- p -

• pack_rotamers_mover() : HemeBindingMover
• pack_sidechains() : MinPackMin
• package() : utility::Version
• Packing_energies() : Packing_energies
• PackingAngle() : PackingAngle
• paintEvent() : MainWindow
• paintGL() : MainWindow , ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• Pair_impl() : utility::json_spirit::Pair_impl< Config >
• pair_query() : pyrosetta.protocols.structure_search.StructureSearchManager
• PairDistance() : PairDistance
• PairScore() : PairScore
• parameter_to_str() : pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest
• params_file() : ui::ui_protocols::helical_bundle::HelicalBundleDialogueWidget
• parent() : numeric::ClusteringTreeNode , numeric::kdtree::KDNode , SphereNode , ui::network::BowmanModel , ui::task::Node , ui::task::ProjectModel , ui::util::TreeNodeModel< T > , utility::file::PathName
• parse() : detail::fallback_formatter< T, Char, enable_if_t< is_streamable< T, Char >::value > > , dynamic_formatter< Char > , formatter< bytes > , formatter< detail::bigint > , formatter< std::chrono::duration< Rep, Period >, Char > , formatter< std::tm, Char > , formatter< T, Char, enable_if_t< detail::type_constant< T, Char >::value !=detail::type::custom_type > > , formatter< T, Char, enable_if_t< fmt::is_range< T, Char >::value &&(has_formatter< detail::value_type< T >, format_context >::value||detail::has_fallback_formatter< detail::value_type< T >, format_context >::value) > > , formatter< tuple_arg_join< Char, T... >, Char > , formatter< TupleT, Char, enable_if_t< fmt::is_tuple_like< TupleT >::value > > , formatting_base< Char > , numeric::expression_parser::ArithmeticASTAndClause , numeric::expression_parser::ArithmeticASTExpression , numeric::expression_parser::ArithmeticASTFactor , numeric::expression_parser::ArithmeticASTFunction , numeric::expression_parser::ArithmeticASTOrClause , numeric::expression_parser::ArithmeticASTRestAndClause , numeric::expression_parser::ArithmeticASTRestExpression , numeric::expression_parser::ArithmeticASTRestOrClause , numeric::expression_parser::ArithmeticASTRestTerm , numeric::expression_parser::ArithmeticASTTerm , numeric::expression_parser::ArithmeticASTValue , printf_formatter< T >
• parse_authors() : basic::citation_manager::Citation
• parse_config_file() : ConstraintConfig
• parse_context() : basic_printf_context< OutputIt, Char >
• parse_flags() : basic_printf_context< OutputIt, Char >
• parse_header() : basic_printf_context< OutputIt, Char >
• parse_job_definition_tags() : FixbbJobQueen
• parse_my_tag() : basic::resource_manager::locator::DatabaseResourceLocator , basic::resource_manager::locator::FileListResourceLocator , basic::resource_manager::locator::FileSystemResourceLocator , basic::resource_manager::locator::NullResourceLocator , basic::resource_manager::ResourceLocator , ChiMover , LigChiMover , protocols::antibody::AntibodyInfoRMOptions
• parse_options() : HECTMover
• parse_residues() : ConstraintConfig
• parse_sequence() : ConstraintConfig
• parse_sfxns_and_taskops() : FixbbJobQueen
• parse_strand_ids() : ExposedStrandMover
• parse_string_entry() : basic::citation_manager::Citation
• parse_year() : basic::citation_manager::Citation
• parsed_protocol() : pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask
• parseFileSize() : utility::io::TarParser
• parser() : numeric::CalculatorParser , pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask
• partners_from_info() : abbinding
• parts() : detail::compiled_format_base< S, typename > , detail::compiled_format_base< S, enable_if_t< is_compile_string< S >::value > >
• path() : utility::file::FileName , utility::file::PathName
• PathArgument() : ui::network::PathArgument
• PathFinder() : PathFinder
• PathName() : utility::file::PathName
• PathologicalKinematicPerturber() : PathologicalKinematicPerturber
• PathOption() : utility::options::PathOption
• PathOptionKey() : utility::options::PathOptionKey
• PathVectorOption() : utility::options::PathVectorOption
• PathVectorOptionKey() : utility::options::PathVectorOptionKey
• PausableSignalHub() : utility::signals::PausableSignalHub< ReturnType, Signal >
• pause() : ui::network::Bowman , utility::signals::PausableSignalHub< ReturnType, Signal >
• pausing() : utility::signals::PausableSignalHub< ReturnType, Signal >
• PcaEvaluator() : protocols::abinitio::PcaEvaluator
• pdb_from_level() : SphereSample
• PDB_IOBenchmark() : PDB_IOBenchmark
• pdbline() : pdbline
• pdbname() : Spacegroup
• peek() : utility::io::icstream , utility::io::irstream , utility::io::izstream
• PepMinMover() : PepMinMover
• PeptiodMovieMover() : PeptiodMovieMover
• PeptoidDesignMover() : PeptoidDesignMover
• PeptoidDihedralGrabber() : PeptoidDihedralGrabber
• PeptoidRotamerRecoverer() : PeptoidRotamerRecoverer
• per_residue_probabilities() : pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor
• per_residue_real() : pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor
• per_residue_string() : pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor
• PerformanceBenchmark() : PerformanceBenchmark
• period_certification() : numeric::random::mt19937_RG
• periodic() : numeric::interpolation::Histogram< X, Y >
• periodic_range() : JDmover
• Permute() : basic::sampling::orientations::Permute
• perspectiveGL() : MainWindow
• perturb_chain() : NullKinematicPerturber , PathologicalKinematicPerturber , UniformPerturber
• perturber_type() : NullKinematicPerturber , PathologicalKinematicPerturber , UniformPerturber
• Perturbers1() : Perturbers1
• Perturbers2() : Perturbers2
• PerturbStruct() : PerturbStruct
• PhDocking() : PhDocking
• phi() : Mode , numeric::EulerAngles< T > , numeric::sphericalVector< T >
• phi_degrees() : numeric::EulerAngles< T >
• phi_radians() : numeric::EulerAngles< T >
• PhProtocol() : PhProtocol
• pi() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_2() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_2_over_3() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_3_over_4() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_over_180() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_over_2() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_over_3() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_over_4() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pick_consensus_AA() : protocols::jd2::RECONMPIJobDistributor
• pick_fragments() : SwapElementsMover1 , SwapElementsMover2
• pick_frags() : ThisApplication
• pick_hashing_res() : myspace::Scheduler
• pick_random_chunk() : apps::pilot::MultiTemplateAlignChunkMover
• pick_random_template() : apps::pilot::MultiTemplateAlignChunkMover , ChallengeMover
• pick_sequence() : ConstraintConfig
• pick_sse() : PickSSE
• PickBAB() : PickBAB
• PickSSE() : PickSSE
• pivot() : numeric::MathMatrix< T >
• place_c() : BruteFunGroupTK , FunGroupTK , KinFunGroupTK
• place_n() : BruteFunGroupTK , BruteRotSel , FunGroupTK , KinFunGroupTK , KinRotSel , RotSel
• PNode() : ui::task::PNode
• POD2() : POD2
• POD3() : POD3
• POD4() : POD4
• POD5() : POD5
• POD6() : POD6
• point() : numeric::HomogeneousTransform< T >
• Point() : numeric::interpolation::spline::Point
• point() : numeric::kdtree::KDNode
• point_clicked() : ui::viewers::ScoreFileView
• Pointers_and_References() : Pointers_and_References
• pointGroupHit() : pointGroupHit
• poll() : job_manager.CommandRunner
• poll_frequency() : ServerInfo
• PolycubicSpline() : numeric::interpolation::spline::PolycubicSpline< N > , numeric::interpolation::spline::PolycubicSpline< 1 > , numeric::interpolation::spline::PolycubicSpline< 2 >
• PolycubicSplineBase() : numeric::interpolation::spline::PolycubicSplineBase
• Polynomial_1d() : numeric::Polynomial_1d
• pop() : InterfaceHitDatabase , job_manager.StatusWindow , numeric::expression_parser::TokenSet , ObjexxFCL::internal::ObserverGraph , utility::graph::NegSpaceElement< T > , utility::vectorL< L, T, A >
• pop_back() : ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< T > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyVector< K, T >
• pop_masked_key() : pyrosetta.distributed.cluster.logging_handlers.MsgpackHmacSocketHandler , pyrosetta.distributed.cluster.logging_handlers.MultiSocketHandler
• pop_next_message_for_node_of_type() : utility::SimulateMPIData
• pop_next_message_of_type() : utility::SimulateMPIData
• pop_node() : utility::tag::XMLErrorHandler
• pop_status() : job_manager.AppWindow
• populate_doi_rosetta_citation_map() : basic::citation_manager::CitationManager
• pos_in_history_queue() : utility::recent_history_queue
• pose() : pyrosetta.distributed.packed_pose.core.PackedPose , SlideTask , ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• pose_from_job() : InterfaceDDGBindJobInputter
• pose_name() : HBondReporter
• pose_num() : sidechain_cst_3.Residue
• pose_to_xyz() : SimulateCryoMover
• PoseEditor() : ui::widgets::PoseEditor
• PosePyObserver() : PosePyObserver
• poses() : pyrosetta.io.silent_file_map.SilentFileMap
• PoseWrap() : PoseWrap
• positive() : ObjexxFCL::DynamicIndexRange , ObjexxFCL::IndexRange
• positive_value() : ObjexxFCL::IndexRange
• post_submit() : ui::task::TaskSyncer_NodeStrategy
• PostMessage_from_main_thread() : nacl_rosetta::RosettaInstance
• PostStringToBrowser() : nacl_rosetta::RosettaInstance
• precision() : basic::Tracer , numeric::IOTraits< T > , numeric::IOTraits< double > , numeric::IOTraits< float > , numeric::IOTraits< int > , numeric::IOTraits< long double > , numeric::IOTraits< long int > , numeric::IOTraits< short int > , numeric::IOTraits< unsigned int > , numeric::IOTraits< unsigned long int > , numeric::IOTraits< unsigned short int > , ObjexxFCL::TypeTraits< T > , ObjexxFCL::TypeTraits< double > , ObjexxFCL::TypeTraits< float > , ObjexxFCL::TypeTraits< int > , ObjexxFCL::TypeTraits< long double > , ObjexxFCL::TypeTraits< long int > , ObjexxFCL::TypeTraits< short int > , ObjexxFCL::TypeTraits< unsigned int > , ObjexxFCL::TypeTraits< unsigned long int > , ObjexxFCL::TypeTraits< unsigned short int >
• precision_adapter() : detail::precision_adapter< SpecHandler, Char >
• precision_checker() : detail::precision_checker< ErrorHandler >
• precompute_intra() : TCDock
• predicate_cmp_filename() : utility::predicate_cmp_filename
• predict() : utility::libsvm::Svm_rosetta
• predict_probability() : utility::libsvm::Svm_rosetta
• predicted_distance() : DistancePrediction
• prefix() : utility::options::OptionCollection
• prefix_code() : binder::Binder , binder::ClassBinder
• prefix_for_static_member_functions() : binder::Config
• prepack_pose() : PhProtocol
• prepare_for_output() : utility::tag::XMLSchemaAttribute , utility::tag::XMLSchemaComplexType , utility::tag::XMLSchemaElement , utility::tag::XMLSchemaModelGroup , utility::tag::XMLSchemaRestriction , utility::tag::XMLSchemaTopLevelElement
• prepare_for_query() : numeric::coordinate_fitting::CoordinateArray_RMSD_FlatLookup< Real > , numeric::coordinate_fitting::FlatLookup< QueryType, EntryType, Real >
• prepare_rotamer_sets() : InteractionGraphPerformanceBenchmark
• prepare_scoring_function() : DockGlycansProtocol
• prepare_sequence_of_subelement_sets() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_choice_opt() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_choice_req() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_repeatable() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_single_instance_optional() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_single_instance_required() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_single_instance_required_ordered() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepend_Aform_residue() : dsRNA_grow
• prepend_channel_name() : basic::TracerImpl
• prepend_to_msg() : utility::excn::Exception
• pretty() : numeric::expression_parser::ASTPrinter
• pretty_print() : CalcsTestMover
• prev() : utility::list_element< T >
• preview_file() : ui::task::TaskView
• previous() : utility::graph::DirectedEdgeListElement , utility::graph::EdgeListElement
• primary_authors() : basic::citation_manager::Citation
• PrimaryKey() : basic::database::schema_generator::PrimaryKey
• print() : basic::database::schema_generator::Column , basic::database::schema_generator::Constraint , basic::database::schema_generator::DbBigInt , basic::database::schema_generator::DbDataType , basic::database::schema_generator::DbDouble , basic::database::schema_generator::DbInteger , basic::database::schema_generator::DbReal , basic::database::schema_generator::DbText , basic::database::schema_generator::DbTextKey , basic::database::schema_generator::DbUUID , basic::database::schema_generator::ForeignKey , basic::database::schema_generator::GreaterThanConstraint , basic::database::schema_generator::Index , basic::database::schema_generator::PrimaryKey , basic::database::schema_generator::Schema , basic::database::schema_generator::UniqueConstraint , basic::MetricValue< T >
• Print() : basic::sampling::orientations::Quaternion
• print() : basic::sampling::orientations::QuaternionGrid
• Print() : basic::sampling::orientations::QuatSet
• print() : buffered_file , enumerate_junctions.Design , enumerate_junctions.DHR , enumerate_junctions.Junction , numeric::expression_parser::TokenSet , PairScore , SequenceCoords , utility::graph::DirectedNode , utility::graph::LowMemNode , utility::graph::Node
• print_aa_statistics() : MPInterfaceStatistics
• print_energy() : PepMinMover
• print_error_message() : utility::options::Option
• print_features() : Features , JDmover
• print_flips() : ElecDensMinPackMinReporter
• print_hbonds() : PhDocking , PhProtocol
• print_header() : utility::io::mpi_stream::basic_mpi_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT > , utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
• print_roc_curve() : numeric::RocCurve
• print_score() : MPDomainAssembly
• print_seqs() : PrintSequenceMover
• print_sequences() : DesignGlycansProtocol
• print_sheets() : ExposedStrandMover
• print_sheets_extras() : ExposedStrandMover
• print_stats() : ConstraintStatsMover , SpartaSuperDeviationMover , SuperDeviationMover
• print_to_curr_pos() : numeric::expression_parser::TokenSet
• print_unprocessed_incoming_messages() : utility::SimulateMPI
• print_unprocessed_outgoing_messages() : utility::SimulateMPI
• print_vertices() : utility::graph::Digraph , utility::graph::Graph , utility::graph::LowMemGraph< _LMNode, _LMEdge >
• PrintEuler() : basic::sampling::orientations::Quaternion
• printf_arg_formatter() : printf_arg_formatter< OutputIt, Char >
• printf_formatter() : printf_formatter< T >
• printf_width_handler() : detail::printf_width_handler< Char >
• PrintFeatures() : PrintFeatures
• printHeader() : PairScore
• PrintPDDF() : PrintPDDF
• PrintSequenceMover() : PrintSequenceMover
• priority() : basic::TracerImpl
• private_index() : utility::keys::AutoKey< O, S, C > , utility::keys::Key , utility::keys::UserKey< O, S, C > , utility::keys::VariantKey< K >
• probability() : DisulfideBondEnergy
• process_decoy() : protocols::abinitio::JumpSpecificAbrelax
• process_fragfile() : DockFragmentsMover
• process_packet() : PyMOL-Rosetta-relay-client.PR_PyMOLServer , PyMOL-RosettaServer.PR_PyMOLServer , pyrosetta.PyMOLRosettaServer.PR_PyMOLServer
• processed() : utility::SimulateMPIMessage
• ProfileThis() : basic::ProfileThis
• progress() : ui::task::Functor , ui::task::FunctorASyncSequence , ui::task::FunctorSequence
• progress_data_received() : ui::network::Bowman , ui::network::BowmanThread , ui::widgets::PoseEditor
• Project() : ui::task::Project
• project() : ui::task::ProjectModel , ui::task::Task
• project_along_axis() : CrystFFTDock
• project_normal() : numeric::xyzTriple< T > , numeric::xyzVector< T >
• project_parallel() : numeric::xyzTriple< T > , numeric::xyzVector< T >
• projected_normal() : numeric::xyzTriple< T > , numeric::xyzVector< T >
• projected_parallel() : numeric::xyzTriple< T > , numeric::xyzVector< T >
• ProjectModel() : ui::task::ProjectModel
• ProjectView() : ui::task::ProjectView
• protein() : schema.Job
• Protocol_MolecularDynamics() : Protocol_MolecularDynamics
• provide_xml_schema() : basic::resource_manager::locator::DatabaseResourceLocator , basic::resource_manager::locator::DatabaseResourceLocatorCreator , basic::resource_manager::locator::FileListResourceLocator , basic::resource_manager::locator::FileListResourceLocatorCreator , basic::resource_manager::locator::FileSystemResourceLocator , basic::resource_manager::locator::FileSystemResourceLocatorCreator , basic::resource_manager::locator::NullResourceLocator , basic::resource_manager::locator::NullResourceLocatorCreator , basic::resource_manager::ResourceLoaderCreator , basic::resource_manager::ResourceLocatorCreator
• Proxy() : ObjexxFCL::CArrayP< T >
• proxy() : ObjexxFCL::CArrayP< T > , ObjexxFCL::FArray< T >
• ProxySentinel() : ObjexxFCL::internal::ProxySentinel
• pseudoCA() : pseudoCA
• pseudoCAbond() : pseudoCAbond
• PseudoCAMultifunc() : PseudoCAMultifunc
• pseudoTrace() : pseudoTrace
• pseudoTraceRecords() : pseudoTraceRecords
• psi() : Mode , numeric::EulerAngles< T >
• psi_degrees() : numeric::EulerAngles< T >
• psi_radians() : numeric::EulerAngles< T >
• ptr_registry() : utility::factory::Factory< P >
• ptr_registry_transfer() : utility::factory::Factory< P >
• public_pick_fragments() : VarLengthBuildKristin
• public_release() : utility::Version
• pure_test_p() : test.T850_SubClassing.PyOverloadTest , utility::py::OverloadTest
• pure_test_ref() : test.T850_SubClassing.PyOverloadTest , utility::py::OverloadTest
• purge_address() : pyrosetta.distributed.cluster.logging_handlers.MultiSocketHandler
• purge_all() : pyrosetta.distributed.cluster.logging_handlers.MultiSocketHandler
• push() : detail::dynamic_arg_list , job_manager.StatusWindow , ObjexxFCL::internal::ObserverGraph
• push_back() : detail::buffer< T > , dynamic_format_arg_store< Context > , numeric::IntervalSet< T > , ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< T > , ui::util::TreeNodeModel< T >::Node , utility::graph::DirectedEdgeList , utility::graph::EdgeList , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyVector< K, T > , utility::options::VectorOption_T_< K, T >
• push_front() : utility::graph::DirectedEdgeList , utility::graph::EdgeList
• push_node() : utility::tag::XMLErrorHandler
• push_status() : job_manager.AppWindow
• push_to_front_of_history_queue() : utility::recent_history_queue
• put() : utility::io::mpi_stream::basic_mpi_ostream< Elem, Tr, ElemA, ByteT, ByteAT > , utility::io::ocstream , utility::io::orstream , utility::io::ozstream , zlib_stream::basic_zip_ostream< Elem, Tr, ElemA, ByteT, ByteAT >
• put_back_from_zip_stream() : zlib_stream::basic_unzip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
• put_coordinate_constraints() : myspace::Scheduler
• put_long_as_uint32() : utility::io::mpi_stream::basic_mpi_ostream< Elem, Tr, ElemA, ByteT, ByteAT > , zlib_stream::basic_zip_ostream< Elem, Tr, ElemA, ByteT, ByteAT >
• putback() : utility::io::icstream , utility::io::irstream , utility::io::izstream
• px() : numeric::HomogeneousTransform< T > , numeric::xyzTransform< T >
• py() : numeric::HomogeneousTransform< T > , numeric::xyzTransform< T >
• pybind11_include_file() : binder::Config
• pythag() : basic::svd::SVD_Solver
• pz() : numeric::HomogeneousTransform< T > , numeric::xyzTransform< T >