Here is a list of all class members with links to the classes they belong to:

- p -

• P : Link
• p : Solver , svm_parameter
• P0 : numeric::xyzTransform< T >::Line
• p1 : numeric::fourier::SHT
• P1 : numeric::xyzTransform< T >::Line
• p_ : numeric::ColsPointer< T > , numeric::geometry::hashing::xyzStripeHash::iter_base< C > , numeric::geometry::hashing::xyzStripeHashWithMeta< T >::iter_base< C > , numeric::RowsPointer< T >
• pack_first : MinPackMin
• pack_first_ : MinPackMinMover
• pack_mover : DesignBenchmark , JDtestmover
• pack_rotamers_ : CenRotDockingMover , SmoothFragRepackMover
• pack_rotamers_mover() : HemeBindingMover
• pack_rotamers_mover_ : HemeBindingMover
• pack_sidechains() : MinPackMin
• package() : utility::Version
• packer_ : DockGlycansProtocol , GlycomutagenesisProtocol , protocols::jd2::RECONMPIJobDistributor
• packer_neighbor_graph_ : InteractionGraphPerformanceBenchmark
• Packing_energies() : Packing_energies
• PackingAngle() : PackingAngle
• packmover_ : MoveThenFixHMin
• packstat_ : Features
• padding : detail::write_int_data< Char > , utility::io::TarFileHeader
• pages : job_manager.DatabaseWindow
• paintEvent() : MainWindow
• paintGL() : MainWindow , ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• pair_ : utility::json_spirit::Json_grammer< Value_type, Iter_type >::definition< ScannerT >
• Pair_impl() : utility::json_spirit::Pair_impl< Config >
• pair_query() : pyrosetta.protocols.structure_search.StructureSearchManager
• pair_scorefxn_ : zinc1_homodimer_design
• Pair_type : utility::json_spirit::Config_map< String > , utility::json_spirit::Config_vector< String >
• PairDistance() : PairDistance
• Pairing : ThisApplication
• PairScore() : PairScore
• param : svm_model
• parameter_to_str() : pyrosetta.tests.distributed.cluster.test_smoke.GeneratorTest
• params_file() : ui::ui_protocols::helical_bundle::HelicalBundleDialogueWidget
• parent : basic::datacache::WriteableCacheableDataRegistrator< T >
• Parent : basic::MemTracerImpl
• parent : basic::resource_manager::ResourceLoaderRegistrator< T > , basic::resource_manager::ResourceLocatorRegistrator< T > , basic::resource_manager::ResourceManagerRegistrator< T > , HECTAllMover , HECTUBQMover
• Parent : InjectorMover
• parent : Mutate1Randomizer , MyCI1B , numeric::ClusteringTreeNode , numeric::DietNode< T >::split_tuple , numeric::expression_parser::BooleanExpressionCreator , numeric::interpolation::spline::PolycubicSpline< N > , numeric::interpolation::spline::PolycubicSpline< 1 > , numeric::interpolation::spline::PolycubicSpline< 2 > , numeric::kdtree::KDNode , numeric::MathNTensor< T, N > , SimpleDGBindAggregateFunction , SphereNode , ui::network::BowmanModel , ui::task::Node , ui::task::PNode , ui::task::ProjectModel , ui::util::TreeNodeModel< T >::Node , ui::util::TreeNodeModel< T > , UniformPerturber , utility::file::PathName , utility::graph::Digraph , utility::graph::DS_Node , utility::graph::Graph , utility::subset_mapping
• parent_ : basic::datacache::HierarchicalDataMap , numeric::ClusteringTreeNode , numeric::kdtree::KDNode , ui::task::Node , utility::tag::XMLSchemaRepeatableCTNode
• parents_ : PathFinder , SphereNode
• parentTag_ : utility::tag::Tag
• parse() : detail::fallback_formatter< T, Char, enable_if_t< is_streamable< T, Char >::value > > , dynamic_formatter< Char > , formatter< bytes > , formatter< detail::bigint > , formatter< std::chrono::duration< Rep, Period >, Char > , formatter< std::tm, Char > , formatter< T, Char, enable_if_t< detail::type_constant< T, Char >::value !=detail::type::custom_type > > , formatter< T, Char, enable_if_t< fmt::is_range< T, Char >::value &&(has_formatter< detail::value_type< T >, format_context >::value||detail::has_fallback_formatter< detail::value_type< T >, format_context >::value) > > , formatter< tuple_arg_join< Char, T... >, Char > , formatter< TupleT, Char, enable_if_t< fmt::is_tuple_like< TupleT >::value > > , formatting_base< Char > , numeric::expression_parser::ArithmeticASTAndClause , numeric::expression_parser::ArithmeticASTExpression , numeric::expression_parser::ArithmeticASTFactor , numeric::expression_parser::ArithmeticASTFunction , numeric::expression_parser::ArithmeticASTOrClause , numeric::expression_parser::ArithmeticASTRestAndClause , numeric::expression_parser::ArithmeticASTRestExpression , numeric::expression_parser::ArithmeticASTRestOrClause , numeric::expression_parser::ArithmeticASTRestTerm , numeric::expression_parser::ArithmeticASTTerm , numeric::expression_parser::ArithmeticASTValue , printf_formatter< T >
• parse_authors() : basic::citation_manager::Citation
• parse_config_file() : ConstraintConfig
• parse_context() : basic_printf_context< OutputIt, Char > , detail::custom_value< Context > , detail::format_handler< OutputIt, Char, Context >
• parse_context_ : detail::format_string_compiler< Char, PartHandler > , detail::specs_handler< ParseContext, Context >
• parse_context_type : basic_format_context< OutputIt, Char > , basic_printf_context< OutputIt, Char > , detail::format_string_checker< Char, ErrorHandler, Args >
• parse_ctx_ : basic_printf_context< OutputIt, Char > , detail::arg_formatter< OutputIt, Char > , detail::custom_formatter< Context >
• parse_flags() : basic_printf_context< OutputIt, Char >
• parse_func : detail::format_string_checker< Char, ErrorHandler, Args >
• parse_funcs_ : detail::format_string_checker< Char, ErrorHandler, Args >
• parse_header() : basic_printf_context< OutputIt, Char >
• parse_job_definition_tags() : FixbbJobQueen
• parse_my_tag() : basic::resource_manager::locator::DatabaseResourceLocator , basic::resource_manager::locator::FileListResourceLocator , basic::resource_manager::locator::FileSystemResourceLocator , basic::resource_manager::locator::NullResourceLocator , basic::resource_manager::ResourceLocator , ChiMover , LigChiMover , protocols::antibody::AntibodyInfoRMOptions
• parse_options() : HECTMover
• parse_residues() : ConstraintConfig
• parse_sequence() : ConstraintConfig
• parse_sfxns_and_taskops() : FixbbJobQueen
• parse_strand_ids() : ExposedStrandMover
• parse_string_entry() : basic::citation_manager::Citation
• parse_year() : basic::citation_manager::Citation
• parsed_protocol() : pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask
• parseFileSize() : utility::io::TarParser
• parser() : numeric::CalculatorParser , pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask
• parser_ : numeric::CalculatorParser
• part : detail::format_string_compiler< Char, PartHandler >
• part_ : detail::format_string_compiler< Char, PartHandler >
• part_kind : detail::format_part< Char >
• particles_ : utility::tag::XMLSchemaModelGroup
• partner1_res_ : TwoChainInterface , TwoChainTenANeighbors
• partner2_res_ : TwoChainInterface , TwoChainTenANeighbors
• partner_ : MPInterfaceStatistics
• partner_info_ : abbinding , PhDocking
• partners_ : MPInterfaceStatistics
• partners_from_info() : abbinding
• parts() : detail::compiled_format_base< S, typename > , detail::compiled_format_base< S, enable_if_t< is_compile_string< S >::value > >
• parts_container : detail::compiled_format_base< S, typename > , detail::compiled_format_base< S, enable_if_t< is_compile_string< S >::value > >
• passed_filts : CrystRelax
• passkey : pyrosetta.distributed.cluster.logging_listeners.SocketListener
• password : ui::config::UserCredentials
• patch : pyrosetta.distributed.tasks.score.ScorePoseTask
• path : arls_impl.DockingFile , ui::task::FileTableModel::Row , utility::file::FileName , utility::file::PathName
• path_ : PathFinder , utility::file::FileName , utility::file::PathName
• path_vectors_ : utility::options::OptionCollection
• PathArgument() : ui::network::PathArgument
• PathFinder() : PathFinder
• pathmap_ : utility::graph::RingEdgeAnnotationVisitor< Graph, EdgeMap, PathMap >
• PathName() : utility::file::PathName , utility::options::PathOption , utility::options::PathVectorOption
• PathologicalKinematicPerturber() : PathologicalKinematicPerturber
• PathOption() : utility::options::PathOption
• PathOptionKey() : utility::options::PathOptionKey
• Paths : utility::options::OptionCollection
• paths_ : utility::graph::RingDetection< Graph > , utility::options::OptionCollection
• PathVectorOption() : utility::options::PathVectorOption
• PathVectorOptionKey() : utility::options::PathVectorOptionKey
• PathVectors : utility::options::OptionCollection
• PausableSignalHub() : utility::signals::PausableSignalHub< ReturnType, Signal >
• pause() : ui::network::Bowman , utility::signals::PausableSignalHub< ReturnType, Signal >
• pausing() : utility::signals::PausableSignalHub< ReturnType, Signal >
• pausing_ : utility::signals::PausableSignalHub< ReturnType, Signal >
• payload_ : utility::VBWrapper< T >
• pca_ : protocols::abinitio::JumpSpecificAbrelax , protocols::abinitio::PcaEvaluator
• PcaEvaluator() : protocols::abinitio::PcaEvaluator
• pdb : DisulfEpos , enumerate_junctions.Component , enumerate_junctions.DHR , enumerate_junctions.Junction , HelixHit
• pdb_chain_ : HDmakerMover
• pdb_chain_no_ : PhProtocol
• pdb_file_name_ : abbinding , PhDocking , PhProtocol
• pdb_from_level() : SphereSample
• pdb_info : pyrosetta.bindings.pose.ResidueLabelAccessor
• PDB_IOBenchmark() : PDB_IOBenchmark
• pdb_name : pyrosetta.toolbox.py_jobdistributor.PyJobDistributor
• pdb_path : SamplingManager
• pdb_posA_ : PairScore
• pdb_posB_ : PairScore
• pdb_res_nos_ : PhProtocol
• pdb_seq_pos_ : Features
• pdb_string_ : PDB_IOBenchmark
• pdbchain : HelixHit
• pdbline() : pdbline
• pdbname : myspace::InputData , Spacegroup
• pdbname_ : zinc1_homodimer_design , ZincMinimize
• pdbname_base_ : zinc1_homodimer_design , zinc2_homodimer_design
• pdbres : HelixHit
• pdbres1 : DisulfEpos
• pdbres2 : DisulfEpos
• pdbstrings : pyrosetta.distributed.viewer.core.Viewer
• pddf_score_ : PrintPDDF
• peek() : utility::io::icstream , utility::io::irstream , utility::io::izstream
• pep_pos : pep_coord_cst
• PepMinMover() : PepMinMover
• PeptiodMovieMover() : PeptiodMovieMover
• PeptoidDesignMover() : PeptoidDesignMover
• PeptoidDihedralGrabber() : PeptoidDihedralGrabber
• PeptoidRotamerRecoverer() : PeptoidRotamerRecoverer
• per_residue_clash_metric : pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor
• per_residue_probabilities() : pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor
• per_residue_real() : pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor
• per_residue_string() : pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor
• PerformanceBenchmark() : PerformanceBenchmark
• period_certification() : numeric::random::mt19937_RG
• periodic() : numeric::interpolation::Histogram< X, Y >
• periodic_ : numeric::interpolation::Histogram< X, Y > , numeric::interpolation::InterpolatedPotential< N >
• periodic_range() : JDmover
• perlin_noise_multiplier_ : SimulateCryoMover
• perlin_noise_offset_ : SimulateCryoMover
• Permute() : basic::sampling::orientations::Permute
• perspectiveGL() : MainWindow
• pert_scales_ : myspace::Scheduler
• perturb_bundle_ : MainWindow
• perturb_chain() : NullKinematicPerturber , PathologicalKinematicPerturber , UniformPerturber
• perturber_ : ClosureMover , DockGlycansProtocol
• perturber_type() : NullKinematicPerturber , PathologicalKinematicPerturber , UniformPerturber
• Perturbers1() : Perturbers1
• Perturbers2() : Perturbers2
• perturbers_ : Perturbers1 , Perturbers2
• PerturbStruct() : PerturbStruct
• pH_mode_ : PhDocking
• pH_neighbor_pack_ : PhProtocol
• pH_prepack_ : PhProtocol
• pH_relax_ : PhProtocol
• PhDocking() : PhDocking
• phi() : Mode , myspace::DataStruct , myspace::InputData , numeric::EulerAngles< T > , numeric::sphericalVector< T >
• phi_ : MakeCanonicalHelix , numeric::sphericalVector< T >
• phi_degrees() : numeric::EulerAngles< T >
• phi_radians() : numeric::EulerAngles< T >
• phibin_ : ScoreFragInfo
• phid1 : Hit
• phid2 : Hit
• PhProtocol() : PhProtocol
• pi() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_2() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_2_over_3() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_3_over_4() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_over_180() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_over_2() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_over_3() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_over_4() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pick_consensus_AA() : protocols::jd2::RECONMPIJobDistributor
• pick_fragments() : SwapElementsMover1 , SwapElementsMover2
• pick_frags() : ThisApplication
• pick_hashing_res() : myspace::Scheduler
• pick_random_chunk() : apps::pilot::MultiTemplateAlignChunkMover
• pick_random_template() : apps::pilot::MultiTemplateAlignChunkMover , ChallengeMover
• pick_sequence() : ConstraintConfig
• pick_sse() : PickSSE
• PickBAB() : PickBAB
• picker_ : FragmentBasedDesign
• picker_rank : FragID
• picking_rounds_ : protocols::antibody::task_operations::AddFrameworkProfilesOperation
• pickled_pose : pyrosetta.distributed.packed_pose.core.PackedPose
• PickSSE() : PickSSE
• pimpl_ : utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLValidator
• ping_interval : ui::network::B
• pivot() : numeric::MathMatrix< T >
• pivot_picker_ : ClosureMover
• pivots_ : BBG_Cyclic_Mover
• pixel_size_ : SimulateCryoMover
• pka_all_ : PhProtocol
• pka_rad_ : PhProtocol
• pka_value_ : PhProtocol
• place_c() : BruteFunGroupTK , FunGroupTK , KinFunGroupTK
• place_n() : BruteFunGroupTK , BruteRotSel , FunGroupTK , KinFunGroupTK , KinRotSel , RotSel
• platform_ : CL
• pleating_ : protocols::jumping::LibraryJumpSetup , protocols::jumping::SpecificJumpSetup
• PNode() : ui::task::PNode
• pnt : IsctFast
• POD2() : POD2
• POD3() : POD3
• POD4() : POD4
• POD5() : POD5
• POD6() : POD6
• Point : numeric::alignment::QCPKernel< Real > , numeric::BodyPosition< T >
• point() : numeric::HomogeneousTransform< T >
• Point() : numeric::interpolation::spline::Point
• point() : numeric::kdtree::KDNode
• point_clicked() : ui::viewers::ScoreFileView
• pointer : detail::counting_iterator , detail::truncating_iterator_base< OutputIt > , detail::value< Context >
• Pointer : numeric::BodyPosition< T >
• pointer : numeric::BodyPosition< T > , numeric::geometry::hashing::xyzStripeHash::iter_base< C >
• Pointer : numeric::Quaternion< T >
• pointer : numeric::Quaternion< T >
• Pointer : numeric::sphericalVector< T >
• pointer : numeric::sphericalVector< T >
• Pointer : numeric::xyzMatrix< T >
• pointer : numeric::xyzMatrix< T >
• Pointer : numeric::xyzTriple< T >
• pointer : numeric::xyzTriple< T >
• Pointer : numeric::xyzVector< T >
• pointer : numeric::xyzVector< T >
• Pointer : ObjexxFCL::CArray< T >
• pointer : ObjexxFCL::CArray< T > , ObjexxFCL::CArrayP< T >
• Pointer : ObjexxFCL::CArrayP< T >
• pointer : ObjexxFCL::Chunk< T >
• Pointer : ObjexxFCL::Chunk< T >
• pointer : ObjexxFCL::ChunkVector< T >
• Pointer : ObjexxFCL::ChunkVector< T >
• pointer : ObjexxFCL::FArray1< T >
• Pointer : ObjexxFCL::FArray1< T > , ObjexxFCL::FArray1A< T >
• pointer : ObjexxFCL::FArray1A< T >
• Pointer : ObjexxFCL::FArray1D< T >
• pointer : ObjexxFCL::FArray1D< T >
• Pointer : ObjexxFCL::FArray1P< T >
• pointer : ObjexxFCL::FArray1P< T >
• Pointer : ObjexxFCL::FArray2< T >
• pointer : ObjexxFCL::FArray2< T >
• Pointer : ObjexxFCL::FArray2A< T >
• pointer : ObjexxFCL::FArray2A< T >
• Pointer : ObjexxFCL::FArray2D< T >
• pointer : ObjexxFCL::FArray2D< T >
• Pointer : ObjexxFCL::FArray2P< T >
• pointer : ObjexxFCL::FArray2P< T >
• Pointer : ObjexxFCL::FArray3< T >
• pointer : ObjexxFCL::FArray3< T > , ObjexxFCL::FArray3A< T >
• Pointer : ObjexxFCL::FArray3A< T >
• pointer : ObjexxFCL::FArray3D< T >
• Pointer : ObjexxFCL::FArray3D< T >
• pointer : ObjexxFCL::FArray3P< T >
• Pointer : ObjexxFCL::FArray3P< T >
• pointer : ObjexxFCL::FArray4< T >
• Pointer : ObjexxFCL::FArray4< T > , ObjexxFCL::FArray4A< T >
• pointer : ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T >
• Pointer : ObjexxFCL::FArray4D< T >
• pointer : ObjexxFCL::FArray4P< T >
• Pointer : ObjexxFCL::FArray4P< T >
• pointer : ObjexxFCL::FArray5< T >
• Pointer : ObjexxFCL::FArray5< T >
• pointer : ObjexxFCL::FArray5A< T >
• Pointer : ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T >
• pointer : ObjexxFCL::FArray5D< T >
• Pointer : ObjexxFCL::FArray5P< T >
• pointer : ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6< T >
• Pointer : ObjexxFCL::FArray6< T >
• pointer : ObjexxFCL::FArray6A< T >
• Pointer : ObjexxFCL::FArray6A< T >
• pointer : ObjexxFCL::FArray6D< T >
• Pointer : ObjexxFCL::FArray6D< T >
• pointer : ObjexxFCL::FArray6P< T >
• Pointer : ObjexxFCL::FArray6P< T > , ObjexxFCL::FArray< T >
• pointer : ObjexxFCL::FArray< T >
• Pointer : ObjexxFCL::FArraySection< T >
• pointer : ObjexxFCL::FArraySection< T > , ObjexxFCL::KeyFArray1D< T >
• Pointer : ObjexxFCL::KeyFArray1D< T >
• pointer : ObjexxFCL::KeyFArray2D< T >
• Pointer : ObjexxFCL::KeyFArray2D< T >
• pointer : ObjexxFCL::KeyFArray3D< T >
• Pointer : ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T >
• pointer : ObjexxFCL::KeyFArray4D< T >
• Pointer : ObjexxFCL::KeyFArray5D< T >
• pointer : ObjexxFCL::KeyFArray5D< T >
• Pointer : ObjexxFCL::KeyFArray6D< T >
• pointer : ObjexxFCL::KeyFArray6D< T >
• Pointer : utility::BitSet< B >
• pointer : utility::BitSet< B >
• Pointer : utility::BitVector< B >
• pointer : utility::BitVector< B > , utility::DereferenceIterator< Container >
• Pointer : utility::keys::ClassKeyMap< K, T, C >
• pointer : utility::keys::ClassKeyMap< K, T, C >
• Pointer : utility::keys::ClassKeyVector< K, T, C >
• pointer : utility::keys::ClassKeyVector< K, T, C >
• Pointer : utility::keys::KeyMapTraits< K, T >
• pointer : utility::keys::KeyMapTraits< K, T > , utility::keys::KeySetTraits< K >
• Pointer : utility::keys::KeySetTraits< K > , utility::keys::KeyVector< K, T >
• pointer : utility::keys::KeyVector< K, T >
• Pointer : utility::keys::KeyVectorTraits< K >
• pointer : utility::keys::KeyVectorTraits< K >
• Pointer : utility::keys::SmallKeyMap< K, T >
• pointer : utility::keys::SmallKeyMap< K, T >
• Pointer : utility::keys::SmallKeyVector< K, T >
• pointer : utility::keys::SmallKeyVector< K, T >
• Pointer : utility::RawType< T > , utility::RawType< T & > , utility::RawType< T * >
• pointer : utility::vector0< T, A >
• Pointer : utility::vector0< T, A >
• pointer : utility::vector0< bool, A >
• Pointer : utility::vector0< bool, A >
• pointer : utility::vector1< T, A >
• Pointer : utility::vector1< T, A >
• pointer : utility::vector1< bool, A >
• Pointer : utility::vector1< bool, A > , utility::vectorL< L, T, A >
• pointer : utility::vectorL< L, T, A > , utility::vectorL< L, bool, A >
• Pointer : utility::vectorL< L, bool, A >
• pointer_type : utility::pointer::DeepCopyOP< T >
• PointerKeyLess : utility::keys::Key
• Pointers_and_References() : Pointers_and_References
• pointGroupHit() : pointGroupHit
• PointPosition : numeric::geometry::BoundingBox< T >
• points_ : ClashCheck , MatchSet , numeric::interpolation::spline::SplineGenerator
• polar_only : pyrosetta.distributed.viewer.modules.setHydrogens
• poll() : job_manager.CommandRunner
• poll_frequency() : ServerInfo
• poll_frequency_ : ServerInfo
• poll_items : ui::network::B
• PolycubicSpline() : numeric::interpolation::spline::PolycubicSpline< N > , numeric::interpolation::spline::PolycubicSpline< 1 > , numeric::interpolation::spline::PolycubicSpline< 2 >
• PolycubicSplineBase() : numeric::interpolation::spline::PolycubicSplineBase
• Polynomial_1d() : numeric::Polynomial_1d
• polynomial_name_ : numeric::Polynomial_1d
• pool_ : AssignClusterToolMover
• pop() : InterfaceHitDatabase , job_manager.StatusWindow , numeric::expression_parser::TokenSet , ObjexxFCL::internal::ObserverGraph , utility::graph::NegSpaceElement< T > , utility::vectorL< L, T, A >
• pop_back() : ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< T > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyVector< K, T >
• pop_masked_key() : pyrosetta.distributed.cluster.logging_handlers.MsgpackHmacSocketHandler , pyrosetta.distributed.cluster.logging_handlers.MultiSocketHandler
• pop_next_message_for_node_of_type() : utility::SimulateMPIData
• pop_next_message_of_type() : utility::SimulateMPIData
• pop_node() : utility::tag::XMLErrorHandler
• pop_status() : job_manager.AppWindow
• populate_doi_rosetta_citation_map() : basic::citation_manager::CitationManager
• pore_radius_ : Sasa
• porphyrin_position_ : HemeReplace
• pos : FragID
• pos2frags : FragmentAssemblyMover
• pos_ : FragID , FunGroupTK , RotSel
• pos_in_history_queue() : utility::recent_history_queue
• pos_in_nodes_edge_list_ : utility::graph::DirectedEdge , utility::graph::Edge
• pos_in_owners_edge_list_ : utility::graph::DirectedEdge , utility::graph::Edge
• pos_to_fragcands_ : FragMonteCarlo
• posA_ : PairScore
• posB_ : PairScore
• pose : apps::pilot::KicSandbox
• Pose : BUNS_Output , DetectSymmetry , FragmentBasedDesign
• pose : HIT , MatchBase , MatchLig , PDB_IOBenchmark , PoseAndData , PoseWrap , pyrosetta.bindings.pose.PoseResidueAccessor , pyrosetta.bindings.pose.PoseResidueLabelAccessor , pyrosetta.bindings.pose.PoseScoreAccessor , pyrosetta.bindings.scores.base.PoseCacheAccessorBase , pyrosetta.distributed.packed_pose.core.PackedPose , pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor , SamplingManager , ScoreBenchmark , ShearMoverBenchmark , SlideTask , SmallMoverBenchmark
• Pose : SwapElementsMover1 , SwapElementsMover2
• pose : test.T010_LoadPDB.LoadPDBTest , test.T300_PyJobDistributor.TestPyJobDistributor , ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget , WorkDat
• pose0_ : HBondedPairIterator
• pose_ : ClashCheck , CoupledFunc , Domain , FastRelaxPerformanceBenchmark , FragInfo , FunGroupTK , HBondedPairIterator , InteractionGraphPerformanceBenchmark , MainWindow , NBuriedUnsatsCalcultor , PosePyObserver , RotSel , ScoreEachBenchmark , sidechain_cst_3.Residue , SlideTask , ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• pose_draw_widget_ : MainWindow
• pose_filename_ : ZincMinimize
• pose_from_job() : InterfaceDDGBindJobInputter
• pose_name() : HBondReporter
• pose_num() : sidechain_cst_3.Residue
• pose_s2_ : Results_Keeper
• pose_s_ : Results_Keeper
• pose_tags_ : SpartaSuperDeviationMover , SuperDeviationMover
• pose_to_xyz() : SimulateCryoMover
• PoseEditor() : ui::widgets::PoseEditor
• posename_ : CalcsTestMover
• PoseOP : DetectSymmetry , FragmentBasedDesign , SwapElementsMover1 , SwapElementsMover2
• PosePyObserver() : PosePyObserver
• poses : pyrosetta.distributed.viewer.core.Viewer , pyrosetta.io.silent_file_map.SilentFileMap
• poses_ : MPDomainAssembly , PoseWrap , RTminOptMultifunc
• PoseWrap() : PoseWrap
• positive() : ObjexxFCL::DynamicIndexRange , ObjexxFCL::IndexRange
• positive_value() : ObjexxFCL::IndexRange
• posn_begin_ : utility::json_spirit::Stream_reader_thrower< Istream_type, Value_type >
• posn_end_ : utility::json_spirit::Stream_reader_thrower< Istream_type, Value_type >
• Posn_iter_t : utility::json_spirit::Stream_reader_thrower< Istream_type, Value_type >
• post_ : MyRotMover , MyTransMover
• post_data_ : ui::task::NetworkCall
• post_submit() : ui::task::TaskSyncer_NodeStrategy
• postfix : formatting_range< Char, Enable > , formatting_tuple< Char, Enable >
• postfrac_ : MyRotMover , MyTransMover
• postgres : utility::sql_database::DatabaseMode
• PostMessage_from_main_thread() : nacl_rosetta::RosettaInstance
• PostStringToBrowser() : nacl_rosetta::RosettaInstance
• powers_of_10_64 : detail::basic_data< T >
• powers_of_5_64 : detail::basic_data< T >
• pq_schema_ : utility::sql_database::session
• pre_process_ : abbinding
• pre_trans_ : Results_Keeper
• precision() : basic::Tracer , basic_format_specs< Char > , detail::chrono_formatter< FormatContext, OutputIt, Rep, Period > , detail::fixed_handler , detail::float_specs , formatter< std::chrono::duration< Rep, Period >, Char > , numeric::IOTraits< T > , numeric::IOTraits< double > , numeric::IOTraits< float > , numeric::IOTraits< int > , numeric::IOTraits< long double > , numeric::IOTraits< long int > , numeric::IOTraits< short int > , numeric::IOTraits< unsigned int > , numeric::IOTraits< unsigned long int > , numeric::IOTraits< unsigned short int > , ObjexxFCL::TypeTraits< T > , ObjexxFCL::TypeTraits< double > , ObjexxFCL::TypeTraits< float > , ObjexxFCL::TypeTraits< int > , ObjexxFCL::TypeTraits< long double > , ObjexxFCL::TypeTraits< long int > , ObjexxFCL::TypeTraits< short int > , ObjexxFCL::TypeTraits< unsigned int > , ObjexxFCL::TypeTraits< unsigned long int > , ObjexxFCL::TypeTraits< unsigned short int >
• precision_adapter() : detail::precision_adapter< SpecHandler, Char >
• precision_checker() : detail::precision_checker< ErrorHandler >
• precision_ref : detail::dynamic_format_specs< Char > , formatter< std::chrono::duration< Rep, Period >, Char >
• precompute_intra() : TCDock
• precompute_pml_ : numeric::fourier::SHT
• precompute_pml_trans_ : numeric::fourier::SHT
• precompute_wig_trans_ : numeric::fourier::SHT
• predicate_cmp_filename() : utility::predicate_cmp_filename
• predict() : utility::libsvm::Svm_rosetta
• predict_probability() : utility::libsvm::Svm_rosetta
• predicted_distance() : DistancePrediction
• predicted_distance_ : DistancePrediction
• prefix : binder::Config , detail::int_writer< OutputIt, Char, UInt > , formatting_range< Char, Enable > , formatting_tuple< Char, Enable > , pyrosetta.distributed.utility.log.ProgressLogger , utility::io::TarFileHeader , utility::options::OptionCollection
• prefix_code() : binder::Binder , binder::ClassBinder
• prefix_code_ : binder::ClassBinder
• prefix_for_static_member_functions() : binder::Config
• prefix_for_static_member_functions_ : binder::Config
• prefix_includes_ : binder::ClassBinder
• prefix_size : detail::int_writer< OutputIt, Char, UInt >
• prepack_pose() : PhProtocol
• prepare_for_output() : utility::tag::XMLSchemaAttribute , utility::tag::XMLSchemaComplexType , utility::tag::XMLSchemaElement , utility::tag::XMLSchemaModelGroup , utility::tag::XMLSchemaRestriction , utility::tag::XMLSchemaTopLevelElement
• prepare_for_query() : numeric::coordinate_fitting::CoordinateArray_RMSD_FlatLookup< Real > , numeric::coordinate_fitting::FlatLookup< QueryType, EntryType, Real >
• prepare_rotamer_sets() : InteractionGraphPerformanceBenchmark
• prepare_scoring_function() : DockGlycansProtocol
• prepare_sequence_of_subelement_sets() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_choice_opt() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_choice_req() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_repeatable() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_single_instance_optional() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_single_instance_required() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_single_instance_required_ordered() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepend_Aform_residue() : dsRNA_grow
• prepend_channel_name() : basic::TracerImpl
• prepend_to_msg() : utility::excn::Exception
• pretty() : numeric::expression_parser::ASTPrinter
• pretty_ : numeric::expression_parser::ASTPrinter , utility::json_spirit::Generator< Value_type, Ostream_type >
• pretty_print() : CalcsTestMover
• prev : Cache::head_t , utility::list_element< T >
• prev_ : utility::list_element< T >
• preview_file() : ui::task::TaskView
• previewed_file_ : ui::task::TaskView
• previous() : utility::graph::DirectedEdgeListElement , utility::graph::EdgeListElement
• previous_ : utility::graph::DirectedEdgeListElement , utility::graph::EdgeListElement
• pri : WorkDat
• primary_authors() : basic::citation_manager::Citation
• primary_authors_ : basic::citation_manager::Citation
• primary_key_ : basic::database::schema_generator::Schema
• primary_shell_neighbors_ : HbondZinc , HbondZincBackbone
• primary_subsub : PoseWrap
• PrimaryKey() : basic::database::schema_generator::PrimaryKey
• print() : basic::database::schema_generator::Column , basic::database::schema_generator::Constraint , basic::database::schema_generator::DbBigInt , basic::database::schema_generator::DbDataType , basic::database::schema_generator::DbDouble , basic::database::schema_generator::DbInteger , basic::database::schema_generator::DbReal , basic::database::schema_generator::DbText , basic::database::schema_generator::DbTextKey , basic::database::schema_generator::DbUUID , basic::database::schema_generator::ForeignKey , basic::database::schema_generator::GreaterThanConstraint , basic::database::schema_generator::Index , basic::database::schema_generator::PrimaryKey , basic::database::schema_generator::Schema , basic::database::schema_generator::UniqueConstraint , basic::MetricValue< T >
• Print() : basic::sampling::orientations::Quaternion
• print() : basic::sampling::orientations::QuaternionGrid
• Print() : basic::sampling::orientations::QuatSet
• print() : buffered_file , enumerate_junctions.Design , enumerate_junctions.DHR , enumerate_junctions.Junction , numeric::expression_parser::TokenSet , PairScore , SequenceCoords , utility::graph::DirectedNode , utility::graph::LowMemNode , utility::graph::Node
• print_aa_statistics() : MPInterfaceStatistics
• print_channel_name : basic::TracerOptions
• print_energy() : PepMinMover
• print_error_message() : utility::options::Option
• print_features() : Features , JDmover
• print_flips() : ElecDensMinPackMinReporter
• print_hbonds() : PhDocking , PhProtocol
• print_header() : utility::io::mpi_stream::basic_mpi_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT > , utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
• print_roc_curve() : numeric::RocCurve
• print_score() : MPDomainAssembly
• print_seqs() : PrintSequenceMover
• print_sequences() : DesignGlycansProtocol
• print_sheets() : ExposedStrandMover
• print_sheets_extras() : ExposedStrandMover
• print_stats() : ConstraintStatsMover , SpartaSuperDeviationMover , SuperDeviationMover
• print_to_curr_pos() : numeric::expression_parser::TokenSet
• print_unprocessed_incoming_messages() : utility::SimulateMPI
• print_unprocessed_outgoing_messages() : utility::SimulateMPI
• print_unsat_only_ : CalcsTestMover
• print_vertices() : utility::graph::Digraph , utility::graph::Graph , utility::graph::LowMemGraph< _LMNode, _LMEdge >
• PrintEuler() : basic::sampling::orientations::Quaternion
• printf_arg_formatter() : printf_arg_formatter< OutputIt, Char >
• printf_formatter() : printf_formatter< T >
• printf_width_handler() : detail::printf_width_handler< Char >
• PrintFeatures() : PrintFeatures
• printflags : numeric::nls::lm_control_struct
• printHeader() : PairScore
• PrintPDDF() : PrintPDDF
• PrintSequenceMover() : PrintSequenceMover
• priority() : basic::TracerImpl
• priority_ : basic::Tracer , basic::Tracer::TracerProxy , basic::TracerImpl , basic::TracerImpl::TracerProxyImpl
• private_index() : utility::keys::AutoKey< O, S, C > , utility::keys::Key , utility::keys::UserKey< O, S, C > , utility::keys::VariantKey< K >
• private_int_not_binded : Consts
• private_static_not_binded : Consts
• prob : myspace::DataStruct
• prob_br_ : HemeBindingMover
• probA : svm_model
• probability() : DisulfideBondEnergy , svm_parameter
• probB : svm_model
• probe_radius_ : CalcsTestMover
• process : job_manager.CommandRunner
• process_decoy() : protocols::abinitio::JumpSpecificAbrelax
• process_fragfile() : DockFragmentsMover
• process_packet() : PyMOL-Rosetta-relay-client.PR_PyMOLServer , PyMOL-RosettaServer.PR_PyMOLServer , pyrosetta.PyMOLRosettaServer.PR_PyMOLServer
• processed() : utility::SimulateMPIMessage
• processed_ : utility::SimulateMPIMessage
• processes : pyrosetta.distributed.cluster.core.PyRosettaCluster
• product : numeric::Quaternion< T > , numeric::xyzMatrix< T > , numeric::xyzVector< T >
• Product : utility::factory::Factory< P > , utility::factory::Registrant< P >
• ProductFactory : utility::factory::Registrant< P >
• ProductP : utility::factory::Factory< P >
• ProfileThis() : basic::ProfileThis
• program_ : CL
• progress : job_manager.CommandRunner , ui::task::Functor , ui::task::FunctorASyncSequence , ui::task::FunctorSequence
• progress_data_received() : ui::network::Bowman , ui::network::BowmanThread , ui::widgets::PoseEditor
• Project() : ui::task::Project
• project() : ui::task::ProjectModel , ui::task::Task
• Project::add_task : ui::task::Task
• Project::assign_ownership : ui::task::Task
• Project::erase : ui::task::Task
• project_ : ui::task::ProjectModel , ui::task::ProjectView , ui::task::Task
• project_along_axis() : CrystFFTDock
• project_name : pyrosetta.distributed.cluster.core.PyRosettaCluster
• project_normal() : numeric::xyzTriple< T > , numeric::xyzVector< T >
• project_parallel() : numeric::xyzTriple< T > , numeric::xyzVector< T >
• projected_normal() : numeric::xyzTriple< T > , numeric::xyzVector< T >
• projected_parallel() : numeric::xyzTriple< T > , numeric::xyzVector< T >
• projection_matrix : numeric::xyzMatrix< T > , numeric::xyzVector< T >
• ProjectModel() : ui::task::ProjectModel
• ProjectView() : ui::task::ProjectView
• propogate : enumerate_junctions.Component
• protein : arls_impl.DockingCase , schema.Job
• protein_pack_reps : mutant_modeler.MutantModeler
• protocol : apps::pilot::KicSandbox
• protocol_id_ : basic::mpi::DbMoverMessageListener
• protocol_lock : pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask , pyrosetta.distributed.tasks.score.ScorePoseTask
• Protocol_MolecularDynamics() : Protocol_MolecularDynamics
• protocol_name : pyrosetta.distributed.cluster.logging_filters.SetProtocolNameFilter
• protocol_xml : pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask
• protocols_key : pyrosetta.distributed.cluster.core.PyRosettaCluster
• provide_xml_schema() : basic::resource_manager::locator::DatabaseResourceLocator , basic::resource_manager::locator::DatabaseResourceLocatorCreator , basic::resource_manager::locator::FileListResourceLocator , basic::resource_manager::locator::FileListResourceLocatorCreator , basic::resource_manager::locator::FileSystemResourceLocator , basic::resource_manager::locator::FileSystemResourceLocatorCreator , basic::resource_manager::locator::NullResourceLocator , basic::resource_manager::locator::NullResourceLocatorCreator , basic::resource_manager::ResourceLoaderCreator , basic::resource_manager::ResourceLocatorCreator
• Proxy() : ObjexxFCL::CArrayP< T >
• proxy() : ObjexxFCL::CArrayP< T > , ObjexxFCL::FArray< T >
• proxy_FArray : ObjexxFCL::FArray1< T > , ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T >
• ProxySentinel : ObjexxFCL::FArray1< T > , ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::FArray< T > , ObjexxFCL::internal::ProxySentinel
• pseudoCA() : pseudoCA
• pseudoCAbond() : pseudoCAbond
• PseudoCAMultifunc() : PseudoCAMultifunc
• pseudocountsFraction : DisulfideBondEnergy
• pseudoTrace() : pseudoTrace
• pseudoTraceRecords() : pseudoTraceRecords
• psformat64 : numeric::random::mt19937_RG
• psi() : Mode , myspace::DataStruct , myspace::InputData , numeric::EulerAngles< T >
• psi_ : MakeCanonicalHelix
• psi_degrees() : numeric::EulerAngles< T >
• psi_radians() : numeric::EulerAngles< T >
• psibin_ : ScoreFragInfo
• pt_ : numeric::kdtree::KDNode
• ptask_ : Packing_energies , SSM_energies
• ptr_ : detail::arg_formatter< OutputIt, Char > , detail::buffer< T >
• ptr_registry() : utility::factory::Factory< P >
• ptr_registry_transfer() : utility::factory::Factory< P >
• PtrRegistry : utility::factory::Factory< P >
• PTS : Link
• public_int : Consts
• public_Integral : Consts
• public_pick_fragments() : VarLengthBuildKristin
• public_release() : utility::Version
• public_static : Consts
• pure_test_p() : test.T850_SubClassing.PyOverloadTest , utility::py::OverloadTest
• pure_test_ref() : test.T850_SubClassing.PyOverloadTest , utility::py::OverloadTest
• purge_address() : pyrosetta.distributed.cluster.logging_handlers.MultiSocketHandler
• purge_all() : pyrosetta.distributed.cluster.logging_handlers.MultiSocketHandler
• push() : detail::dynamic_arg_list , job_manager.StatusWindow , ObjexxFCL::internal::ObserverGraph
• push_back() : detail::buffer< T > , dynamic_format_arg_store< Context > , numeric::IntervalSet< T > , ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< T > , ui::util::TreeNodeModel< T >::Node , utility::graph::DirectedEdgeList , utility::graph::EdgeList , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyVector< K, T > , utility::options::VectorOption_T_< K, T >
• push_front() : utility::graph::DirectedEdgeList , utility::graph::EdgeList
• push_node() : utility::tag::XMLErrorHandler
• push_status() : job_manager.AppWindow
• push_to_front_of_history_queue() : utility::recent_history_queue
• put() : utility::io::mpi_stream::basic_mpi_ostream< Elem, Tr, ElemA, ByteT, ByteAT > , utility::io::ocstream , utility::io::orstream , utility::io::ozstream , zlib_stream::basic_zip_ostream< Elem, Tr, ElemA, ByteT, ByteAT >
• put_back_from_zip_stream() : zlib_stream::basic_unzip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
• put_coordinate_constraints() : myspace::Scheduler
• put_long_as_uint32() : utility::io::mpi_stream::basic_mpi_ostream< Elem, Tr, ElemA, ByteT, ByteAT > , zlib_stream::basic_zip_ostream< Elem, Tr, ElemA, ByteT, ByteAT >
• putback() : utility::io::icstream , utility::io::irstream , utility::io::izstream
• pw_ : MyRotMover , MyTransMover
• px() : numeric::HomogeneousTransform< T > , numeric::xyzTransform< T >
• px_ : numeric::HomogeneousTransform< T >
• py() : numeric::HomogeneousTransform< T > , numeric::xyzTransform< T >
• py_ : numeric::HomogeneousTransform< T >
• pybind11_include_file() : binder::Config
• pybind11_include_file_ : binder::Config
• pymol_print_ : GlycanClashCheckMover
• pymol_selection_ : XMLprinterMover
• pyrosetta_build : pyrosetta.distributed.cluster.core.PyRosettaCluster
• pyrosetta_init_args : pyrosetta.distributed.cluster.core.PyRosettaCluster
• pythag() : basic::svd::SVD_Solver
• python_builtins : binder::Config
• pz() : numeric::HomogeneousTransform< T > , numeric::xyzTransform< T >
• pz_ : numeric::HomogeneousTransform< T >