag
• create_all_nested_namespaces() : binder::Context
• create_data() : basic::datacache::WriteableCacheableDataCreator
• create_energy_method() : MyCI1B_Creator , test.T850_SubClassing.MyNewCI1B_Creator
• create_expression_tree() : numeric::expression_parser::ExpressionCreator
• create_extra_output() : HECTMover
• create_impl() : basic::MemTracer , basic::Tracer
• create_input_widget() : ui::network::Argument , ui::network::BooleanArgument , ui::network::FloatArgument , ui::network::IntegerArgument , ui::network::PathArgument , ui::network::StringArgument
• create_instance() : utility::io::GeneralFileManager , utility::io::GeneralFileManagerVector
• create_jump_sample() : protocols::jumping::LibraryJumpSetup , protocols::jumping::SpecificJumpSetup
• create_new_block() : utility::graph::ArrayPool< T >
• create_new_edge() : utility::graph::Digraph , utility::graph::Graph
• create_new_node() : utility::graph::Digraph , utility::graph::Graph
• create_options() : protocols::antibody::AntibodyInfoRMOptionsCreator
• create_output_context_menu() : ui::task::TaskView
• create_pose() : MainWindow
• create_residue_from_olc() : MPDomainAssembly
• create_residue_from_resn() : MPDomainAssembly
• create_resource() : basic::resource_manager::ResourceLoader , basic::resource_manager::ResourceManager , protocols::surface_docking::AntibodyInfoRMLoader
• create_resource_loader() : basic::resource_manager::ResourceLoaderCreator , basic::resource_manager::ResourceLoaderFactory , protocols::antibody::AntibodyInfoRMLoaderCreator
• create_resource_locator() : basic::resource_manager::locator::DatabaseResourceLocatorCreator , basic::resource_manager::locator::FileListResourceLocatorCreator , basic::resource_manager::locator::FileSystemResourceLocatorCreator , basic::resource_manager::locator::NullResourceLocatorCreator , basic::resource_manager::ResourceLocatorCreator , basic::resource_manager::ResourceLocatorFactory , basic::resource_manager::ResourceManager
• create_resource_manager() : basic::resource_manager::ResourceManagerCreator
• create_resource_manager_from_options_system() : basic::resource_manager::ResourceManagerFactory
• create_simple_tasks() : pyrosetta.tests.distributed.cluster.test_smoke.RuntimeTest
• create_subelement() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• create_sync_tree() : ui::task::TaskSyncer_NodeStrategy
• create_task() : pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest
• create_tasks() : pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest
• create_vertices() : utility::graph::UpperEdgeGraph< V, E >
• CreateASTConsumer() : BinderFrontendAction
• CreateInstance() : nacl_rosetta::RosettaModule
• creators() : utility::factory::WidgetFactory< Creator >
• cross() : MatchSet , numeric::xyzTriple< T > , numeric::xyzVector< T >
• cross_homodimer() : MatchSet
• cross_product() : numeric::xyzTriple< T > , numeric::xyzVector< T >
• CrystCluster() : CrystCluster
• CrystDesign() : CrystDesign
• CrystFFTDock() : CrystFFTDock
• CrystHbondsReporter() : CrystHbondsReporter
• CrystRelax() : CrystRelax
• CSI_Sequence() : utility::CSI_Sequence
• CST() : CST
• Cstring() : ObjexxFCL::Cstring
• cstring_spec_handler() : detail::arg_formatter_base< OutputIt, Char, ErrorHandler >::cstring_spec_handler
• cstring_type_checker() : detail::cstring_type_checker< ErrorHandler >
• cstset() : ConstraintToolMover
• CubicPolynomial() : numeric::CubicPolynomial
• CubicSpline() : numeric::interpolation::spline::CubicSpline
• curr_num_in_recent_history() : utility::recent_history_queue
• current_callback_object() : utility::py::PyExitCallback
• current_job() : protocols::jd2::RECONMPIJobDistributor
• current_links() : utility::signals::SignalHub< ReturnType, Signal >
• custom_formatter() : detail::custom_formatter< Context >
• custom_params_file() : ui::ui_protocols::helical_bundle::HelicalBundleDialogueWidget
• custom_params_file_selected() : ui::ui_protocols::helical_bundle::HelicalBundleDialogueWidget
• custom_type_name() : utility::tag::XMLSchemaType
• CustomAbinitio() : protocols::abinitio::CustomAbinitio
• CustomFragmentMover() : apps::pilot::CustomFragmentMover
• CustomMover() : CustomMover
• cut_from_map() : DockFragmentsMover
• CycBBMover() : CycBBMover