Here is a list of all class members with links to the classes they belong to:

- s -

• s : basic::sampling::orientations::QuaternionGrid , detail::chrono_formatter< FormatContext, OutputIt, Rep, Period > , utility::py::Value
• s1 : Hit
• s1_ : ObjexxFCL::FArray2< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray6< T >
• s2 : Hit
• s2_ : ObjexxFCL::FArray3< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray6< T >
• s2d() : utility::subset_mapping
• s3_ : ObjexxFCL::FArray4< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray6< T >
• s4_ : ObjexxFCL::FArray5< T > , ObjexxFCL::FArray6< T >
• s5_ : ObjexxFCL::FArray6< T >
• s_ : Base , utility::py::Value
• s_on_jobs_tabMoved() : ui::task::TaskSubmit
• s_on_queues_finished() : ui::task::TaskSubmit
• safe_output() : basic::TracerImpl
• same() : InterfaceDDGBindInnerJob
• same_dimensions() : numeric::MathMatrix< T >
• same_edge() : utility::graph::DirectedEdge , utility::graph::Edge , utility::graph::LowMemEdge
• same_type_as_me() : numeric::interpolation::spline::CompoundInterpolator , numeric::interpolation::spline::Interpolator , numeric::interpolation::spline::SimpleInterpolator
• SameResidueTypeConstraint() : SameResidueTypeConstraint
• sameSecondary_ : PairScore
• sample() : ChallengeMover , numeric::random::DistributionSampler< T > , SphereSample
• sample1() : SphereSample
• sample2() : SphereSample
• sample3() : SphereSample
• sample4() : SphereSample
• sample5() : SphereSample
• sample6() : SphereSample
• sample7() : SphereSample
• sample_offset() : SphereSample
• sample_omega_for_pre_prolines_ : UniformPerturber
• sampler : OutputManager
• samples() : numeric::random::WeightedReservoirSampler< T >
• SampleSecondaryStructureAlignmentMover() : apps::pilot::SampleSecondaryStructureAlignmentMover
• SampleTiltProtocol() : SampleTiltProtocol
• sampling_increment_ : zinc_stats::ZincStatisticGenerator
• sampling_move : SamplingManager
• sampling_move_ : BreadthMover
• sampling_range_ : zinc_stats::ZincStatisticGenerator
• SamplingManager() : SamplingManager
• sampLoc() : numeric::fourier::SO3coeffs
• sanitize_record_arg() : pyrosetta.distributed.cluster.logging_handlers.MsgpackHmacSocketHandler
• sanitize_record_args() : pyrosetta.distributed.cluster.logging_handlers.MsgpackHmacSocketHandler
• sanity_check() : numeric::geometry::hashing::xyzStripeHash , numeric::geometry::hashing::xyzStripeHashWithMeta< T > , SphereSample
• sarray_ : ObjexxFCL::FArray1< T > , ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::FArray< T > , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T >
• Sasa() : Sasa
• Sasa_ : CalcsTestMover , sasa_qdMover
• sasa_qdMover() : sasa_qdMover
• sat_allow_ : ExposedStrandMover
• satisfaction_cutoff() : CalcsTestMover
• save() : numeric::VoxelArray< _Float, _Value >
• save_all : pyrosetta.distributed.cluster.core.PyRosettaCluster
• save_archive() : CloudArchiveManagerWrapper
• save_batchlist() : CloudArchiveManagerWrapper
• save_pose() : ui::widgets::PoseEditor
• saveState() : numeric::random::mt19937_RG , numeric::random::RandomGenerator , numeric::random::standard_RG , numeric::random::uniform_RG
• saxs_ : ComputeSAXSSpectrum
• SAXSEnergyOP : ComputeSAXSSpectrum
• sc_bb_min_mover_ : zinc1_homodimer_design
• sc_bb_move_map_ : zinc1_homodimer_design
• SC_CUT_ : CrystDesign
• sc_hbonds_ : Features
• sc_min_mover_ : zinc1_homodimer_design
• sc_move_map_ : zinc1_homodimer_design
• sc_mover : JDtestmover
• sc_prob_ : CenRotCanonicalMover
• sc_sasa_ : Features
• sc_temp_ave_ : Features
• scaffold : APDBCMover
• scaffold_name_ : HbondZincBackbone
• Scalar : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• scalar() : utility::options::OptionKey , utility::options::ScalarOptionKey , utility::options::VectorOptionKey
• ScalarOption() : utility::options::ScalarOption
• ScalarOption_T_() : utility::options::ScalarOption_T_< K, T >
• ScalarOptionKey() : utility::options::ScalarOptionKey
• scale_ : BondedRNA_Mover
• scale_diag : numeric::nls::lm_control_struct
• scaled_add() : numeric::sphericalVector< T > , numeric::xyzTriple< T > , numeric::xyzVector< T >
• scaled_assign() : numeric::sphericalVector< T > , numeric::xyzTriple< T > , numeric::xyzVector< T >
• scaled_sub() : numeric::sphericalVector< T > , numeric::xyzTriple< T > , numeric::xyzVector< T >
• scan() : A3BHbsCreatorMover , numeric::expression_parser::ArithmeticScanner
• scan_Evalue() : myspace::DataClass
• scan_Evalue_and_write() : myspace::DataClass
• scan_identifier() : numeric::expression_parser::ArithmeticScanner
• scan_literal() : numeric::expression_parser::ArithmeticScanner
• scattach_res_user : PoseWrap
• scatter_factors_ : SimulateCryoMover
• scfxn : HBondReporter
• scfxn_ : RepackCenrotMover , RescoreCenrot
• Scheduler() : myspace::Scheduler
• scheduler : pyrosetta.distributed.cluster.core.PyRosettaCluster , pyrosetta.distributed.cluster.utilities.SchedulerManager
• Schema() : basic::database::schema_generator::Schema
• schema_ : utility::tag::XMLValidatorImpl
• schema_for_resource_definition_file() : basic::resource_manager::ResourceManager
• schema_has_been_set() : utility::tag::XMLValidator , utility::tag::XMLValidatorImpl
• schema_has_been_set_ : utility::tag::XMLValidatorImpl
• schema_parser_context_ : utility::tag::XMLValidatorImpl
• schema_validator_ : utility::tag::XMLValidatorImpl
• ScMinMover() : ScMinMover
• score() : fiberHit , FragmentAssemblyMover , Hit , InterfaceHit , LMAX , numeric::RocPoint , PairScore , pointGroupHit , pseudoCA , pseudoCAbond , pseudoTrace , RMS_ScoringScheme , SameResidueTypeConstraint , schema.Trajectory , SpacegroupHit
• score_ : local_minimum , numeric::RocPoint , pseudoTrace , Results_Keeper , ScoreMover
• score_conformations() : apps::pilot::momeara::HBondConformation
• score_data_ : GlycanClashCheckMover
• score_experimental_constraints() : CapriTotalEnergy
• score_file_ : ui::viewers::ScoreFileView
• score_full_ : myspace::DataClass
• score_function() : DockGlycansProtocol , HemeBindingMover , pyrosetta.distributed.tasks.score.ScorePoseTask , SamplingManager
• score_function_ : Benchmark , HemeBindingMover , HemeReplace , Minimize , NCMinimize , RamaTestMover , ScTrials
• score_fxn : JDtestmover
• score_fxn_ : A3BHbsCreatorMover
• score_fxn_cart_ : A3BHbsCreatorMover
• score_map_ : RamaTestMover , ScTrials
• score_name : SamplingManager
• score_pose() : ZincSiteEvaluator
• score_terms_ : ui::viewers::ScoreFileView
• score_type_ : ScoreEachBenchmark , ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• score_types_for_method() : MyCI1B_Creator , test.T850_SubClassing.MyNewCI1B_Creator
• ScoreAnalyticEtableBenchmark() : ScoreAnalyticEtableBenchmark
• ScoreBenchmark() : ScoreBenchmark
• ScoreBreakdown() : ScoreBreakdown
• scored : myspace::DataStruct
• ScoreEachBenchmark() : ScoreEachBenchmark
• scorefile_ : RamaTestMover , ScTrials
• scorefile_name : pyrosetta.distributed.cluster.core.PyRosettaCluster
• scorefile_path : pyrosetta.distributed.cluster.core.PyRosettaCluster
• ScoreFileView() : ui::viewers::ScoreFileView
• ScoreFragInfo() : ScoreFragInfo
• ScoreFragmentSetMover() : ScoreFragmentSetMover
• scorefunction_ : zinc2_homodimer_setup
• ScoreFunctionFingerprintMover() : ScoreFunctionFingerprintMover
• ScoreFunctionOP : CountContact
• scorefxn() : ExtractATD , MinimizerBenchmark< sft, TScale > , pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor , pyrosetta.toolbox.py_jobdistributor.PyJobDistributor , test.T010_LoadPDB.LoadPDBTest
• scorefxn_ : BacksideHbondFinderMover , CalcIrms , CalcsTestMover , CenRotCanonicalMover , CountContact , DeleteSegments , dsRNA_grow , ExposedStrandMover , ExtractATD , FastRelaxPerformanceBenchmark , HDdesignMover , HDmakerMover , IAMover , InteractionGraphPerformanceBenchmark , InterfaceStrandFinderMover , LocalRmsd , MinPackMinMover , MotifScanMover , myspace::GraftTester , PepMinMover , PerturbStruct , Protocol_MolecularDynamics , protocols::antibody::design::AntibodyDesignMoverGenerator , RescorePDDF , RescoreSAXS , RotateSAXS , RTminOptMultifunc , ScoreEachBenchmark , SmoothFragRepackMover , SymFixbbMover , XMLprinterMover , ZincMinimize , ZincSiteEvaluator
• scorefxn_a : HDdesignMover , SymFixbbMover
• scorefxn_centroid_ : Foldptn , PickBAB
• scorefxn_cst_ : CaToAllAtom
• scorefxn_dock_ : CenRotDockingMover , CenRotRBRelaxMover
• scorefxn_fullatom_ : Foldptn , PickBAB
• scorefxn_min_ : CenRotRelaxMover
• scorefxn_repack_ : CenRotDockingMover , CenRotRBRelaxMover , CenRotRelaxMover
• scorefxn_zn_ : ZincMinimize
• ScoreMover() : ScoreMover
• scoreName : pyrosetta.EnergyMethod
• scores : myspace::DataStruct , pyrosetta.distributed.packed_pose.core.PackedPose
• scores_ : SomeThing
• scores_1b : FragmentAssemblyMover
• scores_1b_ : FragMonteCarlo
• scores_2b : FragmentAssemblyMover
• scores_2b_ : FragMonteCarlo
• scoresum : InterfaceHit
• scoreType : pyrosetta.EnergyMethod
• scoring_file : erraser_option.erraser_option
• scratch_ : HBondedPairIterator
• scratch_dir : pyrosetta.distributed.cluster.core.PyRosettaCluster
• ScratchMatrix : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• ScratchVector : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• scripts : job_manager.CommandManager
• ScTrials() : ScTrials
• sd() : AbsFunc , DCST , pep_coord_cst
• sd_ : AbsFunc
• sdata : pyrosetta.io.silent_file_map.SilentFileEnergyAccessor , pyrosetta.io.silent_file_map.SilentFileMap , pyrosetta.io.silent_file_map.SilentFilePoseAccessor
• sdev_ : InteractionDistMinimizer
• search_paths_ : basic::resource_manager::locator::FileSystemResourceLocator
• search_syn_pyrimidine_only_when_native_syn : erraser_option.erraser_option
• second() : detail::chrono_formatter< FormatContext, OutputIt, Rep, Period >
• second_node_ind_ : utility::graph::LowMemEdge
• second_res : basic::datacache::ResRotPair
• second_rot : basic::datacache::ResRotPair
• secondary_structs_ : apps::pilot::frankdt::Motif
• SecondaryStruct() : apps::pilot::frankdt::SecondaryStruct
• SecondaryStructureChunk() : SecondaryStructureChunk
• seconds : detail::chrono_formatter< FormatContext, OutputIt, Rep, Period > , pyrosetta.distributed.utility.log.ProgressLogger
• secret : PyMOL-Rosetta-relay-client.SecretInputDialog
• secret_line_edit : PyMOL-Rosetta-relay-client.SecretInputDialog
• secstruct_ : apps::pilot::AlignChunkMover
• Section : ObjexxFCL::FArray1< T > , ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::FArray< T > , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T >
• seed() : basic::random::RandomGeneratorSettings
• seed_ : basic::random::RandomGeneratorSettings , numeric::random::standard_RG
• seed_offset() : basic::random::RandomGeneratorSettings
• seed_offset_ : basic::random::RandomGeneratorSettings
• seeds : pyrosetta.distributed.cluster.core.PyRosettaCluster
• seek_beg() : utility::io::icstream , utility::io::irstream , utility::io::izstream
• segment_file_generator() : apps::pilot::frankdt::segment_file_generator
• segment_file_path_ : MakeSegmentFileMPI
• SegmentRebuild : SwapElementsMover1 , SwapElementsMover2
• SegmentRebuildOP : SwapElementsMover1 , SwapElementsMover2
• segments_region_ : DeleteSegments
• select_relevant_states() : SimpleDGBindAggregateFunction
• select_working_set() : Solver , Solver_NU
• self_pure_test_virtual_p() : utility::py::OverloadTest
• self_pure_test_virtual_ref() : utility::py::OverloadTest
• self_scsc() : BuriedUnsatPolarsFinder
• self_test_virtual_p() : utility::py::OverloadTest
• self_test_virtual_ref() : utility::py::OverloadTest
• selfcross_c2() : MatchSet
• Semantic_actions() : utility::json_spirit::Semantic_actions< Value_type, Iter_type >
• Semantic_actions_t : utility::json_spirit::Json_grammer< Value_type, Iter_type >
• semi_constructed_expression_ : numeric::expression_parser::ExpressionCreator
• send() : utility::signals::LinkUnit , utility::signals::SignalHub< ReturnType, Signal >
• send_char_to_node() : utility::SimulateMPI
• send_double_to_node() : utility::SimulateMPI
• send_doubles_to_node() : utility::SimulateMPI
• send_integer_to_node() : utility::SimulateMPI
• send_integers_to_node() : utility::SimulateMPI
• send_signal() : utility::signals::SignalHub< ReturnType, Signal > , utility::signals::TokenHub< ReturnType, Signal >
• send_size_to_node() : utility::SimulateMPI
• send_sizes_to_node() : utility::SimulateMPI
• send_string_to_node() : utility::SimulateMPI
• send_to_master() : utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
• senior_authors() : basic::citation_manager::Citation
• senior_authors_ : basic::citation_manager::Citation
• sep : arg_join< It, Sentinel, Char > , DisulfEpos , PairScore , tuple_arg_join< Char, T >
• sep_size : detail::int_writer< OutputIt, Char, UInt >
• sep_ss_ : RDF_Mover
• separate_complex() : InterfaceDDGMover
• seq : ConstraintConfig
• seqpos() : InterfaceDDGMutationTask , MotifScanMover
• seqpos1_ : SameResidueTypeConstraint
• seqpos2_ : SameResidueTypeConstraint
• seqpos_ : CloseContactWithResidue , InterfaceDDGMutationTask , MotifScanMover
• seqpos_alignments_ : ChallengeMover
• seqpos_start_ : apps::pilot::AlignChunkMover
• seqpos_stop_ : apps::pilot::AlignChunkMover
• seqs_ : PrintSequenceMover
• sequence : pyrosetta.toolbox.py_jobdistributor.PyJobDistributor , SecondaryStructureChunk
• sequence_ : DomainAssemblerNDocker , protocols::abinitio::ApplicationContext , protocols::abinitio::JumpSpecificAbrelax , SecondaryStructureChunk , TryScoreFilter , ui::task::FunctorASyncSequence , ui::task::FunctorSequence , utility::CSI_Sequence
• sequence_alignment_ : apps::pilot::AlignChunkMover
• sequence_alignment_local_ : apps::pilot::AlignChunkMover
• sequence_alignments_ : apps::pilot::MultiTemplateAlignChunkMover
• sequence_position_start_ : SecondaryStructureChunk
• SequenceCoords() : SequenceCoords
• SequenceProfile : FragmentBasedDesign
• SequenceProfileDB() : SequenceProfileDB
• SequenceProfileOP : FragmentBasedDesign
• sequences_ : MPDomainAssembly
• sequential : utility::keys::AutoKey< O, S, C > , utility::keys::UserKey< O, S, C >
• SerializablePose() : SerializablePose
• serialize() : numeric::interpolation::spline::CompoundInterpolator , numeric::interpolation::spline::Interpolator , numeric::interpolation::spline::SimpleInterpolator
• serializer : pyrosetta.distributed.cluster.core.PyRosettaCluster
• serve_until_stopped() : pyrosetta.distributed.cluster.logging_listeners.SocketListener
• server_modification_time_ : ui::task::Node
• server_port_ : ServerInfo
• server_url_ : ServerInfo
• ServerInfo() : ServerInfo
• serverinfo_ : RosettaBackend , RosettaJob
• session() : utility::sql_database::session
• session_factory : job_manager.JobWindow
• set() : basic::datacache::DataCache< Data > , basic::datacache::HierarchicalDataMap , basic::MetricValue< T > , basic::Report , basic::Reporter , detail::buffer< T > , Mode , numeric::IntervalSet< T > , ui::task::ProjectModel , utility::DenseBoolMap< NUM_ELEMS, BASE_INDEX >
• Set : utility::keys::KeySetTraits< K >
• set_abstract() : utility::tag::XMLSchemaElement
• set_accessed() : utility::options::Option
• set_Aform_torsions() : dsRNA_grow
• set_algorithm() : NativeEnsemble
• set_aligned_chunk() : apps::pilot::AlignChunkMover
• set_all_flags() : numeric::ClusteringTreeNode
• set_allocated() : utility::graph::NegSpaceElement< T >
• set_already_defined_element() : utility::tag::XMLSchemaRepeatableCTNode
• set_already_defined_element_w_alt_name() : utility::tag::XMLSchemaRepeatableCTNode
• set_alternative_search_paths() : utility::io::izstream
• set_angle_stdev() : ZincMatchFilter
• set_angle_weight() : ZincMatchFilter
• set_array() : utility::graph::NegSpaceElement< T >
• set_array_size() : utility::graph::ArrayPool< T >
• set_as_mover() : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_as_mover_ : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_atom_sasa_cutoff() : BacksideHbondFinderMover
• set_background_color : text_style
• set_bb_hbonds() : Features
• set_bfactors() : SimulateCryoMover
• set_bin_width() : numeric::interpolation::InterpolatedPotential< N >
• set_block_size() : utility::graph::ArrayPool< T >
• set_box_size_multiplier() : SimulateCryoMover
• set_c_term_seq() : enumerate_junctions.Component
• set_cartmin() : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_cdr() : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_cdr_only() : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_cdr_range() : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_cdrs() : myspace::GraftTester , protocols::antibody::design::AntibodyDesignMoverGenerator
• set_chain_no() : PhProtocol
• set_char_msg() : utility::SimulateMPIMessage
• set_chunk_size() : utility::sql_database::session
• set_cl_value() : utility::options::Option , utility::options::ScalarOption , utility::options::VectorOption
• set_cmd_opts() : mutant_modeler.MutantModeler
• set_cognate_partners() : abbinding
• set_cognate_pdb() : abbinding
• set_color_mode() : ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• set_commandline_options() : DesignGlycansProtocol , DockGlycansProtocol , GlycomutagenesisProtocol
• set_copies_helix1() : ui::ui_protocols::helical_bundle::HelixOptionWidget
• set_copies_helix1_pitch() : ui::ui_protocols::helical_bundle::HelixOptionWidget
• set_copying_enabled() : ui::ui_protocols::helical_bundle::HelixOptionWidget
• set_data_ : ui::task::Node
• set_data_callback() : ui::task::Node
• set_db_mode() : utility::sql_database::session
• set_db_name() : utility::sql_database::session
• set_db_partition() : utility::sql_database::session
• set_db_to_use_threshold() : ClosabilityScore
• set_default() : abbinding , PhDocking , PhProtocol
• set_default_final_stream() : basic::TracerImpl
• set_default_parameters() : myspace::Scheduler
• set_defaults() : protocols::antibody::design::AntibodyDesignMoverGenerator , TestQuickRelaxMover
• set_density_wt() : MinPackMin
• set_description() : NativeEnsemble
• set_diagonal() : numeric::xyzMatrix< T > , ObjexxFCL::FArray2< T >
• set_dihedral_stdev() : ZincMatchFilter
• set_dihedral_weight() : ZincMatchFilter
• set_dimension() : numeric::MultiDimensionalHistogram
• set_dimension_sizes() : utility::FixedSizeLexicographicalIterator< S > , utility::LexicographicalIterator
• set_dimensionality() : numeric::interpolation::spline::PolycubicSplineBase , numeric::MathNTensorBase< T >
• set_distance_stdev() : ZincMatchFilter
• set_distance_weight() : ZincMatchFilter
• set_distmax() : protocols::moves::SimpleCstMover
• set_distmin() : protocols::moves::SimpleCstMover
• set_dock_high_res_scorefunction() : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_dock_low_res_scorefunction() : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_double_msg() : utility::SimulateMPIMessage
• set_doubles_msg() : utility::SimulateMPIMessage
• set_drag_mode() : ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• set_dualspace() : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_dump_frequency() : NativeEnsemble
• set_dumppdb() : myspace::DataClass
• set_element_w_attributes() : utility::tag::XMLSchemaRepeatableCTNode
• set_energy_range() : ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• set_everything_except_delta_omega0_copies_helix1() : ui::ui_protocols::helical_bundle::HelicalBundleDialogueWidget
• set_expression() : numeric::expression_parser::UnaryExpression
• set_extended_drag_mode() : ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget
• set_extent() : SimulateCryoMover
• set_fail_bad_input_ : JDtestmover
• set_fail_no_retry_ : JDtestmover
• set_file_contents() : utility::io::FileContentsMap , utility::tag::XMLErrorHandler
• set_file_name() : abbinding , PhDocking , PhProtocol , PoseAndData
• set_filter() : ui::network::BowmanModel
• set_first_expression() : numeric::expression_parser::BinaryExpression
• set_foldtree_for_variable_movement() : MinTestMover
• set_foreground_color : text_style
• set_ft_mover() : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_gauss_multiplier() : SimulateCryoMover
• set_gauss_offset() : SimulateCryoMover
• set_group_subelement() : utility::tag::XMLSchemaRepeatableCTNode
• set_hal_settings() : ui::network::BowmanThread
• set_head() : utility::in_place_list< T >
• set_helix_index() : ui::ui_protocols::helical_bundle::HelicalBundleDialogueWidget
• set_helix_length() : ui::ui_protocols::helical_bundle::HelicalBundleDialogueWidget
• set_high_res_dock_inner_cycles() : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_high_res_dock_outer_cycles() : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_identity() : numeric::HomogeneousTransform< T >
• set_identity_rotation() : numeric::HomogeneousTransform< T >
• set_identity_transform() : numeric::HomogeneousTransform< T >
• set_image_stack() : SimulateCryoMover
• set_include_neighbor_sc() : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_indent() : basic::Emitter
• set_index() : Features , utility::libsvm::Svm_node_rosetta , utility::SimulateMPIMessage
• set_index_and_owner() : utility::graph::UEVertex< V, E >
• set_input_file() : NativeEnsemble
• set_integer_msg() : utility::SimulateMPIMessage
• set_integers_msg() : utility::SimulateMPIMessage
• set_integration_test() : SimulateCryoMover
• set_interpolator() : numeric::interpolation::Histogram< X, Y >
• set_invert() : ui::ui_protocols::helical_bundle::HelicalBundleDialogueWidget
• set_ios_hook() : basic::Tracer , basic::TracerImpl , pyrosetta.logging_support.PythonLoggingSink , test.T007_TracerIO.MyPyTracer
• set_iterations() : NativeEnsemble
• set_keep_input_scores() : MyScoreMover
• set_kids_naming_func() : utility::tag::XMLSchemaRepeatableCTNode
• set_lastpos() : ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• set_lb_function() : numeric::interpolation::spline::Interpolator
• set_local_print_channel_name() : basic::Tracer , basic::TracerImpl
• set_loop() : NativeEnsemble
• set_loops_to_virt_ala() : apps::pilot::SampleSecondaryStructureAlignmentMover
• set_lower() : numeric::geometry::BoundingBox< T >
• set_masked_key() : pyrosetta.distributed.cluster.logging_handlers.MsgpackHmacSocketHandler , pyrosetta.distributed.cluster.logging_handlers.MultiSocketHandler
• set_matrix_A() : basic::svd::SVD_Solver
• set_maxiter() : myspace::Scheduler
• set_min_interface() : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_min_mover() : ZincMinimize
• set_min_sc() : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_model_group() : utility::tag::XMLSchemaComplexType
• set_mover() : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_mpi_rank() : utility::SimulateMPI
• set_n_term_seq() : enumerate_junctions.Component
• set_native() : RescoreCenrot
• set_native_pose() : Protocol_MolecularDynamics
• set_neighbor_distance_cutoff() : BacksideHbondFinderMover
• set_new_final_stream() : basic::TracerImpl
• set_next() : utility::graph::NegSpaceElement< T >
• set_next_correspondence() : utility::subset_mapping
• set_next_size() : boost::unordered_object_pool< T, UserAllocator >
• set_nlcontacts() : Features
• set_noise_range() : SimulateCryoMover
• set_nonparametric_COM_vect() : ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget
• set_NR() : SimulateCryoMover
• set_nread_limit_for_file() : utility::io::FileContentsMap
• set_num_hyneighbors() : Features
• set_num_neighbors() : Features
• set_num_neighbors_counting_self_static() : utility::graph::Node
• set_num_nodes() : utility::graph::Digraph , utility::graph::Graph , utility::graph::LowMemGraph< _LMNode, _LMEdge >
• set_num_vertices() : utility::graph::UpperEdgeGraph< V, E >
• set_open_mode() : basic::resource_manager::locator::FileListResourceLocator , basic::resource_manager::locator::FileSystemResourceLocator
• set_option_value_cl() : utility::options::OptionCollection
• set_option_value_file() : utility::options::OptionCollection
• set_output_raw_scores() : abbinding
• set_packstat() : Features
• set_parameters() : Spacegroup
• set_params() : numeric::interpolation::Histogram< X, Y >
• set_parent() : basic::datacache::HierarchicalDataMap
• set_partners() : abbinding , PhDocking
• set_pdb_seq_pos() : Features
• set_periodic() : numeric::interpolation::InterpolatedPotential< N >
• set_perlin_noise_multiplier() : SimulateCryoMover
• set_perlin_noise_offset() : SimulateCryoMover
• set_pertscale() : myspace::Scheduler
• set_pH_mode() : PhDocking
• set_pH_neighbor_pack() : PhProtocol
• set_pH_prepack() : PhProtocol
• set_pH_relax() : PhProtocol
• set_phi() : Link , PoseWrap
• set_phi_psi() : Link
• set_pixel_size() : SimulateCryoMover
• set_pka_all() : PhProtocol
• set_pka_rad() : PhProtocol
• set_point() : numeric::HomogeneousTransform< T >
• set_pos_in_owners_list() : utility::graph::DirectedEdge , utility::graph::Edge
• set_pose() : ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• set_pose_after_closure() : UniformPerturber
• set_position_from_index() : utility::FixedSizeLexicographicalIterator< S > , utility::LexicographicalIterator
• set_postgres_schema_search_path() : utility::sql_database::DatabaseSessionManager
• set_pq_schema() : utility::sql_database::session
• set_pre_process() : abbinding
• set_protein_pack_reps() : mutant_modeler.MutantModeler
• set_psi() : Link
• set_PyExitCallBack() : utility::py::PyExitCallback
• set_quiet() : NativeEnsemble
• set_quote_options() : utility::tag::Tag
• set_random_torsion() : MPDomainAssembly
• set_real_subwidget() : ui::ui_protocols::helical_bundle::HelicalBundleDialogueWidget
• set_ref_pose_from_filename() : DockGlycansProtocol
• set_refine() : abbinding
• set_registry_shift() : apps::pilot::AlignChunkMover
• set_res_no() : PhProtocol
• set_reset_torsion_unaligned() : apps::pilot::AlignChunkMover
• set_resfile() : PhDocking , SetupHotspotMover
• set_residue_selector() : ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• set_residues() : CartPerturber
• set_resolution() : SimulateCryoMover
• set_root_atomno() : PoseWrap
• set_root_node_naming_func() : utility::tag::XMLSchemaRepeatableCTNode
• set_rosetta_prefix() : mutant_modeler.MutantModeler
• set_rotamer_prot_stats() : PhProtocol
• set_rounds() : CartPerturber
• set_run_locally() : mutant_modeler.MutantModeler
• set_sc_hbonds() : Features
• set_sc_sasa() : Features
• set_sc_temp_ave() : Features
• set_scfxn() : RepackCenrotMover , RescoreCenrot
• set_schema() : utility::tag::XMLValidator , utility::tag::XMLValidatorImpl
• set_score_type() : ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• set_scorefunction() : protocols::antibody::design::AntibodyDesignMoverGenerator , ZincMinimize
• set_scorefxn() : ScoreEachBenchmark
• set_search_paths() : basic::resource_manager::locator::FileSystemResourceLocator
• set_second_expression() : numeric::expression_parser::BinaryExpression
• set_seed() : numeric::random::RandomGenerator
• set_sequence() : SecondaryStructureChunk
• set_sfxn() : mutant_modeler.MutantModeler
• set_shallow_copy() : basic::datacache::CacheableResRotPairFloatMap
• set_show_accessed_options_flag() : utility::options::OptionCollection
• set_show_unused_options_flag() : utility::options::OptionCollection
• set_size_msg() : utility::SimulateMPIMessage
• set_sizes_msg() : utility::SimulateMPIMessage
• set_skip_scoring() : MyScoreMover
• set_source_size() : utility::subset_mapping
• set_spacegroup() : Spacegroup
• set_ss() : SecondaryStructureChunk
• set_start_coord_csts() : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_start_seqpos() : SecondaryStructureChunk
• set_string_msg() : utility::SimulateMPIMessage
• set_subelements_pick_one() : utility::tag::XMLSchemaComplexTypeGenerator
• set_subelements_pick_one_optional() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• set_subelements_pick_one_or_none() : utility::tag::XMLSchemaComplexTypeGenerator
• set_subelements_pick_one_required() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• set_subelements_repeatable() : utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl
• set_subelements_single_appearance_optional() : utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl
• set_subelements_single_appearance_required() : utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl
• set_subelements_single_appearance_required_and_ordered() : utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl
• set_tail() : utility::in_place_list< T >
• set_target_filename() : pyrosetta.protocols.h5_fragment_store_provider.H5PyFragmentStoreProvider
• set_task_factory() : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_temperature() : NativeEnsemble
• set_template() : apps::pilot::AlignChunkMover
• set_term_seq() : enumerate_junctions.Component
• set_termination_codes() : ui::task::NetworkCall
• set_tetrahedral_stdev() : ZincMatchFilter
• set_tetrahedral_weight() : ZincMatchFilter
• set_tf_ : protocols::antibody::design::AntibodyDesignMoverGenerator
• set_throw_on_double_registration() : basic::resource_manager::ResourceLoaderFactory , basic::resource_manager::ResourceLocatorFactory
• set_to_beta_strand() : ui::ui_protocols::helical_bundle::HelicalBundleDialogueWidget
• set_token_type() : numeric::expression_parser::SimpleToken
• set_tracer_options() : basic::TracerImpl
• set_transaction_mode() : utility::sql_database::session
• set_transform() : numeric::HomogeneousTransform< T >
• set_ub_function() : numeric::interpolation::spline::Interpolator
• set_unbound_pdbs() : PhDocking
• set_unit() : numeric::MathMatrix< T >
• set_up_foldtree() : HECTMover
• set_up_taskfactory() : HECTMover
• set_upper() : numeric::geometry::BoundingBox< T >
• set_use_conservative_set() : protocols::antibody::task_operations::AddFrameworkProfilesOperation
• set_value() : numeric::expression_parser::LiteralExpression , numeric::expression_parser::VariableExpression , numeric::MathNTensor< T, N > , numeric::MathNTensorBase< T > , ui::ui_protocols::helical_bundle::HelixOptionWidget , utility::libsvm::Svm_node_rosetta , utility::options::Option , utility::options::ScalarOption , utility::options::VectorOption
• set_vary_ca_bond_angles() : UniformPerturber
• set_vector_b() : basic::svd::SVD_Solver
• set_visited() : numeric::ClusteringTreeNode
• set_weight() : numeric::random::WeightedSampler
• set_weights() : NativeEnsemble
• set_wt_RNA_secstruct() : mutant_modeler.MutantModeler
• set_xaxis_rotation_deg() : numeric::HomogeneousTransform< T >
• set_xaxis_rotation_rad() : numeric::HomogeneousTransform< T >
• set_yaxis_rotation_deg() : numeric::HomogeneousTransform< T >
• set_yaxis_rotation_rad() : numeric::HomogeneousTransform< T >
• set_year_and_article() : basic::citation_manager::Citation
• set_zaxis_rotation_deg() : numeric::HomogeneousTransform< T >
• set_zaxis_rotation_rad() : numeric::HomogeneousTransform< T >
• set_zero() : numeric::MathMatrix< T >
• setAccessed() : utility::tag::Tag
• setargs() : CL
• setData() : ui::task::FileTableModel
• SetDataCallback : ui::task::Node
• setDefaults() : protocols::abinitio::CustomAbinitio
• setDS() : PairScore
• setFilename() : PairScore
• setName() : utility::tag::Tag
• SetObjects() : numeric::VoxelGrid< T >
• SetOfClusters() : SetOfClusters
• SetOfSubelementsBehavior : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• setOption() : utility::tag::Tag
• setOptions() : utility::tag::Tag
• sets() : utility::graph::DisjointSets
• setSeed() : numeric::random::mt19937_RG , numeric::random::standard_RG , numeric::random::uniform_RG
• setting() : Spacegroup
• setting_ : Spacegroup
• setup() : CenRotDockingMover
• setUp() : DesignBenchmark , DockingBenchmark< dock, TScale > , FastRelaxPerformanceBenchmark
• setup() : HPatchByChainNPDCalculator
• setUp() : InstantiateModulesBenchmark , InteractionGraphPerformanceBenchmark , InterfaceFeaturesTests , LigandDockBenchmark , MinimizerBenchmark< sft, TScale >
• setup() : NBuriedUnsatsCalcultor
• setUp() : OptionCollectionBenchmark , PDB_IOBenchmark , PerformanceBenchmark
• setup() : protocols::abinitio::Application , protocols::abinitio::JumpSpecificAbrelax , pyrosetta.distributed.cluster.logging_listeners.LogRecordRequestHandler , pyrosetta.distributed.cluster.worker_plugins.SocketLoggerPlugin , pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask , pyrosetta.distributed.tasks.score.ScorePoseTask , pyrosetta.distributed.tasks.taskbase.TaskBase
• setUp() : pyrosetta.tests.distributed.cluster.test_smoke.TestBase , pyrosetta.tests.distributed.test_dask.TestDaskDistribution , pyrosetta.tests.distributed.test_viewer.TestViewer
• setup() : SamplingManager
• setUp() : ScoreAnalyticEtableBenchmark , ScoreBenchmark , ScoreEachBenchmark , ShearMoverBenchmark , SmallMoverBenchmark
• setup() : ThisApplication
• setUp() : XMLParseBenchmark
• setup() : zinc1_homodimer_design , zinc2_homodimer_design
• setup_ : CrystDesign
• setup_cen_domains() : DomainAssemblerNDocker
• setup_dock_foldtree() : protocols::antibody::design::AntibodyDesignMoverGenerator
• setup_dock_high_res() : protocols::antibody::design::AntibodyDesignMoverGenerator
• setup_dock_low_res() : protocols::antibody::design::AntibodyDesignMoverGenerator
• setup_file_handler() : nacl_rosetta::RosettaInstance
• setup_filter_clashes() : zinc2_homodimer_setup
• setup_filter_stats() : A3BHbsDockDesignMinimizeMover , DougsDockDesignMinimizeMagicMover
• setup_fold() : protocols::abinitio::JumpSpecificAbrelax
• setup_foldtree() : abbinding , PhDocking
• setup_for_current_default_sfxn() : InteractionGraphPerformanceBenchmark
• setup_for_denseig() : InteractionGraphPerformanceBenchmark
• setup_for_linmemig() : InteractionGraphPerformanceBenchmark
• setup_for_mmstd() : FastRelaxPerformanceBenchmark , InteractionGraphPerformanceBenchmark
• setup_for_pdig() : InteractionGraphPerformanceBenchmark
• setup_for_sc12he() : FastRelaxPerformanceBenchmark , InteractionGraphPerformanceBenchmark
• setup_for_sc12sp2() : FastRelaxPerformanceBenchmark , InteractionGraphPerformanceBenchmark
• setup_for_score12() : FastRelaxPerformanceBenchmark , InteractionGraphPerformanceBenchmark
• setup_for_sp2hecart() : FastRelaxPerformanceBenchmark , InteractionGraphPerformanceBenchmark
• setup_fragments() : protocols::abinitio::JumpSpecificAbrelax
• setup_general_min_foldtree() : protocols::antibody::design::AntibodyDesignMoverGenerator
• setup_grafted_monomer() : zinc2_homodimer_setup
• setup_handler() : pyrosetta.distributed.cluster.logging_handlers.MultiSocketHandler , pyrosetta.distributed.cluster.logging_listeners.SocketListener
• setup_homodimer() : zinc2_homodimer_setup
• setup_input_packed_pose() : pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest
• setup_jumps() : protocols::abinitio::JumpSpecificAbrelax
• setup_LHsampler() : myspace::Scheduler
• setup_locker() : BBG_Cyclic_Mover
• setup_logger() : pyrosetta.tests.distributed.cluster.test_smoke.RuntimeTest
• setup_maps() : CrystFFTDock
• setup_metalsite() : zinc1_homodimer_design , zinc2_homodimer_design
• setup_metalsite_constraints() : zinc1_homodimer_design
• setup_metalsites() : zinc2_homodimer_setup
• setup_minimizer() : protocols::antibody::design::AntibodyDesignMoverGenerator
• setup_movemap_bb_chi() : zinc1_homodimer_design
• setup_movers() : zinc1_homodimer_design
• setup_native() : CalcIrms
• setup_output_tag() : zinc1_homodimer_design
• setup_pert_foldtree() : A3BHbsDockDesignMinimizeMover , DougsDockDesignMinimizeMagicMover , HotspotPlacementMover
• setup_pert_foldtree_byres() : HotspotPlacementMover
• setup_pH_mode() : PhDocking
• setup_Pmls() : numeric::fourier::SHT
• setup_pose() : TryScoreFilter
• setup_real() : ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T >
• setup_relax() : protocols::antibody::design::AntibodyDesignMoverGenerator
• setup_repack_antigen_ab_interface() : protocols::antibody::design::AntibodyDesignMoverGenerator
• setup_repack_cdrs() : protocols::antibody::design::AntibodyDesignMoverGenerator
• setup_RepulsiveRampMover() : abbinding
• setup_rna_atoms_for_pose() : CapriTotalEnergy
• setup_rollmoving() : zinc1_homodimer_design
• setup_scorefunctions() : zinc1_homodimer_design
• setup_scorefxns() : protocols::antibody::design::AntibodyDesignMoverGenerator
• setup_startree() : apps::pilot::SampleSecondaryStructureAlignmentMover
• setup_successful_ : ScoreEachBenchmark
• setup_task_and_repack() : abbinding , PhDocking
• setup_task_factory() : HemeReplace
• setup_task_mm() : SymFixbbMover
• setup_task_operations() : protocols::antibody::design::AntibodyDesignMoverGenerator
• setup_taskfactory() : zinc1_homodimer_design
• setup_taskfactory_scorefunction_movers() : zinc2_homodimer_design
• setup_templates() : protocols::abinitio::JumpSpecificAbrelax
• setup_tf() : XMLprinterMover
• setup_Weights() : numeric::fourier::SHT
• setup_Wig() : numeric::fourier::SHT
• SetupAdjacencyVector() : utility::graph::RingDetection< Graph >
• setUpClass() : pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor , pyrosetta.tests.distributed.cluster.test_smoke.ScoresTest , pyrosetta.tests.distributed.cluster.test_smoke.SmokeTestMulti , pyrosetta.tests.distributed.cluster.test_smoke.TestBase , test.T010_LoadPDB.LoadPDBTest , test.T300_PyJobDistributor.TestPyJobDistributor
• SetupGrid() : numeric::VoxelGrid< T >
• SetupHotspotMover() : SetupHotspotMover
• SetupMover() : SetupMover
• SetWrapper() : ObjexxFCL::SetWrapper< T >
• sf : test.T300_PyJobDistributor.TestPyJobDistributor
• sf3 : HubDenovo
• sf_ : DesignGlycansProtocol , DockGlycansProtocol , GlycomutagenesisProtocol , MoveThenFixH , RosettaHolesMover , ScMinMover
• sf_sugar_only_ : GlycomutagenesisProtocol
• sfasym : HubDenovo
• sfd_out : DomainAssemblerNDocker
• sformat : numeric::random::mt19937_RG
• sformat_idx : numeric::random::mt19937_RG
• sfsym : HubDenovo
• sfsymnocst : HubDenovo
• sfxn() : InterfaceDDGMover , mutant_modeler.MutantModeler , ScoreFunctionFingerprintMover
• sfxn_ : InterfaceDDGMover , MainWindow , MPDomainAssembly , MPInterfaceStatistics , MyScoreMover , NBuriedUnsatsCalcultor , Packing_energies , protocols::jd2::RECONMPIJobDistributor , RNA_ScoreMover , ScoreFunctionFingerprintMover , SSM_energies , TestQuickRelaxMover
• sg : SpacegroupHit
• sg_ : CrystFFTDock
• sha1 : pyrosetta.distributed.cluster.core.PyRosettaCluster
• shallow_copy_ : basic::datacache::CacheableResRotPairFloatMap
• shape() : numeric::VoxelArray< _Float, _Value >
• shape_ : numeric::VoxelArray< _Float, _Value >
• shared_from_this() : basic::datacache::CacheableResRotPairFloatMap , basic::datacache::CacheableString , basic::datacache::CacheableStringFloatMap , basic::datacache::CacheableStringIntegerMap , basic::datacache::CacheableStringMap , basic::datacache::CacheableUint64MathMatrixFloatMap , basic::datacache::DiagnosticData , basic::datacache::WriteableCacheableData , basic::datacache::WriteableCacheableMap
• sharm_invTransform() : numeric::fourier::SHT
• sharm_transform() : numeric::fourier::SHT
• shear_mover : ShearMoverBenchmark
• shear_mover_ : DockGlycansProtocol
• ShearMoverBenchmark() : ShearMoverBenchmark
• sheet_descriptions_ : DomainDescription
• sheet_match() : DomainDescription
• sheet_start_ : HDmakerMover
• sheet_stop_ : HDmakerMover
• SheetDescription : DomainDescription
• SheetFoldType : Foldptn
• SheetFoldTypeManager : Foldptn
• SheetSet : Foldptn , PickBAB
• SheetSetOP : Foldptn , PickBAB
• shift : latticeHit
• shift_ : ObjexxFCL::FArray1< T > , ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::FArray< T > , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T >
• shift_pH_ : PhProtocol
• shift_set() : ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::FArray< T > , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T >
• short : options_class.Option
• short_description() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• short_description_ : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• short_max() : numeric::geometry::hashing::xyzStripeHash , numeric::geometry::hashing::xyzStripeHashWithMeta< T >
• short_min() : numeric::geometry::hashing::xyzStripeHash , numeric::geometry::hashing::xyzStripeHashWithMeta< T >
• short_of() : ObjexxFCL::Fstring
• shortd() : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• shorter() : numeric::xyzTriple< T > , numeric::xyzVector< T >
• shorter_interval_tie_lower_threshold : detail::dragonbox::float_info< double > , detail::dragonbox::float_info< float >
• shorter_interval_tie_upper_threshold : detail::dragonbox::float_info< double > , detail::dragonbox::float_info< float >
• shorter_or_equal() : numeric::xyzTriple< T > , numeric::xyzVector< T >
• shouldVisitTemplateInstantiations() : BinderVisitor
• show() : basic::resource_manager::locator::DatabaseResourceLocator , basic::resource_manager::locator::FileListResourceLocator , basic::resource_manager::locator::FileSystemResourceLocator , basic::resource_manager::locator::NullResourceLocator , basic::resource_manager::ResourceLocator , CCParam , DesignGlycansProtocol , DockGlycansProtocol , GlycanClashCheckMover , GlycomutagenesisProtocol , numeric::HomogeneousTransform< T > , numeric::kdtree::HyperRectangle , numeric::kdtree::KDPoint , numeric::kdtree::KDPointList , numeric::Polynomial_1d , pointGroupHit , pyrosetta.distributed.viewer.core.Viewer , SameResidueTypeConstraint , utility::excn::Exception , utility::Show
• show_accessed_options() : utility::options::OptionCollection
• show_accessed_options_ : utility::options::OptionCollection
• show_all() : utility::options::OptionCollection
• show_all_hier() : utility::options::OptionCollection
• show_contents() : utility::Inline_File_Provider
• show_cst_grids() : ConstraintConfig
• show_cstset() : ConstraintToolMover
• show_cuts() : ThisApplication
• show_definition() : AbsFunc , CoupledFunc , RepFunc
• show_footer() : NativeEnsemble
• show_header() : NativeEnsemble
• show_help() : utility::options::OptionCollection
• show_help_hier() : utility::options::OptionCollection
• show_inaccessed_user_options() : utility::options::OptionCollection
• show_jumps() : ThisApplication
• show_membrane_position() : MembraneRelaxMover
• show_move_stats() : job_manager.DatabaseWindow
• show_option_help() : utility::options::OptionCollection
• show_option_help_hier() : utility::options::OptionCollection
• show_progress() : NativeEnsemble
• show_sequence() : ConstraintConfig
• show_table_text() : utility::options::OptionCollection
• show_table_Wiki() : utility::options::OptionCollection
• show_unused_options() : utility::options::OptionCollection
• show_unused_options_ : utility::options::OptionCollection
• show_user() : utility::options::OptionCollection
• showpoint : detail::float_specs
• ShowViolation() : protocols::abinitio::ShowViolation
• shrink() : ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< T > , utility::BitVector< B > , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::vectorL< L, T, A > , utility::vectorL< L, bool, A >
• shrinking : svm_parameter
• SHT() : numeric::fourier::SHT
• si : Solver_NU
• sic_ : TCDock
• sics_ : SlideTask
• sicscore : Hit
• side_inv_ : ClashCheck , MatchSet
• side_length : test.Workshop9_my_shapes.MySquare
• sidechain_mover : SamplingManager
• sidechain_weight_ : NativeEnsemble
• sidechainmover_ : CenRotCanonicalMover
• sigma : basic::sampling::orientations::QuaternionGrid
• sigmoidish_neighbor() : EnvToolMover , MatchSet
• sign : basic_format_specs< Char > , detail::float_specs , SVR_Q
• signal_allowed() : utility::signals::BufferedSignalHub< ReturnType, Signal > , utility::signals::SignalHub< ReturnType, Signal >
• SignalHub() : utility::signals::SignalHub< ReturnType, Signal >
• significand : detail::big_decimal_fp , detail::dragonbox::decimal_fp< T >
• significand_bits : detail::dragonbox::float_info< double > , detail::dragonbox::float_info< float >
• significand_size : detail::big_decimal_fp , detail::fp
• significand_type : detail::dragonbox::decimal_fp< T > , detail::fp
• signs : detail::basic_data< T >
• silent_index : PoseAndData
• silent_pose : schema.Trajectory
• silent_score_file_ : protocols::abinitio::JumpSpecificAbrelax
• SilentProlineFixMover() : SilentProlineFixMover
• silents : myspace::DataStruct
• silentScoreFile_ : protocols::abinitio::ApplicationContext
• simple_element_naming_func_has_been_set() : utility::tag::XMLSchemaSimpleSubelementList
• SimpleBBMover() : SimpleBBMover
• SimpleCstMover() : protocols::moves::SimpleCstMover
• SimpleDGBindAggregateFunction() : SimpleDGBindAggregateFunction
• SimpleExpressionCreator() : numeric::expression_parser::SimpleExpressionCreator
• SimpleInterpolator() : numeric::interpolation::spline::SimpleInterpolator
• SimplePoseDrawOpenGLWidget() : ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• SimpleRange1() : utility::SimpleRange1
• SimpleToken() : numeric::expression_parser::SimpleToken
• simulate_mpi() : utility::SimulateMPI
• SimulateCryoMover() : SimulateCryoMover
• SimulateMPI() : utility::SimulateMPI
• SimulateMPIData() : utility::SimulateMPIData
• SimulateMPIMessage() : utility::SimulateMPIMessage
• simulation_ : utility::SimulateMPI
• simulation_name : pyrosetta.distributed.cluster.core.PyRosettaCluster
• simulation_records_in_scorefile : pyrosetta.distributed.cluster.core.PyRosettaCluster
• sin_alpha_ : Arch , TCDock
• sin_cos_tolerance() : numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• sin_of : numeric::xyzTriple< T >
• single_bunsat_thorough_check() : BuriedUnsatPolarsFinder
• single_helix : Dock
• single_line_arrays_ : utility::json_spirit::Generator< Value_type, Ostream_type >
• single_query() : pyrosetta.protocols.structure_search.StructureSearchManager
• SingleInterface() : SingleInterface
• SingletonBase() : utility::SingletonBase< T >
• SIR : ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T >
• SixDCoordinateBinner() : numeric::geometry::hashing::SixDCoordinateBinner
• SixDOffsetTree() : numeric::geometry::hashing::SixDOffsetTree
• size() : basic::datacache::ConstDataMap , basic::datacache::DataCache< Data > , basic::datacache::DataMap , basic_string_view< Char > , Cache
• Size : CountContact
• size() : detail::buffer< T > , detail::fill_t< Char > , detail::fixed_handler , detail::integer_sequence< T, N > , detail::named_arg_value< Char > , detail::string_value< Char > , detail::utf8_to_utf16 , detail::write_int_data< Char > , format_int , format_to_n_result< OutputIt > , HeapContainer< T, Comparator > , InterfaceHitDatabase , Mode , numeric::ClusteringTreeNode , numeric::DietNode< T > , numeric::DiscreteIntervalEncodingTree< T >
• Size : numeric::geometry::hashing::SixDCoordinateBinner , numeric::geometry::hashing::SixDOffsetTree
• size() : numeric::geometry::hashing::xyzStripeHash
• Size : numeric::interpolation::spline::PolycubicSplineBase
• size() : numeric::kdtree::KDPoint , numeric::kdtree::KDPointList , numeric::kdtree::KDTree , numeric::MathMatrix< T > , numeric::MathNTensor< T, N >
• Size : numeric::MathNTensor< T, N > , numeric::MathNTensorBase< T >
• size() : numeric::MathVector< T > , numeric::random::WeightedSampler
• Size : numeric::VoxelGrid< T >
• size() : ObjexxFCL::CArray< T >
• Size : ObjexxFCL::CArray< T >
• size() : ObjexxFCL::CArrayP< T >
• Size : ObjexxFCL::CArrayP< T >
• size() : ObjexxFCL::Chunk< T >
• Size : ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< T >
• size() : ObjexxFCL::ChunkVector< T > , ObjexxFCL::Cstring
• Size : ObjexxFCL::Cstring , ObjexxFCL::FArray1< T > , ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T >
• size() : ObjexxFCL::FArray< T >
• Size : ObjexxFCL::FArray< T > , ObjexxFCL::FArraySection< T >
• size() : ObjexxFCL::FArraySection< T > , ObjexxFCL::Fstring
• Size : ObjexxFCL::Fstring
• size() : ObjexxFCL::IndexRange
• Size : ObjexxFCL::IndexRange , ObjexxFCL::internal::ObserverGraph , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T >
• size() : pseudoTrace , pseudoTraceRecords , SetOfClusters , SphereSampler
• Size : SwapElementsMover1 , SwapElementsMover2
• size() : ui::network::Bowman , ui::task::Node , ui::task::PNode , utility::BitSet< B >
• Size : utility::BitSet< B >
• size() : utility::BitVector< B >
• Size : utility::BitVector< B >
• size() : utility::fixedsizearray0< T, S >
• Size : utility::fixedsizearray0< T, S > , utility::fixedsizearray1< T, S >
• size() : utility::fixedsizearray1< T, S > , utility::FixedSizeLexicographicalIterator< S >
• Size : utility::FixedSizeLexicographicalIterator< S >
• size() : utility::graph::Array0< T > , utility::graph::ArrayPoolElement< T > , utility::graph::DirectedEdgeList , utility::graph::EdgeList , utility::graph::HideVertexVisitor< Graph > , utility::heap
• Size : utility::in_place_list< T >
• size() : utility::in_place_list< T > , utility::io::TarFileHeader
• Size : utility::keys::AutoKey< O, S, C > , utility::keys::ClassKeyMap< K, T, C >
• size() : utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C >
• Size : utility::keys::ClassKeyVector< K, T, C > , utility::keys::Key , utility::keys::KeyCount
• size() : utility::keys::KeyLookup< K >
• Size : utility::keys::KeyLookup< K > , utility::keys::KeyMapTraits< K, T > , utility::keys::KeySetTraits< K > , utility::keys::KeyVector< K, T >
• size() : utility::keys::KeyVector< K, T >
• Size : utility::keys::KeyVectorTraits< K > , utility::keys::SmallKeyMap< K, T >
• size() : utility::keys::SmallKeyMap< K, T >
• Size : utility::keys::SmallKeyVector< K, T >
• size() : utility::keys::SmallKeyVector< K, T >
• Size : utility::keys::UserKey< O, S, C > , utility::LexicographicalIterator
• size() : utility::LexicographicalIterator
• Size : utility::list_element< T > , utility::options::Option
• size() : utility::options::Option , utility::options::ScalarOption_T_< K, T >
• Size : utility::options::VariantOption< O >
• size() : utility::options::VariantOption< O > , utility::options::VectorOption_T_< K, T >
• Size : utility::OrderedTuple< T >
• size() : utility::OrderedTuple< T >
• Size : utility::signals::BufferedSignalHub< ReturnType, Signal > , utility::signals::PausableSignalHub< ReturnType, Signal >
• size() : utility::signals::SignalHub< ReturnType, Signal >
• Size : utility::signals::SignalHub< ReturnType, Signal > , utility::signals::TokenHub< ReturnType, Signal >
• size() : utility::tag::Tag
• Size : utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< L, T, A > , utility::vectorL< L, bool, A >
• size() : VallReader
• size1() : ObjexxFCL::FArray1< T > , ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::KeyFArray1D< T >
• size2() : ObjexxFCL::FArray2< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::KeyFArray2D< T >
• size3() : ObjexxFCL::FArray3< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::KeyFArray3D< T >
• size4() : ObjexxFCL::FArray4< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::KeyFArray4D< T >
• size5() : ObjexxFCL::FArray5< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::KeyFArray5D< T >
• size6() : ObjexxFCL::FArray6< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::KeyFArray6D< T >
• size_ : basic::database::schema_generator::DbDataType , basic_string_view< Char > , detail::buffer< T > , detail::fill_t< Char > , numeric::ClusteringTreeNode , numeric::kdtree::KDTree , numeric::MathMatrix< T > , numeric::MathNTensor< T, N > , numeric::MathTensor< T > , numeric::MathVector< T > , ObjexxFCL::CArray< T > , ObjexxFCL::CArrayP< T > , ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray< T > , ObjexxFCL::FArraySection< T > , ObjexxFCL::IndexRange , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T > , utility::graph::Array0< T > , utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >
• size_bounded() : ObjexxFCL::FArray< T >
• size_constraint_string() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• size_dynamic() : ObjexxFCL::DynamicIndexRange
• size_iter_ : TwoChainInterface , TwoChainTenANeighbors
• size_msg() : utility::SimulateMPIMessage
• size_msg_ : utility::SimulateMPIMessage
• size_of() : ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::FArray< T > , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T >
• size_set() : ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::FArray< T >
• size_type : basic_format_args< Context > , boost::unordered_object_pool< T, UserAllocator > , numeric::interpolation::Histogram< X, Y > , ObjexxFCL::CArray< T > , ObjexxFCL::CArrayP< T > , ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< T > , ObjexxFCL::Cstring , ObjexxFCL::FArray1< T > , ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::FArray< T > , ObjexxFCL::FArraySection< T > , ObjexxFCL::Fstring , ObjexxFCL::IndexRange , ObjexxFCL::internal::ObserverGraph , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T > , utility::BitSet< B > , utility::BitVector< B > , utility::keys::AutoKey< O, S, C > , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::Key , utility::keys::KeyCount , utility::keys::KeyLookup< K > , utility::keys::KeyMapTraits< K, T > , utility::keys::KeySetTraits< K > , utility::keys::KeyVector< K, T > , utility::keys::KeyVectorTraits< K > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::keys::UserKey< O, S, C > , utility::options::Option , utility::options::VariantOption< O > , utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< L, T, A > , utility::vectorL< L, bool, A >
• size_unbounded() : ObjexxFCL::FArray< T >
• sized : myspace::DataStruct
• sizes_msg() : utility::SimulateMPIMessage
• sizes_msg_ : utility::SimulateMPIMessage
• SizeType : binder::vector_binder< T, Allocator > , rosetta_binders::utility_vector_binder< Vector, L, T, Allocator >
• Skip() : ObjexxFCL::format::Skip
• skip_ : LocalRmsd
• skip_hd_docking_ : HDdesignMover
• skip_line_number : binder::Config
• skip_minimize : erraser_option.erraser_option
• skip_repack() : CenRotDockingMover
• skip_scoring_ : MyScoreMover
• skip_single_res_minimize : erraser_option.erraser_option
• skipping_requested() : binder::Binder
• skipping_requested_ : binder::Binder
• slice_nearby : erraser_option.erraser_option
• slide_ : MySlideMover
• slide_axis() : Arch
• slide_into_contact() : CenRotDockingMover
• slide_non_ideal_helix() : apps::pilot::HelixMover
• slider_ : DockGlycansProtocol
• SlideTask() : SlideTask
• slope : numeric::interpolation::spline::LinearFunction
• sm_ : Foldptn
• small_divisor : detail::dragonbox::float_info< double > , detail::dragonbox::float_info< float >
• small_mover : SmallMoverBenchmark
• small_mover_ : DockGlycansProtocol , GlycomutagenesisProtocol
• small_vectorL() : utility::small_vectorL< T, L, BUFFER_SIZE >
• SmallKeyMap() : utility::keys::SmallKeyMap< K, T >
• SmallKeyVector() : utility::keys::SmallKeyVector< K, T >
• SmallMoverBenchmark() : SmallMoverBenchmark
• smart_held_classes : binder::Config
• smart_int() : kic_runner.ParseIterations
• SmartSEWINGTester() : apps::pilot::frankdt::SmartSEWINGTester
• smooth_trial_small_pack_ : SmoothFragRepackMover
• SmoothFragRepackMover() : SmoothFragRepackMover
• sms_ : SmoothFragRepackMover
• so3_ : numeric::fourier::SHT
• so3_correlate() : numeric::fourier::SHT
• SO3coeffs() : numeric::fourier::SO3coeffs
• so3CombineCoef() : numeric::fourier::SHT
• socket : PyMOL-Rosetta-relay-client.PR_UDPServer , PyMOL-RosettaServer.PR_UDPServer , pyrosetta.network.rosetta_udp_to_tcp_bridge.PR_UDPServer , pyrosetta.PyMOLRosettaServer.PR_UDPServer
• socket_address : pyrosetta.distributed.cluster.logging_filters.SetSocketAddressFilter , pyrosetta.distributed.cluster.logging_filters.SocketAddressFilter
• socket_listener : pyrosetta.distributed.cluster.logging_support.LoggingSupport
• socket_listener_address : pyrosetta.distributed.cluster.logging_listeners.SocketListener
• SocketSP : ui::network::BowmanThread
• SocketUP : ui::network::BowmanThread
• soft_clash_percent_ : GlycanClashCheckMover
• softrep : DesignOpts
• softrep_min_mover_ : zinc1_homodimer_design
• softrep_sym_scorefxn_ : zinc1_homodimer_design
• sol_mult_ : DockGlycansProtocol
• Solve() : Solver , Solver_NU
• Solver() : Solver
• Solver_NU() : Solver_NU
• SomeThing() : SomeThing
• sort() : utility::keys::ClassKeyVector< K, T, C >
• sort_binders() : binder::Context
• sort_myself() : HeapContainer< T, Comparator >
• sorted_values() : numeric::kdtree::KDPointList
• source_ : ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6P< T >
• source_id_is_mapped() : utility::subset_mapping
• source_residues : pyrosetta.protocols.structure_search.StructureSearchManager
• source_size() : utility::subset_mapping
• Sources : ObjexxFCL::internal::ObserverGraph
• sources_ : ObjexxFCL::internal::ObserverGraph
• space() : utility::json_spirit::Generator< Value_type, Ostream_type >
• space_prefixed() : utility::options::OptionCollection
• Spacegroup() : Spacegroup
• SpacegroupHit() : SpacegroupHit
• spacing : WorkDat
• sparta_ : SpartaSuperDeviationMover
• sparta_scores_ : SpartaSuperDeviationMover
• SpartaSuperDeviationMover() : SpartaSuperDeviationMover
• species_name_ : GlycomutagenesisProtocol
• specification_received() : ui::network::Bowman , ui::network::BowmanThread
• SpecificJumpSetup() : protocols::jumping::SpecificJumpSetup
• specified_check() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• specified_report() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• specs() : detail::arg_formatter_base< OutputIt, Char, ErrorHandler > , detail::format_part< Char >::replacement , detail::int_writer< OutputIt, Char, UInt > , formatter< std::chrono::duration< Rep, Period >, Char >
• specs_ : detail::arg_formatter_base< OutputIt, Char, ErrorHandler > , detail::dynamic_specs_handler< ParseContext > , detail::printf_width_handler< Char > , detail::specs_setter< Char > , dynamic_formatter< Char > , formatter< bytes > , formatter< T, Char, enable_if_t< detail::type_constant< T, Char >::value !=detail::type::custom_type > >
• specs_checker() : detail::specs_checker< Handler >
• specs_handler() : detail::specs_handler< ParseContext, Context >
• specs_setter() : detail::specs_setter< Char >
• sph_rank : FragID
• sph_standardize() : numeric::fourier::SHT
• SphereNode() : SphereNode
• SphereSample() : SphereSample
• SphereSampler() : SphereSampler
• sphericalVector() : numeric::sphericalVector< T >
• spline : numeric::interpolation::Histogram< X, Y >
• spline_interpolator_ : numeric::interpolation::Histogram< X, Y >
• SplineGenerator() : numeric::interpolation::spline::SplineGenerator
• SplineParameters() : numeric::SplineParameters
• split_axis() : numeric::kdtree::KDNode
• split_axis_ : numeric::kdtree::KDNode
• split_citations() : basic::citation_manager::CitationManager
• split_max() : numeric::DietNode< T >
• split_min() : numeric::DietNode< T >
• split_tuple() : numeric::DietNode< T >::split_tuple
• sql_command_ : basic::resource_manager::locator::DatabaseResourceLocator
• sqlite3 : utility::sql_database::DatabaseMode
• sqp : MatchAlignInfo
• sqr() : MatchSet , numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::CubicSpline
• sqrt_2pi() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• sqrtTwoPi : DisulfideBondEnergy
• square() : detail::bigint , numeric::xyzTriple< T > , numeric::xyzVector< T > , ObjexxFCL::CArray< T > , ObjexxFCL::CArrayP< T > , ObjexxFCL::ChunkVector< T > , ObjexxFCL::FArray2< T >
• square_norm() : numeric::MathVector< T >
• SquarerootExpression() : numeric::expression_parser::SquarerootExpression
• src() : utility::SimulateMPIMessage
• src_ : utility::SimulateMPIMessage
• src_2_dst_ : utility::subset_mapping
• ss : ConstraintConfig , PoseWrap
• ss1 : DisulfEpos
• ss2 : DisulfEpos
• ss_ : PoseWrap , SecondaryStructureChunk
• ss_chunks_pose_ : apps::pilot::CustomStarTreeMover , apps::pilot::SampleSecondaryStructureAlignmentMover
• ss_chunks_target_ : ChallengeMover
• ss_def_ : protocols::abinitio::JumpSpecificAbrelax , protocols::jumping::LibraryJumpSetup , protocols::jumping::SpecificJumpSetup
• ss_E_counts_ : JDmover
• ss_H_counts_ : JDmover
• SS_Info2 : CountContact , Foldptn , PairDistance , PickBAB
• SS_Info2_OP : Foldptn , PairDistance , PickBAB
• ss_info_ : DomainDescription
• ss_L_counts_ : JDmover
• ss_match() : DomainDescription
• ss_only_ : CrystFFTDock
• ss_optional : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• ss_pick_one_opt : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• ss_pick_one_req : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• ss_pref_ : PoseWrap
• ss_repeatable : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• ss_required : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• ss_suff_ : PoseWrap
• ssamp() : SlideTask
• ssamp_ : SlideTask
• sse_dist : PickSSE
• sse_end : PickSSE
• sse_start : PickSSE
• SSE_topo_ : MPFoldingMover
• sse_type : PickSSE
• ssinfo_ : Foldptn , PairDistance , PickBAB
• ssinput_ : Foldptn , PairDistance , PickBAB
• SSize : numeric::geometry::hashing::SixDOffsetTree , utility::fixedsizearray0< T, S > , utility::fixedsizearray1< T, S > , utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< L, T, A > , utility::vectorL< L, bool, A >
• ssize_type : utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< L, T, A > , utility::vectorL< L, bool, A >
• SSizeType : rosetta_binders::utility_vector_binder< Vector, L, T, Allocator >
• SSM_energies() : SSM_energies
• ssmap : ConstraintConfig
• ssstr() : ConstraintConfig
• stack_ : binder::IncludeSet , utility::json_spirit::Semantic_actions< Value_type, Iter_type >
• StackType : binder::IncludeSet
• Stage1Sampler() : protocols::abinitio::Stage1Sampler
• standard : utility::sql_database::TransactionMode
• standard_RG() : numeric::random::standard_RG
• standard_width() : ObjexxFCL::TypeTraits< T > , ObjexxFCL::TypeTraits< double > , ObjexxFCL::TypeTraits< float > , ObjexxFCL::TypeTraits< int > , ObjexxFCL::TypeTraits< long double > , ObjexxFCL::TypeTraits< long int > , ObjexxFCL::TypeTraits< short int > , ObjexxFCL::TypeTraits< unsigned int > , ObjexxFCL::TypeTraits< unsigned long int > , ObjexxFCL::TypeTraits< unsigned short int >
• standardise_filename() : utility::Inline_File_Provider
• Star() : ObjexxFCL::Star
• start : enumerate_junctions.Component
• Start() : GetURLHandler
• start() : numeric::MultiDimensionalHistogram , pyrosetta.distributed.cluster.logging_listeners.SocketListener , utility::json_spirit::Json_grammer< Value_type, Iter_type >::definition< ScannerT >
• start_ : BBMover , Domain , FloppyTailMover , numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::CubicSpline , numeric::interpolation::spline::PolycubicSpline< N > , numeric::interpolation::spline::PolycubicSpline< 1 > , numeric::interpolation::spline::PolycubicSpline< 2 > , numeric::interpolation::spline::TricubicSpline , numeric::MultiDimensionalHistogram , SimpleBBMover
• start_clock_ : basic::DynamicProfileThis
• start_coord_csts_ : protocols::antibody::design::AntibodyDesignMoverGenerator
• start_decoy() : pyrosetta.toolbox.py_jobdistributor.PyJobDistributor
• start_doc() : basic::Emitter , basic::JsonEmitter , basic::YamlEmitter
• start_from_poly_ala_ : ComputeProfileMover
• start_list() : basic::Emitter
• start_map() : basic::Emitter
• start_pose : DockingBenchmark< dock, TScale > , MinimizerBenchmark< sft, TScale >
• start_raw() : basic::Emitter , basic::JsonEmitter , basic::YamlEmitter
• start_res_list_ : ExposedStrandMover
• start_seqpos() : SecondaryStructureChunk
• start_server() : PyMOL-Rosetta-relay-client.SecretInputDialog
• start_time : pyrosetta.distributed.utility.log.ProgressLogger , schema.Job
• start_time_ : TCDock
• start_vertex() : RerootRestypeVisitor
• started() : ui::task::Functor
• started_ : Bola
• starting_centroid_pose_ : zinc1_homodimer_design
• starting_fullatom_pose_ : zinc1_homodimer_design
• starting_monomer_pose_ : zinc1_homodimer_design
• starting_pose_ : HbondZinc , HbondZincBackbone , UBQ_E2Mover , UBQ_GTPase_disulfide_Mover
• STARTING_RAMP_DOWN_FACTOR : DockGlycansProtocol
• STARTING_RAMP_UP_FACTOR : DockGlycansProtocol
• startingPose_ : protocols::abinitio::ApplicationContext
• startres : HelixHit
• starts_ : MyRotMover
• State : ObjexxFCL::FArrayInitializer< T, Array >
• state() : ui::task::Functor
• State : ui::task::Functor
• state : ui::task::ProjectTasksModel::Row
• State : ui::task::Task
• state() : ui::task::Task
• State : utility::options::Option
• state_ : ObjexxFCL::FArrayInitializer< T, Array > , StatefulMover , ui::task::Functor , ui::task::Task , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• state_changed() : ui::task::Task
• StatefulMover() : StatefulMover
• states() : numeric::fourier::kiss_fftnd_state
• states_ : numeric::fourier::kiss_fftnd_state
• static_int_ : utility::py::PyExitCallback
• static_public_Integral : Consts
• static_string_ : utility::py::PyExitCallback
• static_string_const_ : utility::py::PyExitCallback
• StaticIndexRange : ObjexxFCL::IndexRange , ObjexxFCL::StaticIndexRange
• status() : numeric::RocPoint
• status_ : numeric::RocPoint
• status_code() : ui::task::FunctorNetworkCall , ui::task::NetworkCall
• status_code_ : ui::task::NetworkCall
• status_list : job_manager.StatusWindow
• status_window : job_manager.CommandRunner , job_manager.CommandWindow
• stb_ : FunGroupTK , RotSel
• std_manipulator : utility::io::irstream , utility::io::izstream
• stdevNeg : DisulfideBondEnergy
• stdevPos : DisulfideBondEnergy
• steal_torsion_from_template() : apps::pilot::AlignChunkMover
• steepness_ : ScoreFragmentSetMover
• stem_size() : protocols::antibody::design::AntibodyDesignMoverGenerator
• step_ : numeric::interpolation::Histogram< X, Y > , RotateSAXS
• step_size() : numeric::interpolation::Histogram< X, Y >
• stepbound : numeric::nls::lm_control_struct
• StepWiseJobQueen() : StepWiseJobQueen
• StepwiseTorsionMover() : StepwiseTorsionMover
• steric_fusion_scan() : apps::pilot::frankdt::steric_fusion_scan
• stop() : pyrosetta.distributed.cluster.logging_listeners.SocketListener
• stop_ : BBMover , FloppyTailMover , SimpleBBMover
• stop_level_ : utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >
• stop_time : schema.Job
• stopres : HelixHit
• stops_ : MyRotMover
• store() : boost::unordered_object_pool< T, UserAllocator >
• store_ : basic_memory_buffer< T, SIZE, Allocator >
• store_gdt0() : myspace::Evaluator
• store_pdbs_ : MakeSegmentFileMPI
• stored_type : dynamic_format_arg_store< Context >
• str() : basic::datacache::CacheableString , CCParam , detail::format_part< Char >::value , detail::utf8_to_utf16 , format_int , pyrosetta.distributed.cluster.io.IO
• str_ : basic::datacache::CacheableString , format_int , ObjexxFCL::Cstring , ObjexxFCL::Fstring
• strand_def_vector_ : ExposedStrandMover
• strand_pose_nums_ : ExposedStrandMover
• StrandCOP : PickBAB
• StrandPairingSet : Foldptn , PickBAB
• StrandPairingSetOP : Foldptn , PickBAB
• stream() : basic::resource_manager::locator::FileStream , basic::resource_manager::locator::NullStream , basic::resource_manager::locator::StringResourceStream , basic::resource_manager::ResourceStream , utility::io::icstream , utility::io::irstream , utility::io::izstream , utility::io::ocstream , utility::io::orstream , utility::io::ozstream
• stream_ : basic::resource_manager::locator::FileStream , basic::resource_manager::locator::NullStream , basic::resource_manager::locator::StringResourceStream
• Stream_reader() : utility::json_spirit::Stream_reader< Istream_type, Value_type >
• Stream_reader_thrower() : utility::json_spirit::Stream_reader_thrower< Istream_type, Value_type >
• stream_setup() : utility::options::RealOption , utility::options::RealVectorOption , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• strict() : utility::Bound< T >
• Strict() : utility::Bound< T >
• strict_ : MetalSiteFinderMover , utility::Bound< T >
• strict_lower() : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• strict_upper() : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• string : binder::Binder , binder::Config , binder::Context
• String : BUNS_Output
• string : detail::value< Context > , pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor , pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor
• string_ : utility::json_spirit::Json_grammer< Value_type, Iter_type >::definition< ScannerT >
• string_msg() : utility::SimulateMPIMessage
• string_msg_ : utility::SimulateMPIMessage
• string_of() : ObjexxFCL::Fstring
• String_type : utility::json_spirit::Config_map< String > , utility::json_spirit::Config_vector< String > , utility::json_spirit::Generator< Value_type, Ostream_type > , utility::json_spirit::Pair_impl< Config > , utility::json_spirit::Semantic_actions< Value_type, Iter_type > , utility::json_spirit::Value_impl< Config >
• string_value_ : utility::py::Base
• string_vectors_ : utility::options::OptionCollection
• Stringifier() : utility_exit_detail::Stringifier
• StringOption() : utility::options::StringOption
• StringOptionKey() : utility::options::StringOptionKey
• StringResourceStream() : basic::resource_manager::locator::StringResourceStream
• Strings : utility::options::OptionCollection
• strings_ : utility::options::OptionCollection
• StringVectorOption() : utility::options::StringVectorOption
• StringVectorOptionKey() : utility::options::StringVectorOptionKey
• StringVectors : utility::options::OptionCollection
• Stringy() : utility_exit_detail::Stringy
• strip() : ObjexxFCL::Fstring
• strip_whitespace() : ObjexxFCL::Fstring
• stripped() : ObjexxFCL::Fstring
• stripped_whitespace() : ObjexxFCL::Fstring , utility::keys::KeyLookup< K >
• StrongT() : utility::StrongT< T, Key >
• struct_filename_ : ExposedStrandMover
• structures_ : SetOfClusters
• stub : Hit
• stupid_ddg() : HubDenovo
• style : pyrosetta.distributed.viewer.modules.setStyle
• sub_ : ObjexxFCL::Fstring
• subelement_behavior() : utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl
• subelement_behavior_ : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• subelement_sets_ : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• subelements_ : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• SubelementSets : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• submit() : ui::task::Task , ui::task::TaskSyncer_NodeStrategy , ui::task::TaskSyncer_TaskStrategy
• submitted() : ui::task::Task , ui::task::TaskSyncer_NodeStrategy
• subscribe() : ui::task::Task , ui::task::TaskSyncer_NodeStrategy , ui::task::TaskSyncer_TaskStrategy , ui::task::Updater
• subscribers_ : ui::task::Updater
• subset_mapping() : utility::subset_mapping
• substate() : numeric::fourier::kiss_dct_state , numeric::fourier::kiss_fftr_state , numeric::fourier::kiss_fftsplit_state
• substate_ : numeric::fourier::kiss_dct_state , numeric::fourier::kiss_fftr_state , numeric::fourier::kiss_fftsplit_state
• substitution_group() : utility::tag::XMLSchemaElement
• substitution_group_ : utility::tag::XMLSchemaElement
• substructure_id : node_data
• subsub_ends_ : PoseWrap
• subsub_fixed_begin : PoseWrap
• subsub_fixed_end : PoseWrap
• subsub_starts_ : PoseWrap
• subtract : numeric::sphericalVector< T > , numeric::xyzTriple< T > , numeric::xyzVector< T >
• subtract_aligned() : detail::bigint
• subtract_bigits() : detail::bigint
• subtract_diagonal() : numeric::xyzMatrix< T >
• SubtractExpression() : numeric::expression_parser::SubtractExpression
• subunit_tolerance_ : DetectSymmetry
• subwidgets_ : ui::ui_protocols::helical_bundle::HelicalBundleDialogueWidget
• suffix() : utility::options::OptionCollection
• sulphur_bond_check() : BuriedUnsatPolarsFinder
• sum() : numeric::MathNTensor< T, N > , numeric::MathVector< T >
• sum_radius() : numeric::geometry::hashing::SixDOffsetTree
• sum_to() : Tensor
• Super : basic::datacache::BasicDataCache , basic::datacache::DataCache< Data > , ObjexxFCL::DimensionExpressionCon , ObjexxFCL::DimensionExpressionCube , ObjexxFCL::DimensionExpressionDiv , ObjexxFCL::DimensionExpressionMax , ObjexxFCL::DimensionExpressionMin , ObjexxFCL::DimensionExpressionMul , ObjexxFCL::DimensionExpressionPow , ObjexxFCL::DimensionExpressionRef , ObjexxFCL::DimensionExpressionSquare , ObjexxFCL::DimensionExpressionSub , ObjexxFCL::DimensionExpressionSum , ObjexxFCL::DynamicIndexRange , ObjexxFCL::FArray1< T > , ObjexxFCL::FArray1A< T > , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray1P< T > , ObjexxFCL::FArray2< T > , ObjexxFCL::FArray2A< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray2P< T > , ObjexxFCL::FArray3< T > , ObjexxFCL::FArray3A< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray3P< T > , ObjexxFCL::FArray4< T > , ObjexxFCL::FArray4A< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray4P< T > , ObjexxFCL::FArray5< T > , ObjexxFCL::FArray5A< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray5P< T > , ObjexxFCL::FArray6< T > , ObjexxFCL::FArray6A< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::FArray6P< T > , ObjexxFCL::Fsubstring , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T > , ObjexxFCL::StaticIndexRange
• super : utility::deep_copy_vector1< T >
• Super : utility::keys::AutoKey< O, S, C > , utility::keys::UserKey< O, S, C > , utility::options::AnyOption< T > , utility::options::AnyOptionKey , utility::options::AnyVectorOption< T > , utility::options::AnyVectorOptionKey , utility::options::BooleanOption , utility::options::BooleanOptionKey , utility::options::BooleanVectorOption , utility::options::BooleanVectorOptionKey , utility::options::FileOption , utility::options::FileOptionKey , utility::options::FileVectorOption , utility::options::FileVectorOptionKey , utility::options::IntegerOption , utility::options::IntegerOptionKey , utility::options::IntegerVectorOption , utility::options::IntegerVectorOptionKey , utility::options::OptionKey , utility::options::PathOption , utility::options::PathOptionKey , utility::options::PathVectorOption , utility::options::PathVectorOptionKey , utility::options::RealOption , utility::options::RealOptionKey , utility::options::RealVectorOption , utility::options::RealVectorOptionKey , utility::options::ResidueChainVectorOption , utility::options::ResidueChainVectorOptionKey , utility::options::ScalarOption , utility::options::ScalarOption_T_< K, T > , utility::options::ScalarOptionKey , utility::options::StringOption , utility::options::StringOptionKey , utility::options::StringVectorOption , utility::options::StringVectorOptionKey , utility::options::VectorOption , utility::options::VectorOption_T_< K, T > , utility::options::VectorOptionKey , utility::signals::BufferedSignalHub< ReturnType, Signal > , utility::signals::LinkUnit , utility::signals::PausableSignalHub< ReturnType, Signal > , utility::signals::TokenHub< ReturnType, Signal >
• super : utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< L, T, A > , utility::vectorL< L, bool, A >
• super_mute() : basic::Tracer , basic::TracerImpl
• super_mute_() : basic::TracerImpl
• super_twiddles() : numeric::fourier::kiss_dct_state , numeric::fourier::kiss_fftr_state
• super_twiddles_ : numeric::fourier::kiss_dct_state , numeric::fourier::kiss_fftr_state
• SuperDeviationMover() : SuperDeviationMover
• superimpose_ : SuperDeviationMover
• superimpose_antigen() : abbinding
• suppress_CSI_codes() : utility::CSI_Sequence
• suppress_CSI_seq() : utility::CSI_Sequence
• surface_ : Sasa
• surface_type : pyrosetta.distributed.viewer.modules.setSurface
• surname() : basic::citation_manager::AuthorNames
• surname_ : basic::citation_manager::AuthorNames
• SV : svm_model
• sv_coef : svm_model
• sv_indices : svm_model
• svbksb() : basic::svd::SVD_Solver
• SVC_Q() : SVC_Q
• SVD_Solver() : basic::svd::SVD_Solver
• svdcmp() : basic::svd::SVD_Solver
• svm_model_ : utility::libsvm::Svm_rosetta
• Svm_node_rosetta() : utility::libsvm::Svm_node_rosetta
• Svm_rosetta() : utility::libsvm::Svm_rosetta
• svm_type : svm_parameter
• SVR_Q() : SVR_Q
• swap : DesignGlycansProtocol , numeric::Quaternion< T > , ObjexxFCL::CArray< T > , ObjexxFCL::CArrayP< T > , ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< T > , ObjexxFCL::Cstring , ObjexxFCL::Dimension , ObjexxFCL::DynamicIndexRange , ObjexxFCL::FArray1D< T > , ObjexxFCL::FArray2D< T > , ObjexxFCL::FArray3D< T > , ObjexxFCL::FArray4D< T > , ObjexxFCL::FArray5D< T > , ObjexxFCL::FArray6D< T > , ObjexxFCL::IndexRange , ObjexxFCL::KeyFArray1D< T > , ObjexxFCL::KeyFArray2D< T > , ObjexxFCL::KeyFArray3D< T > , ObjexxFCL::KeyFArray4D< T > , ObjexxFCL::KeyFArray5D< T > , ObjexxFCL::KeyFArray6D< T > , ObjexxFCL::StaticIndexRange , utility::BitSet< B > , utility::BitVector< B > , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::pointer::DeepCopyOP< T > , utility::vectorL< L, T, A > , utility::vectorL< L, bool, A >
• swap1DB() : ObjexxFCL::FArray1< T >
• swap2DB() : ObjexxFCL::FArray2< T >
• swap3DB() : ObjexxFCL::FArray3< T >
• swap4DB() : ObjexxFCL::FArray4< T >
• swap5DB() : ObjexxFCL::FArray5< T >
• swap6DB() : ObjexxFCL::FArray6< T >
• swap_axis() : TCDock
• swap_axis_rotation() : TCDock
• swap_cols() : numeric::MathMatrix< T >
• swap_index() : Cache , Kernel , ONE_CLASS_Q , QMatrix , Solver , SVC_Q , SVR_Q
• swap_jobs() : ui::task::Task
• swap_no_notify() : ObjexxFCL::Dimension , ObjexxFCL::DynamicIndexRange
• swap_rows() : numeric::MathMatrix< T >
• swapB() : ObjexxFCL::FArray< T >
• SwapElementsMover1() : SwapElementsMover1
• SwapElementsMover2() : SwapElementsMover2
• switch_to_cen() : PoseWrap
• switch_to_fa() : PoseWrap
• sym : Hit
• sym_minmover_ : zinc2_homodimer_design
• sym_minmover_bb_ : zinc2_homodimer_design
• sym_minmover_sc_ : zinc2_homodimer_design
• sym_pack_mover_ : zinc1_homodimer_design , zinc2_homodimer_design
• sym_repack_minimize() : HDdesignMover
• sym_rottrials_mover_ : zinc1_homodimer_design
• sym_scorefxn_ : zinc1_homodimer_design
• SymFixbbMover() : SymFixbbMover
• symhash64() : numeric::xyzTransform< T >
• symjumps : MyRotMover , MyTransMover
• symm_data : PoseWrap
• symm_data_full : PoseWrap
• symm_min_ : SwapElementsMover2
• symmetric() : ObjexxFCL::FArray2< T >
• symmop() : Spacegroup
• symmops : pointGroupHit , Spacegroup
• symmops_ : Spacegroup
• symop_expansion : fiberHit
• symop_fiber : fiberHit
• SymRBMover() : SymRBMover
• symtype_ : TCDock
• sync() : basic::basic_otstream< CharT, Traits >::basic_tstringbuf< _CharT, _Traits > , utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT > , zlib_stream::basic_zip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
• synced() : ui::task::Node
• syncer_ : ui::task::Task
• syncing() : ui::task::Node , ui::task::Task
• syncing_ : ui::task::Node
• syncing_progress() : ui::task::Task , ui::task::TaskSyncer_NodeStrategy , ui::task::TaskSyncer_TaskStrategy
• syncing_progress_ : ui::task::Task
• syncing_progress_advance() : ui::task::Task
• system_error() : system_error
• system_info : pyrosetta.distributed.cluster.core.PyRosettaCluster