- c -

c : basic::sampling::orientations::Triple
C : binder::ClassBinder , binder::ConstructorBindingInfo
c : outer::inner3 , S
C : svm_parameter
c0 : numeric::CubicPolynomial
c1 : DisulfEpos , Hit , numeric::CubicPolynomial
c11 : Hit
c12 : Hit
c2 : DisulfEpos , Hit , numeric::CubicPolynomial
c21 : Hit
c22 : Hit
c2f_ : Spacegroup
c2i_ : CrystFFTDock
c3 : Hit , numeric::CubicPolynomial
c_ : Spacegroup
c_clashdist_ : CrystFFTDock
C_not_binded : S
c_not_binded : S::FL_not_binded
c_str_ : ObjexxFCL::Fstring
c_term : enumerate_junctions.Junction
c_term_attach_length : enumerate_junctions.Component
c_term_dhr : enumerate_junctions.Component
c_term_res_trim : enumerate_junctions.Component
c_term_seq : enumerate_junctions.Component
ca1 : DisulfEpos
ca2 : DisulfEpos
ca_clashdist_ : CrystFFTDock
cacbcb_angle_1_ : PairScore
cacbcb_angle_1_score_ : PairScore
cacbcb_angle_2_ : PairScore
cacbcb_angle_2_score_ : PairScore
cacbcbca_dihedral_ : PairScore
cacbcbca_dihedral_score_ : PairScore
cache : ONE_CLASS_Q , SVC_Q , SVR_Q
cache_bits : detail::dragonbox::float_info< double > , detail::dragonbox::float_info< float >
cache_size : svm_parameter
cached_value_ : utility::options::FileOption
CacheEdges_ : numeric::VoxelGrid< T >
calcs_ready_ : CalcsTestMover
callback_ : ui::task::FunctorNetworkCall
callback_factory_ : nacl_rosetta::RosettaInstance
cancel : PyMOL-Rosetta-relay-client.SecretInputDialog
capacity_ : detail::buffer< T > , numeric::random::WeightedReservoirSampler< T > , ObjexxFCL::Chunk< T >
cartmin_ : protocols::antibody::design::AntibodyDesignMoverGenerator
cartoon : pyrosetta.distributed.viewer.modules.setStyle
cartoon_color : pyrosetta.distributed.viewer.modules.setStyle
cas_ : CAtrace
case_fc_lower_threshold : detail::dragonbox::float_info< double > , detail::dragonbox::float_info< float >
case_fc_pm_half_lower_threshold : detail::dragonbox::float_info< double > , detail::dragonbox::float_info< float >
case_fc_pm_half_upper_threshold : detail::dragonbox::float_info< double > , detail::dragonbox::float_info< float >
case_fc_upper_threshold : detail::dragonbox::float_info< double > , detail::dragonbox::float_info< float >
case_shorter_interval_left_endpoint_lower_threshold : detail::dragonbox::float_info< double > , detail::dragonbox::float_info< float >
case_shorter_interval_left_endpoint_upper_threshold : detail::dragonbox::float_info< double > , detail::dragonbox::float_info< float >
category_ : utility::tag::XMLSchemaElement
cb_ : RotSel
cb_clashdist_ : CrystFFTDock
cb_overlap_ : SingleInterface
cb_score_factor_ : PairScore
cbc : Hit
cbcb_distance_score_ : PairScore
cbcb_distance_sq_ : PairScore
cc_ : Spacegroup
cc_factory_ : GetURLHandler
cdr_definition_ : protocols::antibody::task_operations::AddFrameworkProfilesOperation
cdr_options_ : myspace::GraftTester
cdr_set_ : myspace::GraftTester
cdrs_ : myspace::GraftTester
cen : HelixHit , Hit , KRSQuery , MatchAlignInfo
cen_pose_ : DomainAssemblerNDocker , TryScoreFilter
cen_residue_set_ : PoseWrap
cenmin : HubDenovo
cenres : HelixHit
center_ : FragInfo
centroid_ : ScoreEachBenchmark , zinc1_homodimer_design
centroid_distance_score_ : PairScore
centroid_distance_sq_ : PairScore
centroid_score : Dock
centroid_scorefunction_ : FloppyTailMover
centroid_scorefxn_for_ddG_calc_ : zinc1_homodimer_design
cfg : HubDenovo
cfg_nd_ : numeric::fourier::kiss_fftndr_state
cfg_r_ : numeric::fourier::kiss_fftndr_state
ch1 : Hit
ch1_begin_ : TwoChainInterface , TwoChainTenANeighbors
ch1_end_ : TwoChainInterface , TwoChainTenANeighbors
ch2 : Hit
ch2_begin_ : TwoChainInterface , TwoChainTenANeighbors
ch2_end_ : TwoChainInterface , TwoChainTenANeighbors
chain : enumerate_junctions.Component , enumerate_junctions.DHR , enumerate_junctions.Junction , HelixHit
chain1_interface_ : TwoChainInterface , TwoChainTenANeighbors
chain1_letter_ : TwoChainInterface , TwoChainTenANeighbors
chain1_number_ : TwoChainInterface , TwoChainTenANeighbors
chain2_interface_ : TwoChainInterface , TwoChainTenANeighbors
chain2_letter_ : TwoChainInterface , TwoChainTenANeighbors
chain2_number_ : TwoChainInterface , TwoChainTenANeighbors
chain_ : sidechain_cst_3.Residue
chain_char_ : ExposedStrandMover
chain_nums_ : GlycanClashCheckMover
chain_resnums_ : GlycanClashCheckMover
chainA_ : PairScore
chainA_motif_score : Dock
chainB_ : PairScore
chainbreaks_ : PoseWrap
chainlen : HelixHit
chains_ : GlycanClashCheckMover , HPatchByChainNPDCalculator , MPInterfaceStatistics
channel_ : basic::Tracer , basic::TracerImpl , basic::TracerImpl::TracerProxyImpl
channel_color_ : basic::Tracer , basic::TracerImpl
channel_id_ : utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
channel_name_color_ : basic::Tracer , basic::TracerImpl
char_buffer_p_ : utility::io::ozstream
char_msg_ : utility::SimulateMPIMessage
char_value : detail::value< Context >
check_rama_ : ClosureMover
check_rmsd_ : ExposedStrandMover
checker_ : detail::specs_checker< Handler >
checksum : utility::io::TarFileHeader
chi1 : Hit
chi11 : DsfHit
chi12 : DsfHit
chi2 : Hit
chi21 : DsfHit
chi22 : DsfHit
chi_angles : local::HbondInfo
chi_cut : ElecDensMinPackMinReporter
child_ : numeric::expression_parser::ArithmeticASTFactor
children_ : numeric::expression_parser::ArithmeticASTAndClause , numeric::expression_parser::ArithmeticASTExpression , numeric::expression_parser::ArithmeticASTFunction , numeric::expression_parser::ArithmeticASTOrClause , numeric::expression_parser::ArithmeticASTRestAndClause , numeric::expression_parser::ArithmeticASTRestExpression , numeric::expression_parser::ArithmeticASTRestOrClause , numeric::expression_parser::ArithmeticASTRestTerm , numeric::expression_parser::ArithmeticASTTerm , SphereNode , utility::tag::XMLSchemaRepeatableCTNode
chis : myspace::DataStruct
chunk_exponent_ : ObjexxFCL::ChunkVector< T >
chunk_mask_ : ObjexxFCL::ChunkVector< T >
chunk_size_ : ObjexxFCL::ChunkVector< T > , utility::sql_database::session
chunks_ : ObjexxFCL::ChunkVector< T >
citation_list_ : basic::citation_manager::CitationManager
citations_ : basic::citation_manager::CitationCollection
clash : KRSQuery
clash2b : FragmentAssemblyMover
clash_crosslink_ : Bola
clash_data : calculation_data_for_one_block_pair
clash_data_table : calculation_data_for_one_block_pair
clash_dist_ : ScoreFragmentSetMover
clash_distance_ : SwapElementsMover1 , SwapElementsMover2
clash_intralink_ : Bola
clash_roselink_ : Bola
clash_roserose_ : Bola
clash_wt_ : FragmentAssemblyMover
clashmap1_ : TCDock
clashmap2_ : TCDock
class_includes_ : binder::Config
class_qualified_name : binder::ConstructorBindingInfo
classes_to_bind : binder::Config
classes_to_skip : binder::Config
client : pyrosetta.distributed.cluster.core.PyRosettaCluster , pyrosetta.tests.distributed.test_dask.TestDaskDistribution
clients : pyrosetta.distributed.cluster.core.PyRosettaCluster , pyrosetta.tests.distributed.cluster.test_smoke.TestBase , ui::network::B
clients_dict : pyrosetta.distributed.cluster.core.PyRosettaCluster
close : pyrosetta.distributed.utility.log.LoggingContext
close2b : FragmentAssemblyMover
close_wt_ : FragmentAssemblyMover
closed_pose : Dock
closure_move : SamplingManager
closure_move_ : ClosureMover
closure_mover : SamplingManager
closure_ratio : SamplingManager
cluster_cutoff_ : CrystFFTDock
cluster_RMSD : erraser_option.erraser_option
clusternumber : EnergyAndFilename , PoseAndData
cmd_line_operation_ : protocols::antibody::design::AntibodyDesignMoverGenerator
cmd_opts : mutant_modeler.MutantModeler
cmp1_ : TCDock
cmp1axs_ : TCDock
cmp1cbneg_ : TCDock
cmp1cbpos_ : TCDock
cmp1cbs_ : TCDock
cmp1dianeg_ : TCDock
cmp1diapos_ : TCDock
cmp1dsneg_ : TCDock
cmp1dspos_ : TCDock
cmp1in_ : TCDock
cmp1mnneg_ : TCDock
cmp1mnpos_ : TCDock
cmp1name_ : TCDock
cmp1nangle_ : TCDock
cmp1nsub_ : TCDock
cmp1olig_ : TCDock
cmp1pts_ : TCDock
cmp1scale_ : TCDock
cmp1type_ : TCDock
cmp1wtmap_ : TCDock
cmp1wts_ : TCDock
cmp2_ : TCDock
cmp2axs_ : TCDock
cmp2cbneg_ : TCDock
cmp2cbpos_ : TCDock
cmp2cbs_ : TCDock
cmp2dianeg_ : TCDock
cmp2diapos_ : TCDock
cmp2dsneg_ : TCDock
cmp2dspos_ : TCDock
cmp2in_ : TCDock
cmp2mnneg_ : TCDock
cmp2mnpos_ : TCDock
cmp2name_ : TCDock
cmp2nangle_ : TCDock
cmp2nsub_ : TCDock
cmp2olig_ : TCDock
cmp2pts_ : TCDock
cmp2scale_ : TCDock
cmp2type_ : TCDock
cmp2wtmap_ : TCDock
cmp2wts_ : TCDock
Cn : Solver
co_authors_ : basic::citation_manager::Citation
code_ : binder::Binder , utility::keys::AutoKey< O, S, C > , utility::keys::UserKey< O, S, C >
coef : numeric::kinematic_closure::p
coef0 : Kernel , svm_parameter
coefficients_ : numeric::Polynomial_1d
cofactors : arls_impl.DockingCase
cognate_ : abbinding
cognate_partner_info_ : abbinding
cognate_pdb_ : abbinding
coheap_ : utility::heap
color : pyrosetta.distributed.viewer.modules.setBackgroundColor , pyrosetta.distributed.viewer.modules.setDisulfides , pyrosetta.distributed.viewer.modules.setHydrogenBonds , pyrosetta.distributed.viewer.modules.setHydrogens , pyrosetta.distributed.viewer.modules.setSurface , test.Workshop9_my_shapes.MyShape
color_mode_ : ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
colorscheme : pyrosetta.distributed.viewer.modules.setStyle , pyrosetta.distributed.viewer.modules.setSurface
column_ : utility::json_spirit::Error_position
column_index_map_ : basic::database::insert_statement_generator::InsertGenerator
column_list_ : basic::database::insert_statement_generator::InsertGenerator
column_name_ : basic::database::insert_statement_generator::RowDataBase
column_separator_ : basic::resource_manager::locator::DatabaseResourceLocator
columns_ : basic::database::schema_generator::Constraint , basic::database::schema_generator::ForeignKey , basic::database::schema_generator::Index , basic::database::schema_generator::PrimaryKey , basic::database::schema_generator::Schema
combine_score : Combine_Tags_Info
combo : job_manager.SaveMovie
combo_ : CenRotDockingMover
combo_smooth_ : SmoothFragRepackMover
comjump : MyTransMover
comjumps : MyRotMover
command : job_manager.CommandLauncher , job_manager.CommandRunner , job_manager.CorrelationTime , job_manager.DeleteJob , job_manager.ScoreVsRmsd , job_manager.ScoreVsTime , job_manager.TorsionVsTime , job_manager.WipeCache , pyrosetta.distributed.viewer.modules.setStyle , schema.Job
commands : job_manager.AppWindow
common_type_ : utility::tag::XMLSchemaType
comparator : PickSSE
compare_to_full_WT : mutant_modeler.MutantModeler
comparison_coord_ind_list : gpu_node_block_ptrs
comparison_coord_ind_offset : gpu_node_block_ptrs
comparison_element_1 : node_data
comparison_element_2 : node_data
compiled_parts : detail::compiled_format_base< S, typename >
complex_ : InterfaceDDGBindInnerJob , InterfaceDDGMutationTask
complex_type_ : utility::tag::XMLSchemaElement
complex_type_naming_function_ : utility::tag::XMLSchemaComplexTypeGeneratorImpl
compname_ : myspace::DataClass
components : enumerate_junctions.Design
composite_settings_metric : pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor
compress : pyrosetta.toolbox.py_jobdistributor.PyJobDistributor
compressed : pyrosetta.distributed.cluster.core.PyRosettaCluster
compression : pyrosetta.distributed.cluster.core.PyRosettaCluster , pyrosetta.distributed.cluster.serialization.Serialization
compression_ : utility::io::izstream , utility::io::ozstream
concert_sub_ : MyRotMover , MyTransMover
concerted_ : MyRotMover , MyTransMover
condist_ : CountContact
condition_ : numeric::expression_parser::ITEExpression
conf_count_ : TCDock
Confidence : StructureConfidence
configured_for_score12_ : InteractionGraphPerformanceBenchmark
connect : PyMOL-Rosetta-relay-client.SecretInputDialog
connected_vertices_ : utility::graph::HideVertexVisitor< Graph >
conserved_residues : CapriData
const_seed_ : basic::random::RandomGeneratorSettings
constrain_chi : erraser_option.erraser_option
constrain_phosphate : erraser_option.erraser_option
constraint_forest_ : protocols::abinitio::JumpSpecificAbrelax
constraint_setter_ : DockGlycansProtocol
constraints_ : basic::database::schema_generator::Schema , protocols::abinitio::ComputeTotalDistCst , protocols::abinitio::ShowViolation
contact_counts_ : JDmover
contact_exist : myspace::DataStruct
container_ : detail::iterator_buffer< std::back_insert_iterator< Container >, enable_if_t< is_contiguous< Container >::value, typename Container::value_type > > , numeric::kdtree::KDPointList , ObjexxFCL::SetWrapper< T >
content_type_ : ui::task::NetworkCall
context : binder::ConstructorBindingInfo , BinderVisitor , detail::chrono_formatter< FormatContext, OutputIt, Rep, Period > , detail::format_handler< OutputIt, Char, Context > , formatter< std::chrono::duration< Rep, Period >, Char >::spec_handler
context_ : CL , detail::dynamic_specs_handler< ParseContext > , detail::format_string_checker< Char, ErrorHandler, Args > , detail::specs_handler< ParseContext, Context > , MainWindow , printf_arg_formatter< OutputIt, Char > , protocols::abinitio::CustomAbinitio , ui::network::BowmanThread
continuous_update : pyrosetta.distributed.viewer.core.Viewer
cooldown_time : pyrosetta.distributed.cluster.core.PyRosettaCluster
coord : Anonymous
coordinates_per_entry : numeric::coordinate_fitting::CoordinateArray_RMSD_FlatLookup< Real >
coords : DisulfEpos
coords2 : DisulfEpos
coords_ : Cluster , SequenceCoords
coords_for_col_calc : gpu_node_block_ptrs
coords_for_col_calc_offset : gpu_node_block_ptrs
coords_for_rms_calc : gpu_node_block_ptrs
copy_ss_torsion_only_ : apps::pilot::AlignChunkMover
copyres_ : CycBBMover
core_ : Sasa
cores : pyrosetta.distributed.cluster.core.PyRosettaCluster
corrected_geo : erraser_option.erraser_option
count : numeric::geometry::hashing::Counter , Tensor
count_ : detail::counting_buffer< T > , detail::counting_iterator , detail::fixed_buffer_traits , detail::truncating_iterator_base< OutputIt > , numeric::model_quality::RmsData , utility::keys::KeyCount
counterrot_ : MyRotMover
counts_ : NonceHistogram , numeric::MultiDimensionalHistogram
cover : basic::sampling::orientations::QuatDBMetadata
coverage : basic::sampling::orientations::QuaternionGrid
Cp : Solver
creator_map_ : basic::resource_manager::ResourceLoaderFactory , basic::resource_manager::ResourceLocatorFactory
creators_ : utility::factory::WidgetFactory< Creator >
creators_map_ : basic::resource_manager::ResourceManagerFactory
crs : ConstraintConfig
cs_ : numeric::VoxelArray< _Float, _Value >
cst_bb : ConstraintConfig
cst_file_ : TestQuickRelaxMover
cst_mins_ : ConstraintStatsMover
cst_sc : ConstraintConfig
cst_sub_files_ : PoseWrap
cst_weight_ : TestQuickRelaxMover
CSTSDMULT : ConstraintConfig
cstset_ : ConstraintStatsMover , ConstraintToolMover , protocols::abinitio::JumpSpecificAbrelax
cstyle_A_decomp_ : basic::svd::SVD_Solver
cstyle_b_ : basic::svd::SVD_Solver
cstyle_tmp_ : basic::svd::SVD_Solver
cstyle_v_ : basic::svd::SVD_Solver
cstyle_w_ : basic::svd::SVD_Solver
cstyle_x_ : basic::svd::SVD_Solver
ct_name : utility::tag::XMLSchemaSimpleSubelementList::ElementSummary
ct_naming_func_for_simple_subelements_ : utility::tag::XMLSchemaSimpleSubelementList
ctx_ : detail::arg_formatter< OutputIt, Char > , detail::custom_formatter< Context >
ctype : options_class.Option
cube_dim_ : ClashCheck , MatchSet
cubes_ : ClashCheck , MatchSet
cumulative_distribution_ : numeric::random::WeightedSampler
cumulative_distribution_valid_ : numeric::random::WeightedSampler
cur_offset_ : utility::graph::LowMemEdgeListConstIter , utility::graph::LowMemEdgeListIter
cur_transaction_ : utility::sql_database::session
curr_num_in_recent_history_ : utility::recent_history_queue
curr_pos_ : numeric::expression_parser::TokenSet , utility::FixedSizeLexicographicalIterator< S > , utility::LexicographicalIterator
curr_pose_ : PhProtocol
current_constraints_ : HemeBindingMover
current_id : pyrosetta.toolbox.py_jobdistributor.PyJobDistributor
current_in_progress_name : pyrosetta.toolbox.py_jobdistributor.PyJobDistributor
current_name : pyrosetta.toolbox.py_jobdistributor.PyJobDistributor
current_nstruct_ : protocols::jd2::RECONMPIJobDistributor
current_p_ : utility::json_spirit::Semantic_actions< Value_type, Iter_type >
currently_sending_ : utility::signals::SignalHub< ReturnType, Signal >
custom : detail::value< Context >
custom_ : basic_format_arg< Context >::handle
custom_params_file_ : ui::ui_protocols::helical_bundle::HelicalBundleDialogueWidget
custom_real_value_metric : pyrosetta.bindings.scores.base.PoseCacheAccessorBase , pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor
custom_string_value_metric : pyrosetta.bindings.scores.base.PoseCacheAccessorBase , pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor
custom_trampoline_functions_ : binder::Config
custom_type_name_ : utility::tag::XMLSchemaType
cut_index : SamplingManager
cutoff : numeric::interpolation::spline::LinearFunction
cutpoint : erraser_option.erraser_option
cutpoint_rs : erraser_option.erraser_option
cuts_ : PoseWrap , ThisApplication
Cyan : basic::Tracer , basic::TracerImpl
cyclic_ : PeptoidDihedralGrabber , PeptoidRotamerRecoverer
cys_pos : CCParam