Here is a list of all class members with links to the classes they belong to:
- g -
- g
: rgb
- G
: Solver
- G_bar
: Solver
- gamma
: Kernel
, Spacegroup
, svm_parameter
- gamma_
: Spacegroup
- gap_bound_cst_score()
: ClosabilityScore
- gap_lengths_
: ScoreFragmentSetMover
- gap_upper_boundary()
: ClosabilityScore
- gap_weights_
: ScoreFragmentSetMover
- gather_hits()
: TCDock
- gatom
: xyzStripeHashWithMeta
- gauss_multiplier_
: SimulateCryoMover
- gauss_offset_
: SimulateCryoMover
- gaussian()
: numeric::random::RandomGenerator
- gaussian_gset_
: numeric::random::RandomGenerator
- gaussian_iset_
: numeric::random::RandomGenerator
- gcount()
: utility::io::izstream
- gdim
: xyzStripeHashWithMeta
- gdt0
: myspace::Evaluator
- gdt_refresh_cut_
: myspace::Scheduler
- gdtmax_
: myspace::Scheduler
- ge()
: utility::vectorL_ZeroSelector< bool >
, utility::vectorL_ZeroSelector< false >
- gen()
: utility::keys::KeyLookup< K >
, utility::keys::lookup::gen< K >
- gen_rand_all()
: numeric::random::mt19937_RG
- gen_test_set()
: pyrosetta.tests.protocols.indexed_structure_store.test_search.TestStructureSearch
- generalEvent()
: PosePyObserver
- GeneralFileContents()
: utility::io::GeneralFileContents
- GeneralFileContentsVector()
: utility::io::GeneralFileContentsVector
- GeneralFileManager()
: utility::io::GeneralFileManager
- GeneralFileManagerVector()
: utility::io::GeneralFileManagerVector
- GeneralizedEigenSolver()
: numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
- generate()
: binder::Context
, BinderVisitor
, pyrosetta.distributed.cluster.core.PyRosettaCluster
- generate_batch()
: CloudArchiveManagerWrapper
- generate_csts()
: SetupHotspotMover
- generate_dock_high_res()
: protocols::antibody::design::AntibodyDesignMoverGenerator
- generate_dock_low_res()
: protocols::antibody::design::AntibodyDesignMoverGenerator
- generate_extended_pose()
: protocols::abinitio::JumpSpecificAbrelax
- generate_hbond_geometry()
: generate_hbond_geometry
- generate_jump_frags()
: protocols::jumping::SpecificJumpSetup
- generate_minimizer()
: protocols::antibody::design::AntibodyDesignMoverGenerator
- generate_prefix_code()
: binder::ClassBinder
- generate_protocol_mover()
: protocols::antibody::design::AntibodyDesignMoverGenerator
- generate_relax()
: protocols::antibody::design::AntibodyDesignMoverGenerator
- generate_repack_antigen_ab_interface()
: protocols::antibody::design::AntibodyDesignMoverGenerator
- generate_repack_cdrs()
: protocols::antibody::design::AntibodyDesignMoverGenerator
- generate_roc_curve()
: numeric::RocCurve
- generate_scorefxn()
: protocols::abinitio::JumpSpecificAbrelax
- generateExtendedPose()
: protocols::abinitio::ApplicationContext
- generateIcosahedralSamples()
: numeric::UniformRotationSampler
- Generator()
: utility::json_spirit::Generator< Value_type, Ostream_type >
- generator1()
: Arch
, ArchP4_42
, ArchP6_32
- generator2()
: Arch
, ArchP4_42
, ArchP6_32
- generator_
: numeric::random::RandomGenerator
- generous_hbond()
: BuriedUnsatPolarsFinder
- genWigner_ds()
: numeric::fourier::SO3coeffs
- get()
: basic::datacache::ConstDataMap
, basic::datacache::DataCache< Data >
, basic::datacache::DataMap
, basic::datacache::HierarchicalDataMap
, basic_format_args< Context >
, binder::Config
, buffered_file
, detail::locale_ref
, error_code
, numeric::AxisRotationSampler
, numeric::UniformRotationSampler
, ObjexxFCL::Fstring
, pseudoTrace
, pseudoTraceRecords
, pyrosetta.distributed.cluster.logging_handlers.MultiSocketHandler
, SetOfClusters
, ui::task::Updater
, utility::DenseBoolMap< NUM_ELEMS, BASE_INDEX >
, utility::io::icstream
, utility::io::irstream
, utility::io::izstream
, utility::pointer::DeepCopyOP< T >
, utility::thread::MutableCache< K, V >
, utility::thread::SharedThreadLocalData< T >
- get_A()
: BBG_Cyclic_Mover
- get_aa_counts()
: HBondReporter
- get_aa_statistics()
: MPInterfaceStatistics
- get_alignment_from_chunk_mapping()
: apps::pilot::MultiTemplateAlignChunkMover
- get_alignment_from_template()
: apps::pilot::MultiTemplateAlignChunkMover
, ChallengeMover
- get_all_channels_string()
: basic::Tracer
, basic::TracerImpl
- get_all_derivs()
: numeric::interpolation::spline::PolycubicSpline< N >
, numeric::interpolation::spline::PolycubicSpline< 1 >
, numeric::interpolation::spline::PolycubicSpline< 2 >
- get_allocator()
: basic_memory_buffer< T, SIZE, Allocator >
- get_alternative_search_paths()
: utility::io::izstream
- get_angle_and_offset
: pointGroupHit
- get_angle_stdev()
: ZincMatchFilter
- get_angle_weight()
: ZincMatchFilter
- get_arg()
: basic_printf_context< OutputIt, Char >
, detail::specs_handler< ParseContext, Context >
- get_argv()
: utility::options::OptionCollection
- get_array()
: utility::json_spirit::Value_impl< Config >
- get_assigned_frags()
: FragMonteCarlo
- get_atom_sasa_cutoff()
: BacksideHbondFinderMover
- get_author_list()
: basic::citation_manager::UnpublishedModuleInfo
- get_avg_charge()
: MPInterfaceStatistics
- get_avg_hydrophobicity()
: MPInterfaceStatistics
- get_avg_number_charges()
: MPInterfaceStatistics
- get_background()
: text_style
- get_best_sub1_contact_delta_rotations()
: TCDock
- get_bool()
: utility::json_spirit::Value_impl< Config >
- get_boundary_functions()
: numeric::interpolation::spline::SplineGenerator
- get_box_size_multiplier()
: SimulateCryoMover
- get_C()
: pseudoTrace
, Solver
- get_cached_power()
: detail::dragonbox::cache_accessor< double >
, detail::dragonbox::cache_accessor< float >
- get_candidate_frags()
: FragMonteCarlo
- get_cdrs_movemap_with_overhang()
: protocols::antibody::design::AntibodyDesignMoverGenerator
- get_chain_terminii_()
: TwoChainInterface
, TwoChainTenANeighbors
- get_chains_from_cmd()
: MPInterfaceStatistics
- get_charge()
: MPInterfaceStatistics
- get_chunk_size()
: utility::sql_database::session
- get_citation_by_doi()
: basic::citation_manager::CitationManager
- get_citations_formatted()
: basic::citation_manager::CitationCollection
- get_clash_score_exact()
: CrystFFTDock
- get_closest_res_for_sc_attach()
: PoseWrap
- get_cmp1()
: TCDock
- get_cmp2()
: TCDock
- get_col()
: numeric::MathMatrix< T >
- get_column_name()
: basic::database::insert_statement_generator::RowDataBase
- get_command_lines()
: mutant_modeler.MutantModeler
- get_component_doc()
: pyrosetta.distributed.docs.InlineDocs
- get_const_ptr()
: basic::datacache::DataCache< Data >
- get_contacting_stub()
: MatchSet
- get_contacts_by_component()
: TCDock
- get_crc()
: utility::io::izstream
, utility::io::ozstream
, zlib_stream::basic_unzip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
, zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT >
, zlib_stream::basic_zip_istreambase< Elem, Tr, ElemA, ByteT, ByteAT >
, zlib_stream::basic_zip_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT >
, zlib_stream::basic_zip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
- get_current_c_term()
: enumerate_junctions.Design
- get_current_c_term_dhr()
: enumerate_junctions.Design
- get_current_n_term()
: enumerate_junctions.Design
- get_current_n_term_dhr()
: enumerate_junctions.Design
- get_data()
: Cache
- get_data_
: ui::task::Node
- get_data_callback()
: ui::task::Node
- get_db_mode()
: utility::sql_database::session
- get_db_name()
: utility::sql_database::session
- get_db_partition()
: utility::sql_database::session
- get_db_session()
: utility::sql_database::DatabaseSessionManager
- get_default()
: ui::network::StringArgument
- get_default_formatted_citation()
: basic::citation_manager::Citation
- get_delta()
: numeric::interpolation::spline::CubicSpline
- get_deriv()
: numeric::interpolation::spline::PolycubicSpline< N >
, numeric::interpolation::spline::PolycubicSpline< 1 >
, numeric::interpolation::spline::PolycubicSpline< 2 >
- get_dihedral_stdev()
: ZincMatchFilter
- get_dihedral_weight()
: ZincMatchFilter
- get_disp_dofs()
: Arch
, ArchP4_42
, ArchP6_32
- get_distance_measure()
: ClusterCycDisulf
- get_distance_stdev()
: ZincMatchFilter
- get_distance_weight()
: ZincMatchFilter
- get_distmax()
: protocols::moves::SimpleCstMover
- get_distmin()
: protocols::moves::SimpleCstMover
- get_dock_tf()
: protocols::antibody::design::AntibodyDesignMoverGenerator
- get_dsecox()
: numeric::interpolation::spline::BicubicSpline
, numeric::interpolation::spline::CubicSpline
, numeric::interpolation::spline::TricubicSpline
- get_dsecoxy()
: numeric::interpolation::spline::BicubicSpline
, numeric::interpolation::spline::TricubicSpline
- get_dsecoxyz()
: numeric::interpolation::spline::TricubicSpline
- get_dsecoxz()
: numeric::interpolation::spline::TricubicSpline
- get_dsecoy()
: numeric::interpolation::spline::BicubicSpline
, numeric::interpolation::spline::TricubicSpline
- get_dsecoyz()
: numeric::interpolation::spline::TricubicSpline
- get_dsecoz()
: numeric::interpolation::spline::TricubicSpline
- get_dt()
: pyrosetta.tests.distributed.cluster.test_smoke.RuntimeTest
- get_edge()
: utility::graph::UEVertex< V, E >
, utility::graph::UpperEdgeGraph< V, E >
- get_edge_exists()
: utility::graph::Digraph
, utility::graph::Graph
, utility::graph::LowMemGraph< _LMNode, _LMEdge >
- get_emphasis()
: text_style
- get_enumerated_module_type_name()
: basic::citation_manager::CitationCollection
- get_file_contents()
: utility::io::FileContentsMap
, utility::io::GeneralFileContents
, utility::io::GeneralFileContentsVector
, utility::io::GeneralFileManager
, utility::io::GeneralFileManagerVector
- get_file_contents_ref()
: utility::io::FileContentsMap
- get_first_node_ind()
: utility::graph::Edge
, utility::graph::LowMemEdge
- get_foreground()
: text_style
- get_formatted_citation()
: basic::citation_manager::Citation
- get_fragment_store()
: pyrosetta.protocols.h5_fragment_store_provider.H5PyFragmentStoreProvider
- get_G()
: BBG_Cyclic_Mover
- get_gauss_multiplier()
: SimulateCryoMover
- get_gauss_offset()
: SimulateCryoMover
- get_gzip_crc()
: zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT >
- get_gzip_data_size()
: zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT >
- get_head_node()
: utility::graph::DirectedEdge
- get_head_node_ind()
: utility::graph::DirectedEdge
- get_helix_center()
: apps::pilot::HelixMover
- get_helix_centers()
: apps::pilot::HelixMover
- get_helix_vectors()
: apps::pilot::HelixMover
- get_high_res_command_lines()
: mutant_modeler.MutantModeler
- get_highest_intrahub_seqsep()
: ConstraintConfig
- get_hydrophobicity()
: MPInterfaceStatistics
- get_id()
: basic_format_args< Context >
- get_identifier()
: ui::network::BowmanModel
- get_image_stack()
: SimulateCryoMover
- get_in_size()
: utility::io::izstream
, utility::io::ozstream
, zlib_stream::basic_unzip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
, zlib_stream::basic_zip_istreambase< Elem, Tr, ElemA, ByteT, ByteAT >
, zlib_stream::basic_zip_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT >
, zlib_stream::basic_zip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
- get_indices()
: GridWeights
, numeric::interpolation::InterpolatedPotential< N >
- get_informative_name()
: enumerate_junctions.Design
- get_inout_orientation()
: MPInterfaceStatistics
- get_input_pose_length()
: JDmover
- get_instance()
: utility::SingletonBase< T >
, utility::thread::SharedThreadLocalData< T >
- get_int()
: utility::json_spirit::Value_impl< Config >
- get_int64()
: utility::json_spirit::Value_impl< Config >
- get_integration_test()
: SimulateCryoMover
- get_interface_residues()
: CrystDesign
- get_interfaces_allatom()
: CrystFFTDock
- get_interpolator()
: numeric::interpolation::spline::SplineGenerator
- get_istream()
: utility::Inline_File_Provider
, zlib_stream::basic_unzip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
- get_item()
: ui::task::ProjectModel
- get_iterations()
: SamplingManager
- get_L_move()
: BBG_Cyclic_Mover
- get_L_prime()
: BBG_Cyclic_Mover
- get_lb_function_cutoff()
: numeric::interpolation::spline::Interpolator
- get_lb_function_intercept()
: numeric::interpolation::spline::Interpolator
- get_lb_function_slope()
: numeric::interpolation::spline::Interpolator
- get_lbdy()
: numeric::interpolation::spline::SplineGenerator
- get_lbx()
: numeric::interpolation::spline::SplineGenerator
- get_lby()
: numeric::interpolation::spline::SplineGenerator
- get_line()
: VallReader
- get_listener()
: basic::mpi::MessageListenerFactory
- get_local_print_channel_name()
: basic::Tracer
, basic::TracerImpl
- get_local_sequence_mapping()
: apps::pilot::AlignChunkMover
- get_local_zn_coords()
: zinc_stats::ZincStatisticGenerator
- get_local_zn_positions_for_residue()
: zinc_stats::ZincStatisticGenerator
- get_low_res_command_lines()
: mutant_modeler.MutantModeler
- get_mathmatrix()
: numeric::MathNTensor< T, N >
- get_mean_dt()
: pyrosetta.tests.distributed.cluster.test_smoke.RuntimeTest
- get_med_res_command_lines()
: mutant_modeler.MutantModeler
- get_moments()
: TCDock
- get_moveable_dofs()
: Spacegroup
- get_movemap_from_task()
: protocols::antibody::design::AntibodyDesignMoverGenerator
- get_multivec()
: GridWeights
- get_mut_positions()
: mutant_modeler.MutantModeler
- get_N()
: pseudoTrace
- get_name()
: A3BHbsCreatorMover
, A3BHbsDockDesignMinimizeMover
, A3BPeptideBuilder
, abbinding
, AbInitio_MPI
, AnchorFinderMover
, APDBCMover
, apps::pilot::AlignChunkMover
, apps::pilot::CustomFragmentMover
, apps::pilot::CustomStarTreeMover
, apps::pilot::HelixMover
, apps::pilot::MultiTemplateAlignChunkMover
, apps::pilot::SampleSecondaryStructureAlignmentMover
, AssignClusterToolMover
, B3AADihedralGrabber
, BacksideHbondFinderMover
, BBG_Cyclic_Mover
, BBMover
, Benchmark
, BreadthMover
, BuriedUnsatPolarsFinder
, CalcCdrRms
, CalcIrms
, CalcsTestMover
, CartRefineWrapperMover
, CaToAllAtom
, CenRelaxMover
, CenRotCanonicalMover
, CenRotDockingMover
, CenRotRBRelaxMover
, CenRotRelaxMover
, CenRotSidechainMover
, ChallengeMover
, ChiMover
, ClearPoseHeader
, CloseContactWithResidue
, ClosureMover
, ClusterCycDisulf
, ColorByLipidType
, complex_interface_optimize
, compute_Irmsd
, ComputeSAXSSpectrum
, ConcertedTorsionMover
, ConsensusFragmentMover
, ConstraintToolMover
, CovalentPeptidomimeticCreator
, CovalentPeptidomimeticDockDesign
, CrystCluster
, CrystDesign
, CrystFFTDock
, CrystHbondsReporter
, CrystRelax
, CustomMover
, CycBBMover
, DeleteSegments
, Designer
, DesignGlycansProtocol
, DetectSymmetry
, DockFragmentsMover
, DockGlycansProtocol
, DougsDockDesignMinimizeMagicMover
, dsRNA_grow
, DuboisChiMover
, DummyMover
, ElecDensMinPackMinMover
, ExemplarMover
, ExposedStrandMover
, ExtractATD
, FaSolReporter
, FindOptimalHydrophobicThk
, FitMover
, FloatScMonteCarlo
, FloatScRandomChi
, FloatScRotMover
, FloppyTailMover
, Foldptn
, FoldTreeOutputter
, ForgetMover
, FragmentAssemblyMover
, FragmentBasedDesign
, generate_hbond_geometry
, GlycanClashCheckMover
, GlycomutagenesisProtocol
, GraftDesignCDRs
, hackLAMMover
, HBondReporter
, HbondZinc
, HbondZincBackbone
, HbsCreatorMover
, HbsDesignMover
, HDdesignMover
, HDmakerMover
, HelicalPdbGeneratorMover
, HemaggTrimer
, HemeBindingMover
, HemeReplace
, HotspotPlacementMover
, IAMover
, IdentifyCDRClusters
, InjectorMover
, InterfaceDDGMover
, InterfaceFeaturesTests
, InterfaceStrandFinderMover
, InverseRotlibDumpMover
, JDmover
, JDtestmover
, khSandbox2
, KHSandbox
, khSandbox
, LDConverterMover
, LigandDockingHbondsReporter
, LoadMembraneMover
, LoopHash_Analyze
, LoopHashRelax_Sampler
, MakeCanonicalHelix
, MakeSegmentFileMPI
, MembraneDockingxMover
, MembraneMinMover
, MembraneRelaxMover
, MembraneSampleMover
, MembraneSfxnMover
, MembraneTransformMover
, MembraneViewMover
, MetalSiteFinderMover
, MikeLinkerMover
, MinCenrotMover
, Minimize
, MinPackMinMover
, MinTestMover
, MinToolMover
, MirrorSymmTest
, MotifDock
, MoveThenFixH
, MoveThenFixHMin
, MPDomainAssembly
, MPFindInterfaceTestMover
, MPFoldingMover
, MPframeworkTest1Mover
, MPframeworkTestMover
, MPInterfaceStatistics
, MPScoreFunctionFingerprintMover
, mtransferase
, MyApp
, MyMover
, MyProtocol
, MyRotMover
, MyScoreMover
, MySlideMover
, myspace::GraftTester
, MyTransMover
, NativeEnsemble
, NCMinimize
, OopDesignMover
, OutputCenrotIntCoord
, OutputMover
, Packing_energies
, PackingAngle
, PairDistance
, PBPotentialMover
, PepMinMover
, PeptiodMovieMover
, PeptoidDesignMover
, PeptoidDihedralGrabber
, PeptoidRotamerRecoverer
, PerturbStruct
, PhDocking
, PhProtocol
, PickBAB
, PrintPDDF
, Protocol_MolecularDynamics
, protocols::antibody::design::AntibodyDesignMoverGenerator
, protocols::moves::FragCaptureMover
, protocols::moves::SimpleCstMover
, RamaTestMover
, RDCScoreMover
, RDCToolMover
, RelaxCDRsMover
, RepackCenrotMover
, RepackMinCenrotMover
, RescoreCenrot
, RescorePDDF
, RescoreSAXS
, RMSByResStatistics
, RmsfMover
, RNA_ScoreMover
, RosettaHolesMover
, RotateSAXS
, run_score_hotspot
, run_score_patchdock_hotspot
, SampleTiltProtocol
, Sasa
, sasa_qdMover
, ScMinMover
, ScoreFragmentSetMover
, ScoreFunctionFingerprintMover
, ScTrials
, SetupHotspotMover
, SetupMover
, SimpleBBMover
, SmoothFragRepackMover
, SolutionRescoreMover
, SpartaSuperDeviationMover
, SSM_energies
, StatefulMover
, StepwiseTorsionMover
, SuperDeviationMover
, SwapElementsMover1
, SwapElementsMover2
, SymRBMover
, test.T850_SubClassing.My_New_Mover
, test.Workshop9_my_shapes.PhiNByXDegreesMover
, TestMMOP
, TestQuickRelaxMover
, TorsionVectorMover
, TriazoleCreator
, TrizaolamerDockDesignMinimizeMover
, UBQ_E2Mover
, UBQ_GTPase_disulfide_Mover
, utility::json_spirit::Config_map< String >
, utility::json_spirit::Config_vector< String >
, ViewMembraneProteinMover
, XMLprinterMover
, xtal_water_bunsat
, zinc1_homodimer_design
, zinc1_homodimer_setup
, zinc2_homodimer_design
, zinc2_homodimer_setup
, zinc_helix_cap
, ZincMatchFilter
, ZincMinimize
, ZincSiteEvaluator
- get_namespace()
: options_class.Option
- get_nature_formatted_citation()
: basic::citation_manager::Citation
- get_neighbor_distance_cutoff()
: BacksideHbondFinderMover
- get_neighbor_residues()
: CrystDesign
- get_new_job_id()
: protocols::jd2::RECONMPIJobDistributor
- get_next_profile()
: SequenceProfileDB
- get_next_size()
: boost::unordered_object_pool< T, UserAllocator >
- get_node()
: ui::util::TreeNodeModel< T >
, utility::graph::Digraph
, utility::graph::DirectedEdge
, utility::graph::Edge
, utility::graph::Graph
, utility::graph::LowMemGraph< _LMNode, _LMEdge >
, utility::graph::LowMemGraphBase
- get_node_index()
: utility::graph::DirectedEdge
, utility::graph::DirectedNode
, utility::graph::Edge
, utility::graph::LowMemNode
, utility::graph::Node
- get_noise_range()
: SimulateCryoMover
- get_nonparametric_rotation_xform()
: ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget
- get_nonparametric_translation_vect()
: ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget
- get_NR()
: SimulateCryoMover
- get_nr_class()
: utility::libsvm::Svm_rosetta
- get_nrot_dofs()
: Spacegroup
- get_nsubdivisions()
: Spacegroup
- get_num_edges_to_larger_indexed_nodes()
: utility::graph::Node
- get_num_edges_to_smaller_indexed_nodes()
: utility::graph::Node
- get_num_points()
: numeric::interpolation::spline::SplineGenerator
- get_number_charges()
: MPInterfaceStatistics
- get_number_cols()
: numeric::MathMatrix< T >
- get_number_elements()
: numeric::MathMatrix< T >
- get_number_hbonds()
: MPInterfaceStatistics
- get_number_of_residues()
: MPInterfaceStatistics
- get_number_pi_stacking()
: MPInterfaceStatistics
- get_number_rows()
: numeric::MathMatrix< T >
- get_obj()
: utility::json_spirit::Value_impl< Config >
- get_op()
: utility::pointer::DeepCopyOP< T >
- get_open_mode()
: basic::resource_manager::locator::FileListResourceLocator
, basic::resource_manager::locator::FileSystemResourceLocator
- get_or_null()
: basic::datacache::HierarchicalDataMap
- get_ostream()
: utility::Inline_File_Provider
, zlib_stream::basic_zip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
- get_other_ind()
: utility::graph::DirectedEdge
, utility::graph::Edge
, utility::graph::LowMemEdge
- get_other_node()
: utility::graph::DirectedEdge
, utility::graph::Edge
, utility::graph::LowMemEdge
- get_out_size()
: utility::io::izstream
, utility::io::ozstream
, zlib_stream::basic_unzip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
, zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT >
, zlib_stream::basic_zip_istreambase< Elem, Tr, ElemA, ByteT, ByteAT >
, zlib_stream::basic_zip_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT >
, zlib_stream::basic_zip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
- get_owner()
: utility::graph::DirectedEdge
, utility::graph::DirectedNode
, utility::graph::Edge
, utility::graph::Node
- get_page()
: job_manager.DatabaseWindow
- get_perlin_noise_multiplier()
: SimulateCryoMover
- get_perlin_noise_offset()
: SimulateCryoMover
- get_phi()
: Link
- get_pixel_size()
: SimulateCryoMover
- get_points()
: numeric::interpolation::spline::SplineGenerator
- get_pq_schema()
: utility::sql_database::session
- get_prefix()
: detail::int_writer< OutputIt, Char, UInt >
- get_protocols()
: pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest
- get_proxy_by_priority()
: basic::TracerImpl
- get_psi()
: Link
- get_ptr()
: basic::datacache::ConstDataMap
, basic::datacache::DataCache< Data >
, basic::datacache::DataMap
- get_Q()
: Kernel
, ONE_CLASS_Q
, QMatrix
, SVC_Q
, SVR_Q
- get_QD()
: Kernel
, ONE_CLASS_Q
, QMatrix
, SVC_Q
, SVR_Q
- get_radius_of_pose()
: CrystFFTDock
- get_random_rotamer()
: CenRotSidechainMover
- get_raw_const_ptr()
: basic::datacache::DataCache< Data >
- get_raw_ptr()
: basic::datacache::DataCache< Data >
- get_real()
: utility::json_spirit::Value_impl< Config >
- get_repack_residues()
: TestQuickRelaxMover
- get_residue_size()
: MPInterfaceStatistics
- get_residues()
: CartPerturber
- get_resolution()
: SimulateCryoMover
- get_resource()
: basic::datacache::DataMap
, basic::resource_manager::ResourceManager
- get_rosetta_thread_index()
: basic::thread_manager::RosettaThreadManager
- get_rounds()
: CartPerturber
- get_row()
: numeric::MathMatrix< T >
- get_rt_over_leap()
: ClosabilityScore
- get_score()
: SomeThing
- get_scores_dict()
: pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest
- get_second_node_ind()
: utility::graph::Edge
, utility::graph::LowMemEdge
- get_seed()
: numeric::random::RandomGenerator
- get_select_item()
: ui::network::BowmanView
- get_selected_jobs()
: job_manager.JobWindow
- get_selection()
: ui::task::ProjectView
- get_self_ptr()
: basic::datacache::CacheableData
, utility::graph::Digraph
, utility::graph::Graph
, utility::tag::Tag
, utility::tag::XMLSchemaRepeatableCTNode
- get_self_weak_ptr()
: basic::datacache::CacheableData
, utility::tag::Tag
, utility::tag::XMLSchemaRepeatableCTNode
- get_session_mysql()
: utility::sql_database::DatabaseSessionManager
- get_session_postgres()
: utility::sql_database::DatabaseSessionManager
- get_session_sqlite3()
: utility::sql_database::DatabaseSessionManager
- get_sidechains_mover_
: HDdesignMover
- get_size()
: MPInterfaceStatistics
- get_sstream()
: utility::Inline_File_Provider
- get_start()
: numeric::interpolation::spline::CubicSpline
- get_static_int()
: utility::py::PyExitCallback
- get_static_string()
: utility::py::PyExitCallback
- get_static_string_const()
: utility::py::PyExitCallback
- get_str()
: utility::json_spirit::Value_impl< Config >
- get_string()
: utility_exit_detail::Stringifier
, utility_exit_detail::Stringy
- get_subwidget()
: ui::ui_protocols::helical_bundle::HelicalBundleDialogueWidget
- get_subwidget_nonconst()
: ui::ui_protocols::helical_bundle::HelicalBundleDialogueWidget
- get_superposition_transformation()
: apps::pilot::AlignChunkMover
- get_surface_complementarity()
: MPInterfaceStatistics
- get_svd_solution()
: basic::svd::SVD_Solver
- get_symmops()
: Spacegroup
- get_tail_node()
: utility::graph::DirectedEdge
- get_tail_node_ind()
: utility::graph::DirectedEdge
- get_target_distance()
: Bola
- get_target_xform()
: Bola
- get_tetrahedral_stdev()
: ZincMatchFilter
- get_tetrahedral_weight()
: ZincMatchFilter
- get_title()
: job_manager.JobWindow
- get_trans_dofs()
: Spacegroup
- get_transaction_mode()
: utility::sql_database::session
- get_transform_distance()
: CrystFFTDock
- get_types()
: dynamic_format_arg_store< Context >
- get_ub_function_cutoff()
: numeric::interpolation::spline::Interpolator
- get_ub_function_intercept()
: numeric::interpolation::spline::Interpolator
- get_ub_function_slope()
: numeric::interpolation::spline::Interpolator
- get_ubdy()
: numeric::interpolation::spline::SplineGenerator
- get_ubx()
: numeric::interpolation::spline::SplineGenerator
- get_uby()
: numeric::interpolation::spline::SplineGenerator
- get_uint64()
: utility::json_spirit::Value_impl< Config >
- get_value()
: utility::json_spirit::Config_map< String >
, utility::json_spirit::Config_vector< String >
, utility::json_spirit::Value_impl< Config >
- get_values()
: numeric::interpolation::spline::BicubicSpline
, numeric::interpolation::spline::CubicSpline
- get_variable()
: numeric::expression_parser::SimpleExpressionCreator
- get_VdRdPhi()
: BBG_Cyclic_Mover
- get_vertex()
: utility::graph::UpperEdgeGraph< V, E >
- get_vertex_ptr()
: utility::graph::UpperEdgeGraph< V, E >
- get_zerr()
: zlib_stream::basic_unzip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
, zlib_stream::basic_zip_istreambase< Elem, Tr, ElemA, ByteT, ByteAT >
, zlib_stream::basic_zip_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT >
, zlib_stream::basic_zip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
- get_zip_stream()
: zlib_stream::basic_unzip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
- GetBoundingBox()
: numeric::VoxelGrid< T >
- getCName()
: options_class.Option
- GetDataCallback
: ui::task::Node
- GetDimension()
: numeric::VoxelGrid< T >
- getDoxygenRow()
: options_class.Option
- GetGridItems()
: numeric::VoxelGrid< T >
- GetIndex()
: numeric::VoxelGrid< T >
- getline
: ObjexxFCL::Fstring
, pdbline
, utility::io::icstream
, utility::io::irstream
, utility::io::izstream
- getMarkdownRow()
: options_class.Option
- getName()
: utility::tag::Tag
- GetNeighbors()
: numeric::VoxelGrid< T >
- GetNeighbors1D()
: numeric::VoxelGrid< T >
- GetNeighborsIn()
: numeric::VoxelGrid< T >
- GetNeighborsMultiDimensional()
: numeric::VoxelGrid< T >
- GetNumberItems()
: numeric::VoxelGrid< T >
- getOneReport()
: PerformanceBenchmark
- getOption()
: utility::tag::Tag
- getOptionCC()
: options_class.Option
- getOptionKeysCC()
: options_class.Option
- getOptionKeysHH()
: options_class.Option
- getOptions()
: utility::tag::Tag
- getParent()
: utility::tag::Tag
- GetPaths()
: utility::graph::RingDetection< Graph >
- getRandom()
: numeric::random::mt19937_RG
, numeric::random::standard_RG
, numeric::random::uniform_RG
- getReport()
: PerformanceBenchmark
- GetResolution()
: numeric::VoxelGrid< T >
- GetRings()
: utility::graph::RingDetection< Graph >
- getSeed()
: numeric::random::mt19937_RG
, numeric::random::standard_RG
, numeric::random::uniform_RG
- GetSqDistanceOutsideBoundingBox()
: numeric::VoxelGrid< T >
- getTag()
: utility::tag::Tag
- getTags()
: utility::tag::Tag
- getter
: pyrosetta.distributed.utility.log.classproperty
- GetTime()
: basic::gpu::Timer
- getTotalMemoryUsage()
: utility::graph::Digraph
, utility::graph::Graph
, utility::graph::LowMemGraph< _LMNode, _LMEdge >
- GetURLHandler()
: GetURLHandler
- getWikiTableRow()
: options_class.Option
- gid
: utility::io::TarFileHeader
- given_names()
: basic::citation_manager::AuthorNames
- given_names_
: basic::citation_manager::AuthorNames
- global_exit_callback()
: utility::py::PyExitCallback
- global_insertion_operator()
: binder::Context
- GLY2_C
: HECTMover
, UBQ_E2Mover
- GLY_C
: HECTMover
, UBQ_E2Mover
- GLY_CA
: HECTMover
, UBQ_E2Mover
- GLY_N
: HECTMover
, UBQ_E2Mover
- glycan_chain_res_atomic_clashes_
: GlycanClashCheckMover
- glycan_chain_res_soft_atomic_clashes_
: GlycanClashCheckMover
- glycan_glycan_res_atomic_clashes_
: GlycanClashCheckMover
- glycan_glycan_res_soft_atomic_clashes_
: GlycanClashCheckMover
- glycan_resnums_
: GlycanClashCheckMover
- GlycanClashCheckMover()
: GlycanClashCheckMover
- GlycomutagenesisProtocol()
: GlycomutagenesisProtocol
- glycosyltransferase_
: GlycomutagenesisProtocol
- gname
: utility::io::TarFileHeader
- go()
: protocols::jd2::RECONMPIJobDistributor
- go_hardcoded()
: protocols::jd2::RECONMPIJobDistributor
- good()
: utility::io::icstream
, utility::io::irstream
, utility::io::izstream
, utility::io::ocstream
, utility::io::orstream
, utility::io::ozstream
- good_node_pairs
: calculation_data_for_one_block_pair
- gpu2cpu()
: CL
- gradii
: TCDock
- graft_match()
: HbondZinc
, HbondZincBackbone
- GraftDesignCDRs()
: GraftDesignCDRs
- GraftTester()
: myspace::GraftTester
- grandparent
: numeric::expression_parser::BooleanExpressionCreator
- Graph
: ObjexxFCL::internal::ObserverGraph
, utility::graph::Graph
- graph_
: AtomNumFilter
, ObjexxFCL::internal::ObserverGraph
, RerootEdgeSorter
, utility::graph::LowMemEdgeListConstIter
, utility::graph::LowMemEdgeListIter
- graph_size_
: utility::graph::RingDetection< Graph >
- GraphClass
: utility::graph::UEEdge< V, E >
, utility::graph::UEVertex< V, E >
- gray_target()
: utility::graph::null_bfs_prune_visitor
, utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >
- GreaterThanConstraint()
: basic::database::schema_generator::GreaterThanConstraint
- greedy_revert_unsats()
: CrystDesign
- Green
: basic::Tracer
, basic::TracerImpl
- grid_
: CrystFFTDock
- grid_atoms()
: numeric::geometry::hashing::xyzStripeHash
, numeric::geometry::hashing::xyzStripeHashWithMeta< T >
- grid_atoms_
: numeric::geometry::hashing::xyzStripeHashWithMeta< T >
- grid_balls_
: numeric::geometry::hashing::xyzStripeHash
- grid_resolution_
: numeric::geometry::hashing::MinimalClashHash
- grid_size()
: numeric::geometry::hashing::xyzStripeHash
, numeric::geometry::hashing::xyzStripeHashWithMeta< T >
, numeric::interpolation::InterpolatedPotential< N >
- grid_size2()
: numeric::geometry::hashing::xyzStripeHash
- grid_size2_
: numeric::geometry::hashing::xyzStripeHash
, numeric::geometry::hashing::xyzStripeHashWithMeta< T >
- grid_size_
: numeric::geometry::hashing::xyzStripeHash
, numeric::geometry::hashing::xyzStripeHashWithMeta< T >
, numeric::interpolation::InterpolatedPotential< N >
- grid_stripe()
: numeric::geometry::hashing::xyzStripeHash
, numeric::geometry::hashing::xyzStripeHashWithMeta< T >
- grid_stripe_
: numeric::geometry::hashing::xyzStripeHash
, numeric::geometry::hashing::xyzStripeHashWithMeta< T >
- gridpoints_
: numeric::interpolation::InterpolatedPotential< N >
- grids_
: basic::sampling::orientations::QuaternionGridManager
- gridsearch_rollmove_angles()
: zinc1_homodimer_design
- gridsearch_rollmove_angles_
: zinc1_homodimer_design
- gridsearch_symmetric_alignments()
: zinc2_homodimer_setup
- GridWeights()
: GridWeights
- grisu_pow10_exponents
: detail::basic_data< T >
- grisu_pow10_significands
: detail::basic_data< T >
- group
: options_class.Option
- group_name()
: utility::tag::XMLSchemaModelGroup
- group_name_
: utility::tag::XMLSchemaModelGroup
- grow()
: basic_memory_buffer< T, SIZE, Allocator >
, detail::buffer< T >
, detail::counting_buffer< T >
, detail::iterator_buffer< OutputIt, T, Traits >
, detail::iterator_buffer< std::back_insert_iterator< Container >, enable_if_t< is_contiguous< Container >::value, typename Container::value_type > >
, detail::iterator_buffer< T *, T >
- grp
: CST
- gscore
: TCDock
- gsize
: xyzStripeHashWithMeta
- gstripe
: xyzStripeHashWithMeta
- GT_Expression()
: numeric::expression_parser::GT_Expression
- GTE_Expression()
: numeric::expression_parser::GTE_Expression
- gtol
: numeric::nls::lm_control_struct
- GTPase_cyd_
: UBQ_GTPase_disulfide_Mover
- guarantee_no_DNA
: erraser_option.erraser_option
- gun
: GunnTest
- GunnTest()
: GunnTest
- gxl
: IsctFast
- gxu
: IsctFast
- gyl
: IsctFast
- gyu
: IsctFast
- GZIP
: utility::io::izstream
, utility::io::ozstream
- gzipped()
: utility::io::icstream
, utility::io::irstream
, utility::io::izstream
, utility::io::ocstream
, utility::io::orstream
, utility::io::ozstream
- gzl
: IsctFast
- gzu
: IsctFast