- n -
- N
: basic::sampling::orientations::QuatDBMetadata
, Link
- n
: numeric::xyzTransform< T >::Plane
, options_class.Option
- N
: test.Workshop9_my_shapes.PhiNByXDegreesMover
- n1
: DisulfEpos
- n2
: DisulfEpos
- N_
: basic::svd::SVD_Solver
, FloatScMonteCarlo
, InterfaceHitDatabase
- n_
: PrintFeatures
- N_
: pseudoTraceRecords
- n_
: utility::options::VectorOption_T_< K, T >
- n_atoms_in_rms_calc
: node_data
- n_bins_
: numeric::MathNTensor< T, N >
- n_burried_N_
: CalcsTestMover
- n_burried_O
: CalcsTestMover
- n_burried_polars_
: CalcsTestMover
- n_burried_unsat_
: CalcsTestMover
- n_clashdist_
: CrystFFTDock
- n_comparison_coords
: gpu_node_block_ptrs
- n_coords_for_col_calc
: gpu_node_block_ptrs
- n_cycles_
: DockGlycansProtocol
, GlycomutagenesisProtocol
- n_derivs_
: numeric::interpolation::spline::PolycubicSpline< N >
, numeric::interpolation::spline::PolycubicSpline< 1 >
, numeric::interpolation::spline::PolycubicSpline< 2 >
- n_designs_
: ComputeProfileMover
- n_exposed_polars_
: CalcsTestMover
- n_exposed_sat_
: CalcsTestMover
- n_good_node_pairs
: calculation_data_for_one_block_pair
- n_heavy_atoms_
: CalcsTestMover
- n_iterate
: erraser_option.erraser_option
- n_lower
: options_class.Option
- n_lower_
: utility::options::VectorOption_T_< K, T >
- n_pack_min_runs_
: HDdesignMover
- n_polars_
: CalcsTestMover
- n_res_
: PickSSE
- n_seen_
: numeric::random::ReservoirSampler< T >
- n_term
: enumerate_junctions.Junction
- n_term_attach_length
: enumerate_junctions.Component
- n_term_dhr
: enumerate_junctions.Component
- n_term_res_trim
: enumerate_junctions.Component
- n_term_seq
: enumerate_junctions.Component
- n_total_frags_
: FragMonteCarlo
- n_total_rsds_
: FragMonteCarlo
- n_upper
: options_class.Option
- n_upper_
: utility::options::VectorOption_T_< K, T >
- n_wanted_
: numeric::random::ReservoirSampler< T >
- naccepts
: Bola
- name
: basic::sampling::orientations::QuatDBMetadata
, detail::arg_ref< Char >::value
, detail::named_arg< Char, T >
, detail::named_arg_info< Char >
, enumerate_junctions.DHR
, options_class.Option
, pyrosetta.distributed.docs.ComponentDoc
, ui::network::Bowman::BackEnd
, ui::network::BowmanModel::FunctionIdentifier
, ui::network::FunctionID
, ui::task::FileTableModel::Row
, ui::task::PNode
, ui::task::ProjectTasksModel::Row
, ui::task::Task::Job
, utility::io::TarFileHeader
- name_
: Arch
, basic::database::schema_generator::Column
, basic::sampling::orientations::QuaternionGrid
, Domain
, DomainDescription
, numeric::expression_parser::FunctionToken
, numeric::expression_parser::VariableExpression
, numeric::expression_parser::VariableToken
, PerformanceBenchmark
, pointGroupHit
, sidechain_cst_3.Atom
, Spacegroup
, ui::task::FileID
, ui::task::Functor
, ui::task::Task
, utility::json_spirit::Pair_impl< Config >
, utility::json_spirit::Semantic_actions< Value_type, Iter_type >
, utility::tag::Tag
, utility::tag::XMLSchemaAttribute
, utility::tag::XMLSchemaComplexType
, utility::tag::XMLSchemaElement
, utility::tag::XMLSchemaRestriction
- name_star_
: IAMover
- named_args
: detail::value< Context >
- named_args_
: detail::arg_data< T, Char, NUM_ARGS, NUM_NAMED_ARGS >
- named_info_
: dynamic_format_arg_store< Context >
- names_
: RTminOptMultifunc
- namespace_includes_
: binder::Config
- namespaces_to_bind
: binder::Config
- namespaces_to_skip
: binder::Config
- nangle1_
: Arch
- nangle2_
: Arch
- nargs_
: numeric::expression_parser::FunctionToken
- nat_final_natCoords_end
: Dock
- nat_final_natCoords_start
: Dock
- nat_final_poseCoords_end
: Dock
- nat_final_poseCoords_start
: Dock
- native
: GunnTest
, MatchSet
- native_
: CrystDesign
, DeleteSegments
, Foldptn
, MyScoreMover
, myspace::Evaluator
, TestQuickRelaxMover
- native_abi_
: CalcCdrRms
- native_cst_scores_
: ConstraintStatsMover
- native_distances_
: ConstraintStatsMover
- native_edensity_cutoff
: erraser_option.erraser_option
- native_pose
: pyrosetta.toolbox.py_jobdistributor.PyJobDistributor
- native_pose_
: BuildFullModel
, CalcCdrRms
, CalcIrms
, CaToAllAtom
, DomainAssemblerNDocker
, ExposedStrandMover
, Protocol_MolecularDynamics
, protocols::abinitio::Application
, protocols::abinitio::JumpSpecificAbrelax
, protocols::jumping::LibraryJumpSetup
, protocols::jumping::SpecificJumpSetup
, RescoreCenrot
, RNA_ScoreMover
, SpartaSuperDeviationMover
, SuperDeviationMover
- native_screen_RMSD
: erraser_option.erraser_option
- native_set_
: Protocol_MolecularDynamics
- nativePose_
: protocols::abinitio::ApplicationContext
- natom_
: numeric::geometry::hashing::xyzStripeHashWithMeta< T >
- nballs_
: numeric::geometry::hashing::xyzStripeHash
- NBinsX_
: numeric::VoxelGrid< T >
- NBinsY_
: numeric::VoxelGrid< T >
- NBinsZ_
: numeric::VoxelGrid< T >
- nblocks_
: utility::graph::ArrayPool< T >
- nbr_
: SphereSampler
- nbrs
: CollectNeighbors
- ncell
: basic::sampling::orientations::QuaternionGrid
- nchains
: HelixHit
- nchi
: ChiMover
- nclash
: myspace::DataStruct
- nclashes
: Bola
- ncols_
: numeric::MathTensor< T >
- Ncomp_
: myspace::DataClass
- ncontact_allatm_
: CountContact
- ncontact_atm_hpres_
: CountContact
- ncontact_hpatm_
: CountContact
- ncontact_res_eh_
: CountContact
- ncontact_res_hh_
: CountContact
- ncopies_
: Spacegroup
- ncst
: ConstraintConfig
- NCYC_
: CrystDesign
, Packing_energies
, SSM_energies
- ncycles_
: PepMinMover
- NDimensional_
: numeric::VoxelGrid< T >
- need_to_rebuild_pose_
: MainWindow
- need_to_update_pose_
: MainWindow
- neg_begin_
: utility::graph::ArrayPool< T >
- neg_ptr_
: utility::graph::ArrayPoolElement< T >
- neg_space_blocks_
: utility::graph::ArrayPool< T >
- negative
: detail::chrono_formatter< FormatContext, OutputIt, Rep, Period >
- nego
: Hit
- neighbor_count_
: PhProtocol
- neighbor_cutoff_
: ClashCheck
- neighbor_cutoff_sq_
: ClashCheck
, MatchSet
- neighbor_dis_
: protocols::antibody::design::AntibodyDesignMoverGenerator
- neighbor_distance_cutoff_
: BacksideHbondFinderMover
- neighbors_
: SphereNode
- nent
: basic::sampling::orientations::QuaternionGrid
- network_call_
: ui::task::TaskCancelDialog
- new_aa_
: InterfaceDDGBindInnerJob
, InterfaceDDGMutationTask
- new_torsional_potential
: erraser_option.erraser_option
- newaa
: CnlRes
- NEXP_
: Packing_energies
- next
: Cache::head_t
, detail::dynamic_arg_list::node< typename >
- next_
: utility::graph::DirectedEdgeListElement
, utility::graph::EdgeListElement
, utility::graph::NegSpaceElement< T >
, utility::list_element< T >
- next_arg_id_
: basic_format_parse_context< Char, ErrorHandler >
- next_buffer
: SVR_Q
- nfev
: numeric::nls::lm_status_struct
- nfft_
: numeric::fourier::kiss_fft_state
- nfold1_
: Arch
- nfold2_
: Arch
- nfrags_
: SwapElementsMover1
, SwapElementsMover2
- nhelices_
: DomainDescription
- nhub
: ConstraintConfig
- nintercst
: ConstraintConfig
- nintracst
: ConstraintConfig
- NItems_
: numeric::VoxelGrid< T >
- nJumps_
: protocols::jumping::LibraryJumpSetup
, protocols::jumping::SpecificJumpSetup
- nlayers_
: numeric::MathTensor< T >
- nlcontacts_
: Features
- nloops_
: DomainDescription
- nmer_
: DockFragmentsMover
- nmer_small_
: DockFragmentsMover
- nmessages_
: utility::SimulateMPIData
- NMmover_
: myspace::Scheduler
- nmodels_
: CrystFFTDock
- nmoves_
: TestQuickRelaxMover
- nnegative_
: utility::graph::ArrayPool< T >
- no_constraints_scorefxn_for_ddG_calc_
: zinc1_homodimer_design
- no_rbmin
: MinPackMin
- no_rbmin_
: MinPackMinMover
- node1_
: numeric::ClusterOptions
- node2_
: numeric::ClusterOptions
- node_id
: node_data
- node_id_
: ui::task::Node
- node_index
: node_data
- node_index_
: utility::graph::DirectedNode
, utility::graph::LowMemNode
, utility::graph::Node
- node_indices_
: utility::graph::DirectedEdge
, utility::graph::Edge
- node_stack_
: utility::tag::XMLErrorHandler
- nodes_
: utility::graph::Digraph
, utility::graph::DirectedEdge
, utility::graph::DisjointSets
, utility::graph::Edge
, utility::graph::Graph
, utility::graph::LowMemGraph< _LMNode, _LMEdge >
- NOFILT_
: CrystDesign
- noise_range_
: SimulateCryoMover
- nonparametric_COM_vect_
: ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget
- nonparametric_pose_
: MainWindow
- nonparametric_pose_offset_
: MainWindow
- nonparametric_pose_rotation_
: MainWindow
- nonparametric_rotation_xform_
: ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget
- nonparametric_translation_vect_
: ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget
- not_python_builtins
: binder::Config
- not_token_
: numeric::expression_parser::ArithmeticASTFactor
- notes_
: basic::citation_manager::UnpublishedModuleAuthor
- npos
: ObjexxFCL::Cstring
, ObjexxFCL::FArray1< T >
, ObjexxFCL::FArray1A< T >
, ObjexxFCL::FArray1P< T >
, ObjexxFCL::FArray2< T >
, ObjexxFCL::FArray2A< T >
, ObjexxFCL::FArray2P< T >
, ObjexxFCL::FArray3< T >
, ObjexxFCL::FArray3A< T >
, ObjexxFCL::FArray3P< T >
, ObjexxFCL::FArray4< T >
, ObjexxFCL::FArray4A< T >
, ObjexxFCL::FArray4P< T >
, ObjexxFCL::FArray5< T >
, ObjexxFCL::FArray5A< T >
, ObjexxFCL::FArray5P< T >
, ObjexxFCL::FArray6< T >
, ObjexxFCL::FArray6A< T >
, ObjexxFCL::FArray6P< T >
, ObjexxFCL::FArray< T >
, ObjexxFCL::IndexRange
- nproc
: erraser_option.erraser_option
- nr_class
: svm_model
- nr_weight
: svm_parameter
- nres
: BB
, CCParam
, ConstraintConfig
, PoseWrap
- nres_
: BBMover
, CycBBMover
, protocols::jumping::LibraryJumpSetup
, protocols::jumping::SpecificJumpSetup
, ScMinMover
, utility::SimpleRange1
- nres_from_pw_
: FloatScRotMover
- nrots1_
: HBondedPairIterator
- nrots2_
: HBondedPairIterator
- nrows_
: numeric::MathTensor< T >
- nRsteps
: numeric::fourier::SHT
- nstrands_
: DomainDescription
- nstruct
: pyrosetta.distributed.cluster.core.PyRosettaCluster
, pyrosetta.toolbox.py_jobdistributor.PyJobDistributor
, ui::task::Task::Job
- nstruct_
: MinToolMover
, PickBAB
- nStruct_
: protocols::abinitio::ApplicationContext
- nstruct_
: RDCToolMover
- nsub
: CCParam
, ConstraintConfig
, PoseWrap
- nSV
: svm_model
- nthreads_
: AppSettings
- ntot
: basic::sampling::orientations::QuaternionGrid
- ntrials
: Bola
- nu
: svm_parameter
- null
: utility::json_spirit::Value_impl< Config >
- null_frag_
: FragmentAssemblyMover
- null_frag_score_
: FragMonteCarlo
- num_accepted
: schema.Move
- num_args
: format_arg_store< Context, Args >
- num_args_
: detail::compile_parse_context< Char, ErrorHandler >
- num_bab_
: PickBAB
- num_bins_
: numeric::MultiDimensionalHistogram
- num_considered_
: numeric::random::WeightedReservoirSampler< T >
- num_edges_
: utility::graph::Digraph
, utility::graph::Graph
, utility::graph::UpperEdgeGraph< V, E >
- num_edges_to_larger_indexed_nodes_
: utility::graph::Node
- num_edges_to_smaller_indexed_nodes_
: utility::graph::Node
- num_elements_
: utility::recent_history_queue
- num_entries
: numeric::coordinate_fitting::CoordinateArray_RMSD_FlatLookup< Real >
- num_format_parts
: detail::compiled_format_base< S, enable_if_t< is_compile_string< S >::value > >
- num_hyneighbors_
: Features
- num_incident_edges_
: utility::graph::DirectedNode
, utility::graph::Node
- num_iterations_
: HemeBindingMover
- num_lower_edges_
: utility::graph::UEVertex< V, E >
- num_named_args
: format_arg_store< Context, Args >
- num_neighbors_
: Features
- num_neighbors_counting_self_static_
: utility::graph::Node
- num_nodes_
: utility::graph::Digraph
, utility::graph::Graph
- num_parts
: detail::part_counter< Char >
- num_pose_kept
: erraser_option.erraser_option
- num_pose_kept_cluster
: erraser_option.erraser_option
- num_rotations_to_project_from_
: SimulateCryoMover
- num_satisfied_
: ExposedStrandMover
- num_trials
: schema.Move
- num_upper_edges_
: utility::graph::UEVertex< V, E >
- num_vertices_
: utility::graph::UpperEdgeGraph< V, E >
- number_
: utility::json_spirit::Json_grammer< Value_type, Iter_type >::definition< ScannerT >
- number_jobs_
: protocols::jd2::RECONMPIJobDistributor
- number_valid_vertices_
: utility::graph::HideVertexVisitor< Graph >
- NumberCols_
: numeric::MathMatrix< T >
- NumberHBonds_
: CalcsTestMover
- numbering_scheme_
: protocols::antibody::task_operations::AddFrameworkProfilesOperation
- NumberRows_
: numeric::MathMatrix< T >
- numpy_caches
: schema.Job