- t -

• t() : numeric::BodyPosition< T >
• t_flush() : basic::basic_otstream< CharT, Traits > , basic::ComparingTracer , basic::MemTracerImpl , basic::PyTracer , basic::TracerImpl , basic::TracerImpl::TracerProxyImpl , basic::TracerToFile
• t_str() : ObjexxFCL::Fstring
• tab_prefixed() : utility::options::OptionCollection
• table_init_statements() : basic::database::schema_generator::Schema
• table_schema_statements() : basic::database::schema_generator::Schema
• tabulate() : DisulfideBondEnergy
• tabulate_individual_data() : GlycanClashCheckMover
• tag() : numeric::RocPoint , PoseWrap
• Tag() : utility::tag::Tag
• tags() : pyrosetta.io.silent_file_map.SilentFileMap
• Tags() : Tags
• tail() : ObjexxFCL::Fstring , utility::in_place_list< T >
• TarParser() : utility::io::TarParser
• task() : ui::task::Project , ui::task::ProjectModel
• Task() : ui::task::Task
• task_constraint_setup() : HDdesignMover
• task_data() : ui::task::Task
• task_data_upload() : ui::task::TaskSyncer_TaskStrategy
• task_factory() : HemeBindingMover
• task_files_upload() : ui::task::TaskSyncer_TaskStrategy
• task_id() : ui::task::Task
• task_queuing() : ui::task::TaskSyncer_TaskStrategy
• TaskCancelDialog() : ui::task::TaskCancelDialog
• tasks() : ui::task::Project
• tasks_changed() : ui::task::Project
• TaskSubmit() : ui::task::TaskSubmit
• TaskSyncer_NodeStrategy() : ui::task::TaskSyncer_NodeStrategy
• TaskSyncer_TaskStrategy() : ui::task::TaskSyncer_TaskStrategy
• TaskView() : ui::task::TaskView
• TCDock() : TCDock
• tear_down_logger() : pyrosetta.tests.distributed.cluster.test_smoke.RuntimeTest
• tearDown() : DesignBenchmark , DockingBenchmark< dock, TScale > , FastRelaxPerformanceBenchmark , InstantiateModulesBenchmark , InteractionGraphPerformanceBenchmark , InterfaceFeaturesTests , LigandDockBenchmark , MinimizerBenchmark< sft, TScale > , OptionCollectionBenchmark , PDB_IOBenchmark , PerformanceBenchmark
• teardown() : pyrosetta.distributed.cluster.worker_plugins.SocketLoggerPlugin
• tearDown() : pyrosetta.tests.distributed.cluster.test_smoke.TestBase , pyrosetta.tests.distributed.test_dask.TestDaskDistribution , pyrosetta.tests.distributed.test_viewer.TestViewer , ScoreBenchmark , ScoreEachBenchmark , ShearMoverBenchmark , SmallMoverBenchmark , XMLParseBenchmark
• tearDownClass() : pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor , pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest , pyrosetta.tests.distributed.cluster.test_smoke.TestBase , test.T010_LoadPDB.LoadPDBTest , test.T300_PyJobDistributor.TestPyJobDistributor
• temperature() : HemeBindingMover
• Tensor() : Tensor
• termini_score() : TCDock
• test() : detail::is_streamable< T, Char > , IsctFast , ui::ui_lib_test
• test_basic() : FunctorTest , pyrosetta.tests.distributed.cluster.skip_command_line_test.BasicTest , pyrosetta.tests.distributed.test_dask.TestDaskDistribution
• test_cart_graft() : myspace::GraftTester
• test_cif_io() : pyrosetta.tests.bindings.core.test_pose.TestPoseIO
• test_clients() : pyrosetta.tests.distributed.cluster.test_smoke.MultipleClientsTest
• test_clone() : pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed
• test_compression() : FunctorTest
• test_concurrent_multi_task() : pyrosetta.tests.distributed.test_concurrency.TestConcurrentScripts
• test_concurrent_on_task() : pyrosetta.tests.distributed.test_concurrency.TestConcurrentScripts
• test_concurrent_score() : pyrosetta.tests.distributed.test_concurrency.TestConcurrentScripts
• test_detached_scores() : pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest
• test_detached_scores_in_protocol() : pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest
• test_detached_scores_with_reserve_scores() : pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest
• test_file_io() : pyrosetta.tests.bindings.core.test_pose.TestPoseIO
• test_functor_async_sequence() : FunctorTest
• test_functor_sequence() : FunctorTest
• test_generate_builtin_clients() : pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest
• test_generate_multi_user_clients() : pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest
• test_generate_partition_clients() : pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest
• test_generate_user_client() : pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest
• test_gil_score() : pyrosetta.tests.distributed.test_gil.TestGIL
• test_gil_sleep() : pyrosetta.tests.distributed.test_gil.TestGIL
• test_ignore_errors() : pyrosetta.tests.distributed.cluster.test_smoke.SmokeTest
• test_interfaces() : InterfaceFeaturesTests
• test_jd() : test.T300_PyJobDistributor.TestPyJobDistributor
• test_jd_at() : test.T300_PyJobDistributor.TestPyJobDistributor
• test_jd_serializable_scores() : test.T300_PyJobDistributor.TestPyJobDistributor
• test_jd_unserializable_scores() : test.T300_PyJobDistributor.TestPyJobDistributor
• test_labels() : pyrosetta.tests.bindings.core.test_pose.TestPoseResidueLabelAccessor
• test_load_pdb() : test.T010_LoadPDB.LoadPDBTest
• test_logging() : pyrosetta.tests.distributed.cluster.test_logging.LoggingTest
• test_mmtf_io() : pyrosetta.tests.bindings.core.test_pose.TestPoseIO
• test_move() : Benchmark , ExemplarMover , Minimize , NCMinimize , protocols::moves::FragCaptureMover , protocols::moves::SimpleCstMover , RamaTestMover , ScTrials , TestJD2Mover
• test_multimodel_pdb_io() : pyrosetta.tests.bindings.core.test_pose.TestPoseIO , pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed
• test_my_struct() : testers::test_my_struct
• test_node_serialization() : NodeTest
• test_node_upload_and_download() : NodeTest
• test_p() : test.T850_SubClassing.PyOverloadTest , utility::py::OverloadTest
• test_packed_pose_io() : pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed
• test_pair_search() : pyrosetta.tests.protocols.indexed_structure_store.test_search.TestStructureSearch
• test_pdbstring_io() : test.T010_LoadPDB.LoadPDBTest
• test_pose_cache() : pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor
• test_pose_io() : pyrosetta.tests.bindings.core.test_pose.TestPoseIO
• test_poses_from_files_io() : pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed
• test_poses_from_sequences_io() : pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed
• test_poses_to_silent() : pyrosetta.tests.bindings.core.test_pose.TestPosesToSilent
• test_project_serialization() : NodeTest
• test_rb_min_graft() : myspace::GraftTester
• test_ref() : test.T850_SubClassing.PyOverloadTest , utility::py::OverloadTest
• test_rep_search() : pyrosetta.tests.protocols.indexed_structure_store.test_search.TestStructureSearch
• test_reporter() : InterfaceFeaturesTests
• test_reproducibility_from_reproduce() : pyrosetta.tests.distributed.cluster.test_reproducibility.TestReproducibilityMulti
• test_reproducibility_from_reproduce_filter_results() : pyrosetta.tests.distributed.cluster.test_reproducibility.TestReproducibilityMulti
• test_reproducibility_minimizer_nstruct() : pyrosetta.tests.distributed.cluster.test_reproducibility.TestReproducibility
• test_reproducibility_minimizer_nstruct_filter_results() : pyrosetta.tests.distributed.cluster.test_reproducibility.TestReproducibility
• test_reproducibility_packer_nstruct() : pyrosetta.tests.distributed.cluster.test_reproducibility.TestReproducibility
• test_reproducibility_packer_nstruct_filter_results() : pyrosetta.tests.distributed.cluster.test_reproducibility.TestReproducibility
• test_reproducibility_packer_nstruct_multi() : pyrosetta.tests.distributed.cluster.test_reproducibility.TestReproducibilityMulti
• test_reproducibility_packer_nstruct_multi_decoy_ids() : pyrosetta.tests.distributed.cluster.test_reproducibility.TestReproducibilityMulti
• test_reproducibility_packer_nstruct_multi_decoy_ids_filter_results() : pyrosetta.tests.distributed.cluster.test_reproducibility.TestReproducibilityMulti
• test_reproducibility_packer_nstruct_multi_filter_results() : pyrosetta.tests.distributed.cluster.test_reproducibility.TestReproducibilityMulti
• test_reproducibility_packer_separate() : pyrosetta.tests.distributed.cluster.test_reproducibility.TestReproducibility
• test_reproducibility_packer_separate_filter_results() : pyrosetta.tests.distributed.cluster.test_reproducibility.TestReproducibility
• test_residue_selector_ctors() : test.T121_core.TestResidueSelectors
• test_residue_selectors() : test.T121_core.TestResidueSelectors
• test_residues() : pyrosetta.tests.bindings.core.test_pose.TestPoseResidueAccessor
• test_resources() : pyrosetta.tests.distributed.cluster.test_smoke.ResourcesTest
• test_resources_clients() : pyrosetta.tests.distributed.cluster.test_smoke.ResourcesTest
• test_rmsd_calc() : pyrosetta.tests.numeric.test_alignment.TestAlignment
• test_rosetta_scripts() : pyrosetta.tests.distributed.test_dask.TestDaskDistribution
• test_roundtrip_file() : test.T010_LoadPDB.LoadPDBTest
• test_roundtrip_pdb() : test.T010_LoadPDB.LoadPDBTest
• test_roundtrip_scored_pdb() : test.T010_LoadPDB.LoadPDBTest
• test_save_all() : pyrosetta.tests.distributed.cluster.test_smoke.SaveAllTest
• test_save_all_dry_run() : pyrosetta.tests.distributed.cluster.test_smoke.SaveAllTest
• test_score_serialization() : pyrosetta.tests.bindings.core.test_pose.TestPoseScoresAccessor
• test_score_smoke_test() : pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed
• test_scores() : pyrosetta.tests.bindings.core.test_pose.TestPoseScoresAccessor
• test_serialization() : pyrosetta.tests.distributed.cluster.test_smoke.SerializationTest
• test_silent_io() : pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed
• test_single_search() : pyrosetta.tests.protocols.indexed_structure_store.test_search.TestStructureSearch
• test_smoke() : pyrosetta.tests.distributed.cluster.test_smoke.SmokeTest
• test_smoke_multi() : pyrosetta.tests.distributed.cluster.test_smoke.SmokeTestMulti
• test_smoke_multi_from_instance() : pyrosetta.tests.distributed.cluster.test_smoke.SmokeTestMulti
• test_superimpose() : pyrosetta.tests.numeric.test_alignment.TestAlignment
• test_task_serialization() : NodeTest
• test_task_upload() : FunctorTest
• test_task_upload_and_download() : NodeTest
• test_timing_multi_instance() : pyrosetta.tests.distributed.cluster.test_smoke.RuntimeTest
• test_timing_single_instance() : pyrosetta.tests.distributed.cluster.test_smoke.RuntimeTest
• test_update_score() : pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed
• test_viewer_with_none() : pyrosetta.tests.distributed.test_viewer.TestViewer
• test_viewer_with_pdbfiles() : pyrosetta.tests.distributed.test_viewer.TestViewer
• test_viewer_with_poses() : pyrosetta.tests.distributed.test_viewer.TestViewer
• test_worker_extra() : pyrosetta.tests.distributed.test_dask_worker.TestDaskArgs
• TestJD2Mover() : TestJD2Mover
• TestMMOP() : TestMMOP
• TestQuickRelaxMover() : TestQuickRelaxMover
• text_style() : text_style
• then_expression() : numeric::expression_parser::ITEExpression
• theta() : numeric::EulerAngles< T > , numeric::sphericalVector< T >
• theta_degrees() : numeric::EulerAngles< T >
• theta_radians() : numeric::EulerAngles< T >
• ThisApplication() : ThisApplication
• thread_manager_initialization_begun() : basic::thread_manager::RosettaThreadManagerInitializationTracker
• thread_manager_was_initialized() : basic::thread_manager::RosettaThreadManagerInitializationTracker
• thread_num() : TCDock
• three_fine_projections_from_xyz() : SimulateCryoMover
• three_projections_from_xyz() : SimulateCryoMover
• throw_not_array() : utility::json_spirit::Json_grammer< Value_type, Iter_type >
• throw_not_colon() : utility::json_spirit::Json_grammer< Value_type, Iter_type >
• throw_not_object() : utility::json_spirit::Json_grammer< Value_type, Iter_type >
• throw_not_pair() : utility::json_spirit::Json_grammer< Value_type, Iter_type >
• throw_not_string() : utility::json_spirit::Json_grammer< Value_type, Iter_type >
• throw_not_value() : utility::json_spirit::Json_grammer< Value_type, Iter_type >
• tick() : pyrosetta.tests.distributed.test_gil.HeartBeat , ui::task::Functor
• time() : detail::chrono_formatter< FormatContext, OutputIt, Rep, Period >
• Timer() : basic::gpu::Timer
• Times() : basic::sampling::orientations::Quaternion
• timing_protocol_1() : pyrosetta.tests.distributed.cluster.test_smoke.RuntimeTest
• timing_protocol_2() : pyrosetta.tests.distributed.cluster.test_smoke.RuntimeTest
• titrate_pH() : PhProtocol
• tmpbuf() : numeric::fourier::kiss_dct_state , numeric::fourier::kiss_fftnd_state , numeric::fourier::kiss_fftndr_state , numeric::fourier::kiss_fftr_state , numeric::fourier::kiss_fftsplit_state
• TNM() : TNM
• to_bare_name() : utility::file::FileName
• to_base64() : pyrosetta.bindings.scores.serialization.PoseScoreSerializerBase
• to_base64_pickle() : pyrosetta.bindings.scores.serialization.PoseScoreSerializerBase
• to_component() : enumerate_junctions.DHR , enumerate_junctions.Junction
• to_default() : ObjexxFCL::FArray1< T > , ObjexxFCL::FArray2< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::FArray< T > , utility::options::Option , utility::options::ScalarOption , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption , utility::options::VectorOption_T_< K, T >
• to_diag() : numeric::xyzMatrix< T > , ObjexxFCL::FArray2< T >
• to_esc() : detail::ansi_color_escape< Char >
• to_identity() : numeric::BodyPosition< T > , numeric::Quaternion< T > , numeric::xyzMatrix< T > , ObjexxFCL::FArray2< T >
• to_local_coordinate() : numeric::HomogeneousTransform< T >
• to_local_name() : utility::file::FileName
• to_pickle() : pyrosetta.bindings.scores.serialization.PoseScoreSerializerBase
• to_quaternion() : numeric::xyzTransform< T >
• to_rotation_matrix() : numeric::EulerAngles< T >
• to_string() : enumerate_junctions.Component , InterfaceHit , numeric::expression_parser::FunctionToken , numeric::expression_parser::LiteralToken , numeric::expression_parser::SimpleToken , numeric::expression_parser::Token , numeric::expression_parser::VariableToken , numeric::interpolation::Histogram< X, Y > , numeric::kdtree::KDPoint , numeric::Quaternion< T > , numeric::xyzVector< T > , SpacegroupHit , ui::task::Task , utility::tag::Tag
• to_zero() : ObjexxFCL::FArray< T >
• TokenHub() : utility::signals::TokenHub< ReturnType, Signal >
• TokenSet() : numeric::expression_parser::TokenSet
• tolerance() : numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• top() : InterfaceHitDatabase , numeric::expression_parser::TokenSet
• topology_updated_callback() : ui::task::Node
• torsion() : TorsionList
• torsion2big_bin() : PrintFeatures
• TorsionList() : TorsionList
• TorsionVectorMover() : TorsionVectorMover
• total_atom_clashes() : GlycanClashCheckMover
• total_counts() : numeric::MultiDimensionalHistogram
• total_residue_clashes() : GlycanClashCheckMover
• total_threads() : basic::thread_manager::RosettaThreadManager , basic::thread_manager::RosettaThreadManagerInitializationTracker
• trace() : numeric::xyzMatrix< T >
• trace_line() : binder::Context
• traceback() : utility::excn::Exception
• Tracer() : basic::Tracer
• tracer_impl() : basic::Tracer
• tracer_proxy_impl() : basic::Tracer::TracerProxy
• TracerImpl() : basic::TracerImpl
• TracerProxy() : basic::Tracer::TracerProxy
• TracerProxyImpl() : basic::TracerImpl::TracerProxyImpl
• TracerToFile() : basic::TracerToFile
• train() : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::CubicSpline , numeric::interpolation::spline::PolycubicSpline< N > , numeric::interpolation::spline::PolycubicSpline< 1 > , numeric::interpolation::spline::PolycubicSpline< 2 > , numeric::interpolation::spline::TricubicSpline
• trajectory_file_name() : core::pack::annealer::FixbbSimAnnealer
• transaction() : utility::sql_database::transaction
• transform() : numeric::BodyPosition< T > , pointGroupHit
• transform_map() : CrystFFTDock
• transform_map_offset0() : CrystFFTDock
• transform_pdb() : CrystCluster , CrystFFTDock
• transformed() : numeric::BodyPosition< T >
• translate() : numeric::geometry::BoundingBox< T >
• Translate() : numeric::VoxelGrid< T >
• translate_virt_to_CoM() : apps::pilot::SampleSecondaryStructureAlignmentMover
• translation() : numeric::geometry::hashing::xyzStripeHash , numeric::geometry::hashing::xyzStripeHashWithMeta< T >
• translation_real() : numeric::geometry::hashing::xyzStripeHash
• transpose() : numeric::MathMatrix< T > , numeric::xyzMatrix< T > , ObjexxFCL::FArray2< T >
• transposed() : numeric::xyzMatrix< T >
• transposeRowSize() : numeric::fourier::SO3coeffs
• treat_AND_and_OR_as_operators() : numeric::expression_parser::ArithmeticScanner
• treat_NOT_as_operator() : numeric::expression_parser::ArithmeticScanner
• tree() : numeric::kdtree::KDNode
• tree_edge() : PathFinder , RerootRestypeVisitor , utility::graph::null_bfs_prune_visitor , utility::graph::RingEdgeAnnotationVisitor< Graph, EdgeMap, PathMap > , utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >
• tree_init() : numeric::geometry::hashing::SixDCoordinateBinner
• tree_size() : ui::task::Node
• tree_synced() : ui::task::Node
• TreeNodeModel() : ui::util::TreeNodeModel< T >
• trial_counter() : apps::pilot::AlignChunkMover , apps::pilot::MultiTemplateAlignChunkMover
• TriazoleCreator() : TriazoleCreator
• TricubicSpline() : numeric::interpolation::spline::TricubicSpline
• trim() : ObjexxFCL::Cstring , ObjexxFCL::Fstring , utility::options::OptionCollection
• trim_whitespace() : ObjexxFCL::Cstring , ObjexxFCL::Fstring
• trimmed() : ObjexxFCL::Cstring , ObjexxFCL::Fstring , utility::options::OptionCollection
• trimmed_whitespace() : ObjexxFCL::Cstring , ObjexxFCL::Fstring
• trimmed_whitespace_range() : ObjexxFCL::Fstring
• Triple() : basic::sampling::orientations::Triple
• TrizaolamerDockDesignMinimizeMover() : TrizaolamerDockDesignMinimizeMover
• truncate_xyz() : SimulateCryoMover
• truncating_iterator() : detail::truncating_iterator< OutputIt, std::false_type > , detail::truncating_iterator< OutputIt, std::true_type >
• truncating_iterator_base() : detail::truncating_iterator_base< OutputIt >
• try_reserve() : detail::buffer< T >
• try_resize() : detail::buffer< T >
• TryScoreFilter() : TryScoreFilter
• tuple_arg_join() : tuple_arg_join< Char, T >
• twiddles() : numeric::fourier::kiss_fft_state
• two() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• TwoChainInterface() : TwoChainInterface
• TwoChainTenANeighbors() : TwoChainTenANeighbors
• TwoDHistogram() : numeric::histograms::TwoDHistogram< key1, key2 >
• type() : basic::resource_manager::locator::DatabaseResourceLocator , basic::resource_manager::locator::FileListResourceLocator , basic::resource_manager::locator::FileSystemResourceLocator , basic::resource_manager::locator::NullResourceLocator , basic::resource_manager::ResourceLocator , basic_format_arg< Context > , basic_format_args< Context > , numeric::expression_parser::FunctionToken , numeric::expression_parser::LiteralToken , numeric::expression_parser::SimpleToken , numeric::expression_parser::Token , numeric::expression_parser::VariableToken , protocols::antibody::AntibodyInfoRMOptions , ui::task::Node , utility::json_spirit::Value_impl< Config > , utility::tag::XMLSchemaAttribute , utility::tag::XMLSchemaModelGroup , utility::tag::XMLSchemaType
• type_name() : MyFeaturesReporter , protocols::jumping::LibraryJumpSetup , protocols::jumping::SpecificJumpSetup , utility::tag::XMLSchemaElement , utility::tag::XMLSchemaType
• type_of() : ObjexxFCL::Fstring
• type_string() : utility::options::AnyOption< T > , utility::options::AnyVectorOption< T > , utility::options::BooleanOption , utility::options::BooleanVectorOption , utility::options::FileOption , utility::options::FileVectorOption , utility::options::IntegerOption , utility::options::IntegerVectorOption , utility::options::Option , utility::options::PathOption , utility::options::PathVectorOption , utility::options::RealOption , utility::options::RealVectorOption , utility::options::ResidueChainVectorOption , utility::options::StringOption , utility::options::StringVectorOption
• typed_node() : detail::dynamic_arg_list::typed_node< T >