- r -

• R() : numeric::BodyPosition< T >
• R_refresh() : numeric::BodyPosition< T >
• rad2deg() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• radial_bin_index() : numeric::geometry::hashing::SixDCoordinateBinner
• radians_to_degrees() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• radius() : numeric::geometry::hashing::Ball , numeric::geometry::hashing::xyzStripeHash::const_iterator , numeric::sphericalVector< T >
• raise() : ui::util::BadFileFormatException
• rama_apply() : BreadthMover
• rama_perturb() : ClosureMover
• RamaTestMover() : RamaTestMover
• ramp_score_weight() : DockGlycansProtocol
• random_close_phipsi_from_rama() : Bola
• random_device_name() : basic::random::RandomGeneratorSettings
• random_element() : numeric::random::RandomGenerator
• random_move() : Bola
• random_nonclashing_move() : Bola
• random_point() : numeric::IntervalSet< T >
• random_range() : numeric::random::RandomGenerator
• random_range2() : numeric::random::RandomGenerator
• random_sample() : numeric::random::WeightedSampler
• RandomGenerator() : numeric::random::RandomGenerator
• RandomGeneratorSettings() : basic::random::RandomGeneratorSettings
• randomize() : CCParam
• range() : numeric::MultiDimensionalHistogram , utility::fixedsizearray0< T, S > , utility::fixedsizearray1< T, S >
• ranges() : numeric::DiscreteIntervalEncodingTree< T >
• raw_default_string() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• raw_msg() : utility::excn::Exception
• raw_value_string() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• rbegin() : utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T >
• rdbuf() : utility::io::icstream , utility::io::irstream , utility::io::izstream , utility::io::mpi_stream::basic_mpi_ostream< Elem, Tr, ElemA, ByteT, ByteAT > , utility::io::mpi_stream::basic_mpi_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT > , utility::io::ocstream , utility::io::orstream , utility::io::ozstream , zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT > , zlib_stream::basic_zip_istreambase< Elem, Tr, ElemA, ByteT, ByteAT > , zlib_stream::basic_zip_ostream< Elem, Tr, ElemA, ByteT, ByteAT > , zlib_stream::basic_zip_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT >
• RDCScoreMover() : RDCScoreMover
• RDCToolMover() : RDCToolMover
• RDF_Mover() : RDF_Mover
• read() : binder::Config , utility::io::icstream , utility::io::irstream , utility::io::izstream , utility::io::TarParser , utility::tag::Tag
• read_batch() : CloudArchiveManagerWrapper
• read_cmdline_erraser() : erraser_option.erraser_option
• read_cmdline_erraser_single_res() : erraser_option.erraser_option
• read_cmdline_full() : erraser_option.erraser_option
• read_command_line_options() : protocols::antibody::design::AntibodyDesignMoverGenerator
• read_data() : AbsFunc , CoupledFunc , numeric::kdtree::KDPoint , RepFunc
• read_data_file() : DisulfEposDatabase
• read_datafile() : CapriTotalEnergy
• read_footer() : zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT >
• read_from_db() : numeric::interpolation::Histogram< X, Y >
• read_in_insert_loop_info() : APDBCMover
• read_lines() : VallReader
• read_next() : utility::json_spirit::Stream_reader< Istream_type, Value_type > , utility::json_spirit::Stream_reader_thrower< Istream_type, Value_type >
• read_resource_locators_tags() : basic::resource_manager::ResourceManager
• read_resources_from_xml() : basic::resource_manager::ResourceManager
• read_resources_tags() : basic::resource_manager::ResourceManager
• read_sphere_data() : SphereSample
• read_template_structures() : apps::pilot::SampleSecondaryStructureAlignmentMover
• read_uint32() : zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT >
• ReadBody() : GetURLHandler
• readsome() : utility::io::icstream , utility::io::irstream , utility::io::izstream
• readSSE() : PickSSE
• real() : pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor , pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor
• real_eigenvalues() : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• real_eigenvectors() : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• realign() : ChallengeMover
• RealOption() : utility::options::RealOption
• RealOptionKey() : utility::options::RealOptionKey
• RealVectorOption() : utility::options::RealVectorOption
• RealVectorOptionKey() : utility::options::RealVectorOptionKey
• rebuild_pose_from_scratch() : MainWindow
• rebuildAndDetectDisulfideBond() : DisulfideBondEnergy
• receive() : basic::mpi::DbMoverMessageListener , basic::mpi::MessageListener
• receive_char_from_node() : utility::SimulateMPI
• receive_double_from_node() : utility::SimulateMPI
• receive_doubles_from_node() : utility::SimulateMPI
• receive_integer_from_anyone() : utility::SimulateMPI
• receive_integer_from_node() : utility::SimulateMPI
• receive_integers_from_node() : utility::SimulateMPI
• receive_linkunits_from() : utility::signals::SignalHub< ReturnType, Signal >
• receive_size_from_node() : utility::SimulateMPI
• receive_sizes_from_node() : utility::SimulateMPI
• receive_string_from_node() : utility::SimulateMPI
• receive_tokens_from() : utility::signals::TokenHub< ReturnType, Signal >
• recent_history_queue() : utility::recent_history_queue
• recenter_pose_at_origin() : SimulateCryoMover
• recenter_to_img_coordinates() : SimulateCryoMover
• reconstruct_gradient() : Solver
• record() : numeric::MultiDimensionalHistogram
• record_annealer_trajectory() : core::pack::annealer::FixbbSimAnnealer
• record_pose_metrics() : DockGlycansProtocol
• recover_low() : myMC
• recursively_model_rotamer_chis() : zinc_stats::ZincStatisticGenerator
• recursively_write_ct_to_schema() : utility::tag::XMLSchemaRepeatableCTNode
• redesign_20() : InteractionGraphPerformanceBenchmark
• redimension() : ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T >
• reduce_expression() : ObjexxFCL::Dimension
• reducible() : ObjexxFCL::Dimension , ObjexxFCL::DimensionExpression , ObjexxFCL::DimensionExpressionCon , ObjexxFCL::DimensionExpressionCube , ObjexxFCL::DimensionExpressionDiv , ObjexxFCL::DimensionExpressionMax , ObjexxFCL::DimensionExpressionMin , ObjexxFCL::DimensionExpressionMul , ObjexxFCL::DimensionExpressionPow , ObjexxFCL::DimensionExpressionRef , ObjexxFCL::DimensionExpressionSquare , ObjexxFCL::DimensionExpressionSub , ObjexxFCL::DimensionExpressionSum
• ref() : ObjexxFCL::Fsubstring
• reference() : ObjexxFCL::Dimension , ObjexxFCL::DimensionExpression , ObjexxFCL::DimensionExpressionCon , ObjexxFCL::DimensionExpressionCube , ObjexxFCL::DimensionExpressionDiv , ObjexxFCL::DimensionExpressionMax , ObjexxFCL::DimensionExpressionMin , ObjexxFCL::DimensionExpressionMul , ObjexxFCL::DimensionExpressionPow , ObjexxFCL::DimensionExpressionRef , ObjexxFCL::DimensionExpressionSquare , ObjexxFCL::DimensionExpressionSub , ObjexxFCL::DimensionExpressionSum
• reference_copy() : ObjexxFCL::Dimension
• reference_job() : InterfaceDDGBindInnerJob
• reference_name() : utility::tag::XMLSchemaElement
• refold() : Bola
• refresh() : job_manager.DatabaseWindow , job_manager.JobWindow , job_manager.StatusWindow
• refuse_unexpected_files() : utility::io::FileContentsMap
• register_calculators() : CalcsTestMover , HDdesignMover
• register_options() : DesignGlycansProtocol , DockGlycansProtocol , GlycomutagenesisProtocol , MPDomainAssembly , MPInterfaceStatistics , NativeEnsemble , protocols::abinitio::Application , protocols::abinitio::ApplicationContext , protocols::abinitio::CustomAbinitio , protocols::abinitio::JumpSpecificAbrelax , SampleTiltProtocol , TestQuickRelaxMover , ThisApplication
• Registrant() : utility::factory::Registrant< P >
• registry() : utility::factory::Factory< P >
• reinit() : pyrosetta.distributed.viewer.core.Viewer
• reinitialize_for_each_job() : abbinding , AnchorFinderMover , CalcCdrRms , CalcIrms , ExtractATD , FloppyTailMover , GlycanClashCheckMover , HECTMover , HemaggTrimer , IAMover , JDmover , JDtestmover , MotifDock , mtransferase , PackingAngle , PhDocking , PhProtocol , StatefulMover , UBQ_E2Mover , UBQ_GTPase_disulfide_Mover
• reinitialize_for_new_input() : abbinding , AnchorFinderMover , CalcCdrRms , CalcIrms , ExtractATD , FloppyTailMover , HECTMover , HemaggTrimer , IAMover , JDmover , JDtestmover , MotifDock , mtransferase , PackingAngle , PhDocking , PhProtocol , StatefulMover , UBQ_E2Mover , UBQ_GTPase_disulfide_Mover
• relative() : utility::file::FileName , utility::file::PathName
• relax() : protocols::abinitio::JumpSpecificAbrelax
• relax_pose() : PhProtocol
• relax_pose_around_hbond() : apps::pilot::momeara::HBondConformation
• RelaxCDRsMover() : RelaxCDRsMover
• RelaxJobQueen() : RelaxJobQueen
• release_buffer() : utility::signals::BufferedSignalHub< ReturnType, Signal >
• release_file() : utility::io::mpi_stream::basic_mpi_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT >
• release_threads() : basic::thread_manager::RosettaThreadManager
• remainder() : numeric::RemainderSelector< T, bool > , numeric::RemainderSelector< T, true > , ObjexxFCL::RemainderSelector< T, bool > , ObjexxFCL::RemainderSelector< T, true >
• remap_resid() : SameResidueTypeConstraint
• remove() : utility::factory::Factory< P >
• Remove() : utility::graph::RingDetection< Graph >
• remove() : utility::in_place_list< T > , utility::keys::KeyLookup< K >
• remove_as_observer() : ObjexxFCL::Dimension , ObjexxFCL::DynamicIndexRange , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray2D< T >
• remove_back() : utility::vectorL< L, T, A >
• remove_input_file() : utility::Inline_File_Provider
• remove_invalid() : utility::signals::SignalHub< ReturnType, Signal >
• remove_leading_zeros() : detail::bigint
• remove_observer() : ObjexxFCL::DimensionExpression , ObjexxFCL::DimensionExpressionCon , ObjexxFCL::DimensionExpressionCube , ObjexxFCL::DimensionExpressionDiv , ObjexxFCL::DimensionExpressionMax , ObjexxFCL::DimensionExpressionMin , ObjexxFCL::DimensionExpressionMul , ObjexxFCL::DimensionExpressionPow , ObjexxFCL::DimensionExpressionRef , ObjexxFCL::DimensionExpressionSquare , ObjexxFCL::DimensionExpressionSub , ObjexxFCL::DimensionExpressionSum , ObjexxFCL::Observer , ObjexxFCL::ObserverMulti , ObjexxFCL::ObserverSingle
• remove_prefix() : basic_string_view< Char >
• remove_redundant() : numeric::UniformRotationSampler
• RemoveObject() : numeric::VoxelGrid< T >
• RemoveObjects() : numeric::VoxelGrid< T >
• rename_file() : ui::task::FileTableModel
• rename_input_file() : ui::task::Task
• rename_job() : ui::task::Task
• rend() : utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T >
• rep() : GridWeights
• repack() : A3BHbsCreatorMover , HbondZinc , HbondZincBackbone
• RepFunc() : RepFunc
• replace_col() : numeric::MathMatrix< T >
• replace_layer() : numeric::MathNTensor< T, N > , numeric::MathTensor< T >
• replace_ligand() : HemeReplace
• replace_row() : numeric::MathMatrix< T >
• replace_scattach_res() : PoseWrap
• Report() : basic::gpu::Timer , basic::Report
• report_by_aa() : myspace::DataClass
• report_data() : GlycanClashCheckMover
• report_features() : MyFeaturesReporter
• report_no_date() : detail::chrono_format_checker
• report_results() : FragMonteCarlo
• report_sasa_if_contacting_water() : xtal_water_bunsat
• report_score() : FragMonteCarlo
• Reporter() : basic::Reporter
• ReportResult() : GetURLHandler
• ReportResultAndDie() : GetURLHandler
• representative_atom_name() : EnvToolMover
• request() : basic::mpi::DbMoverMessageListener , basic::mpi::MessageListener
• request_bindings() : binder::Binder , binder::Context
• request_bindings_and_skipping() : binder::Binder , binder::ClassBinder , binder::EnumBinder , binder::FunctionBinder
• request_by_name() : basic::sampling::orientations::QuaternionGridManager
• request_by_radius() : basic::sampling::orientations::QuaternionGridManager
• request_by_size() : basic::sampling::orientations::QuaternionGridManager
• request_file() : nacl_rosetta::RosettaURLFileHandler , utility::Inline_File_Provider_Hook
• request_file_transfer() : nacl_rosetta::RosettaInstance
• request_job_from_server() : RosettaJob
• request_skipping() : binder::Binder
• RequestFile_from_main_thread() : nacl_rosetta::RosettaInstance
• require_explicit_deallocation_for_resource() : basic::resource_manager::ResourceManager
• require_numeric_argument() : detail::numeric_specs_checker< ErrorHandler >
• required_attribute() : utility::tag::XMLSchemaAttribute
• requires_compression() : pyrosetta.distributed.cluster.serialization.Serialization
• RerootEdgeSorter() : RerootEdgeSorter
• RerootRestypeVisitor() : RerootRestypeVisitor
• resample_maps_and_get_self() : CrystFFTDock
• RescoreCenrot() : RescoreCenrot
• RescorePDDF() : RescorePDDF
• RescoreSAXS() : RescoreSAXS
• reserve() : basic_memory_buffer< T, SIZE, Allocator > , detail::arg_formatter_base< OutputIt, Char, ErrorHandler > , dynamic_format_arg_store< Context > , ObjexxFCL::Chunk< T > , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T >
• reserve_child() : SphereNode
• reserve_destination_size() : utility::subset_mapping
• reserve_edge_space() : utility::graph::UEVertex< V, E >
• reserve_threads() : basic::thread_manager::RosettaThreadManager
• reserved_scores_protocol() : pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest
• ReservoirSampler() : numeric::random::ReservoirSampler< T >
• Reset() : basic::gpu::Timer
• reset() : numeric::geometry::BoundingBox< T > , numeric::random::WeightedReservoirSampler< T > , pyrosetta.distributed.viewer.core.Viewer
• reset_accessed_options() : utility::tag::Tag
• reset_all_flags() : numeric::ClusteringTreeNode
• reset_controls_dependent_on_other_helix() : ui::ui_protocols::helical_bundle::HelicalBundleDialogueWidget
• reset_counts() : numeric::MultiDimensionalHistogram
• reset_coval() : utility::heap
• reset_csts() : ConstraintConfig
• reset_hub() : HubDenovo
• reset_nonparametric_rotation_xform() : ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget
• reset_nonparametric_translation_vect() : ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget
• reset_state() : utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT > , zlib_stream::basic_zip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
• reset_zip_stream() : zlib_stream::basic_zip_ostream< Elem, Tr, ElemA, ByteT, ByteAT >
• reshape() : ObjexxFCL::ChunkVector< T >
• resi() : numeric::geometry::hashing::Ball , numeric::geometry::hashing::xyzStripeHash
• resi_to_primary() : ConstraintConfig
• residue_energy() : MyCI1B , test.T850_SubClassing.MyNewCI1B , test.T860_SubClassing_EnergyMethods.MyCI1B_Method , test.T870_SubClassing_EnergyMethods2.CI1B_Method , test.Workshop9_my_shapes.LengthScoreMethod
• residue_index_description() : InterfaceDDGBindInnerJob
• residue_names_from_sequence() : ConstraintConfig
• residue_pair_energy() : CapriTwoBodyEnergy , test.T870_SubClassing_EnergyMethods2.CD2B_Method , test.T870_SubClassing_EnergyMethods2.CI2B_Method , test.Workshop9_my_shapes.CI2BScoreMethod
• residue_scores() : RosettaHolesMover
• ResidueChainVectorOption() : utility::options::ResidueChainVectorOption
• ResidueChainVectorOptionKey() : utility::options::ResidueChainVectorOptionKey
• resize() : basic::datacache::DataCache< Data > , basic_memory_buffer< T, SIZE, Allocator > , numeric::fourier::kiss_dct_state , numeric::fourier::kiss_fft_state , numeric::fourier::kiss_fftnd_state , numeric::fourier::kiss_fftndr_state , numeric::fourier::kiss_fftr_state , numeric::fourier::kiss_fftsplit_state , numeric::random::WeightedSampler , numeric::VoxelArray< _Float, _Value > , ObjexxFCL::CArray< T > , ObjexxFCL::CArrayP< T > , ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< T > , ObjexxFCL::FArray< T > , utility::in_place_list< T > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyVector< K, T >
• resize_counts() : numeric::MultiDimensionalHistogram
• resizeEvent() : MainWindow
• resizeGL() : MainWindow , ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• resnum_and_chain() : utility::options::ResidueChainVectorOption
• resolve_name() : pointGroupHit
• ResourceLoaderFactory() : basic::resource_manager::ResourceLoaderFactory
• ResourceLoaderRegistrator() : basic::resource_manager::ResourceLoaderRegistrator< T >
• ResourceLocator() : basic::resource_manager::ResourceLocator
• ResourceLocatorFactory() : basic::resource_manager::ResourceLocatorFactory
• ResourceLocatorRegistrator() : basic::resource_manager::ResourceLocatorRegistrator< T >
• ResourceManager() : basic::resource_manager::ResourceManager
• ResourceManagerFactory() : basic::resource_manager::ResourceManagerFactory
• ResourceManagerRegistrator() : basic::resource_manager::ResourceManagerRegistrator< T >
• resources_begin() : basic::datacache::DataMap
• resources_end() : basic::datacache::DataMap
• resources_that_have_been_declared() : basic::resource_manager::ResourceManager
• ResRotPair() : basic::datacache::ResRotPair
• rest_and_clause_token() : numeric::expression_parser::ArithmeticASTRestAndClause
• rest_expression_token() : numeric::expression_parser::ArithmeticASTRestExpression
• rest_or_clause_token() : numeric::expression_parser::ArithmeticASTRestOrClause
• rest_term_token() : numeric::expression_parser::ArithmeticASTRestTerm
• restore_archive() : CloudArchiveManagerWrapper
• restore_batchlist() : CloudArchiveManagerWrapper
• restoreState() : numeric::random::mt19937_RG , numeric::random::RandomGenerator , numeric::random::standard_RG , numeric::random::uniform_RG
• restrict_access() : utility::options::Option
• result() : ui::task::FunctorNetworkCall , ui::task::NetworkCall
• result_as_json() : ui::task::FunctorNetworkCall , ui::task::NetworkCall
• result_received() : ui::network::Bowman , ui::network::BowmanThread , ui::widgets::PoseEditor
• Results_Keeper() : Results_Keeper
• resume() : ui::task::TaskSyncer_TaskStrategy
• retrieve_next_message() : utility::SimulateMPIData
• return_file_callback() : nacl_rosetta::RosettaURLFileHandler , utility::Inline_File_Provider_Hook
• return_raw_scores() : abbinding
• return_results_to_server() : RosettaJob
• revert_loops_to_original() : apps::pilot::SampleSecondaryStructureAlignmentMover
• revert_muations() : PerturbStruct
• revision() : utility::Version
• rgb() : rgb
• right() : numeric::ClusteringTreeNode
• right_child() : numeric::kdtree::KDNode
• right_justified() : ObjexxFCL::Cstring , ObjexxFCL::Fstring
• right_justify() : ObjexxFCL::Cstring , ObjexxFCL::Fstring
• right_multiply_by() : numeric::Quaternion< T > , numeric::xyzMatrix< T > , ObjexxFCL::FArray2< T >
• right_multiply_by_inverse_of() : numeric::Quaternion< T >
• right_multiply_by_transpose() : numeric::xyzMatrix< T > , ObjexxFCL::FArray2< T >
• right_transform_by() : numeric::BodyPosition< T >
• right_transform_by_inverse_of() : numeric::BodyPosition< T >
• rigid_body_minimization() : MinPackMin
• RingDetection() : utility::graph::RingDetection< Graph >
• RingEdgeAnnotationVisitor() : utility::graph::RingEdgeAnnotationVisitor< Graph, EdgeMap, PathMap >
• RingSizeVisitor() : utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >
• rms() : DisulfEpos , DisulfEposDatabase
• RMS_ScoringScheme() : RMS_ScoringScheme
• rms_to_native() : Protocol_MolecularDynamics
• rms_to_orig_subsubs() : PoseWrap
• RMSByResStatistics() : RMSByResStatistics
• rmsd_frmk_chothia_num_ab() : abbinding
• RmsData() : numeric::model_quality::RmsData
• RNA_ScoreMover() : RNA_ScoreMover
• rng_type() : basic::random::RandomGeneratorSettings
• roc_curve() : numeric::RocCurve
• RocCurve() : numeric::RocCurve
• RocPoint() : numeric::RocPoint
• roll() : myMC
• rollmove_to_inverse_C2_symmetry() : zinc2_homodimer_setup
• root() : numeric::kdtree::KDTree , ui::task::ProjectModel
• root1() : numeric::Polynomial_1d
• root2() : numeric::Polynomial_1d
• RosettaBackend() : RosettaBackend
• RosettaHolesMover() : RosettaHolesMover
• RosettaInstance() : nacl_rosetta::RosettaInstance
• RosettaJob() : RosettaJob
• RosettaModule() : nacl_rosetta::RosettaModule
• RosettaTensorflowManager() : basic::tensorflow_manager::RosettaTensorflowManager
• RosettaTensorflowProtocolBase() : basic::tensorflow_manager::RosettaTensorflowProtocolBase
• RosettaThread() : nacl_rosetta::RosettaInstance
• RosettaThreadAllocation() : basic::thread_manager::RosettaThreadAllocation
• RosettaThreadAssignmentInfo() : basic::thread_manager::RosettaThreadAssignmentInfo
• RosettaThreadManager() : basic::thread_manager::RosettaThreadManager
• RosettaThreadManagerAdvancedAPIKey() : basic::thread_manager::RosettaThreadManagerAdvancedAPIKey
• RosettaThreadManagerInitializationTracker() : basic::thread_manager::RosettaThreadManagerInitializationTracker
• RosettaURLFileHandler() : nacl_rosetta::RosettaURLFileHandler
• rot() : numeric::xyzTransform< T >
• rot_deg() : numeric::xyzTransform< T >
• rotate() : Link
• RotateSAXS() : RotateSAXS
• rotation() : numeric::linear_algebra::EllipseParameters
• rotation_angle() : numeric::xyzTransform< T >
• rotation_angle_degrees() : numeric::xyzTransform< T >
• rotation_axis() : numeric::xyzTransform< T >
• rotation_cosine() : numeric::xyzTransform< T >
• rotation_matrix() : basic::sampling::orientations::Quaternion , numeric::HomogeneousTransform< T >
• rotation_sine() : numeric::xyzTransform< T >
• RotSel() : RotSel
• rotx() : ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• roty() : ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• rotz() : ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• roundtrip() : pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed
• row() : numeric::xyzMatrix< T >
• row_x() : numeric::xyzMatrix< T >
• row_y() : numeric::xyzMatrix< T >
• row_z() : numeric::xyzMatrix< T >
• rowCount() : ui::network::BowmanModel , ui::task::FileTableModel , ui::task::ProjectModel , ui::task::ProjectTasksModel , ui::util::TreeNodeModel< T >
• RowData() : basic::database::insert_statement_generator::RowData< T >
• RowDataBase() : basic::database::insert_statement_generator::RowDataBase
• RowPointers() : numeric::RowPointers< T >
• rows() : numeric::xyzMatrix< T >
• rows_constructor() : numeric::xyzMatrix< T >
• RowsPointer() : numeric::RowsPointer< T >
• RowVectors() : numeric::RowVectors< T >
• rstrip() : ObjexxFCL::Fstring
• rstrip_whitespace() : ObjexxFCL::Fstring
• rstripped() : ObjexxFCL::Fstring
• rstripped_whitespace() : ObjexxFCL::Fstring
• rt6() : numeric::xyzTransform< T >
• RTminOptMultifunc() : RTminOptMultifunc
• run() : ConsensusFragmentMover , core::pack::annealer::FixbbSimAnnealer , DesignBenchmark , DockFragmentsMover , DockingBenchmark< dock, TScale > , DomainAssemblerNDocker , FastRelaxPerformanceBenchmark , FragmentAssemblyMover , FragMonteCarlo , HubDenovo , InstantiateModulesBenchmark , InteractionGraphPerformanceBenchmark , job_manager.CommandLauncher , job_manager.CommandRunner , job_manager.DeleteJob , job_manager.SaveMovie , LigandDockBenchmark , MinimizerBenchmark< sft, TScale > , MPI_LoopHash_Launcher , MPI_Refinement_Launcher , OptionCollectionBenchmark , PDB_IOBenchmark , PerformanceBenchmark , protocols::abinitio::Application , protocols::abinitio::CustomAbinitio , protocols::abinitio::JumpSpecificAbrelax , pyrosetta.tests.distributed.test_gil.HeartBeat , RosettaBackend , ScoreBenchmark , ScoreEachBenchmark , ScoreFragmentSetMover , ShearMoverBenchmark , SmallMoverBenchmark , SolutionRescoreMover , TCDock , ThisApplication , TryScoreFilter , ui::network::B , ui::network::BowmanThread , ui::task::Functor , ui::task::FunctorASyncSequence , ui::task::FunctorNetworkCall , ui::task::FunctorSequence , ui::task::TaskCancelDialog , XMLParseBenchmark
• run_and_return_to_server() : RosettaJob
• run_combine() : myspace::Scheduler
• run_decomp_svd() : basic::svd::SVD_Solver
• run_example_hbond_sweep() : apps::pilot::momeara::HBondConformation
• run_function_in_threads() : basic::thread_manager::RosettaThreadManager
• run_LH() : myspace::Scheduler
• run_LHeval() : myspace::Scheduler
• run_long_ranged_two_body_energy() : ScoreEachBenchmark
• run_md() : myspace::Scheduler
• run_NM() : myspace::Scheduler
• run_NM_evalmodes() : myspace::Scheduler
• run_one_body_energy() : ScoreEachBenchmark
• run_score_hotspot() : run_score_hotspot
• run_score_patchdock_hotspot() : run_score_patchdock_hotspot
• run_score_svd_on_matrix() : basic::svd::SVD_Solver
• run_score_svd_without_solving() : basic::svd::SVD_Solver
• run_short_ranged_two_body_energy() : ScoreEachBenchmark
• run_solve_svd() : basic::svd::SVD_Solver