- p -

• P : Link
• p : Solver , svm_parameter
• P0 : numeric::xyzTransform< T >::Line
• p1 : numeric::fourier::SHT
• P1 : numeric::xyzTransform< T >::Line
• p_ : numeric::ColsPointer< T > , numeric::geometry::hashing::xyzStripeHash::iter_base< C > , numeric::geometry::hashing::xyzStripeHashWithMeta< T >::iter_base< C > , numeric::RowsPointer< T >
• pack_first : MinPackMin
• pack_first_ : MinPackMinMover
• pack_mover : DesignBenchmark , JDtestmover
• pack_rotamers_ : CenRotDockingMover , SmoothFragRepackMover
• pack_rotamers_mover_ : HemeBindingMover
• packer_ : DockGlycansProtocol , GlycomutagenesisProtocol , protocols::jd2::RECONMPIJobDistributor
• packer_neighbor_graph_ : InteractionGraphPerformanceBenchmark
• packmover_ : MoveThenFixHMin
• packstat_ : Features
• padding : detail::write_int_data< Char > , utility::io::TarFileHeader
• pages : job_manager.DatabaseWindow
• pair_ : utility::json_spirit::Json_grammer< Value_type, Iter_type >::definition< ScannerT >
• pair_scorefxn_ : zinc1_homodimer_design
• param : svm_model
• parent : numeric::DietNode< T >::split_tuple , ui::task::PNode , ui::util::TreeNodeModel< T >::Node , utility::graph::DS_Node
• parent_ : basic::datacache::HierarchicalDataMap , numeric::ClusteringTreeNode , numeric::kdtree::KDNode , ui::task::Node , utility::tag::XMLSchemaRepeatableCTNode
• parents_ : PathFinder , SphereNode
• parentTag_ : utility::tag::Tag
• parse_context : detail::format_handler< OutputIt, Char, Context >
• parse_context_ : detail::format_string_compiler< Char, PartHandler > , detail::specs_handler< ParseContext, Context >
• parse_ctx_ : basic_printf_context< OutputIt, Char > , detail::arg_formatter< OutputIt, Char > , detail::custom_formatter< Context >
• parse_funcs_ : detail::format_string_checker< Char, ErrorHandler, Args >
• parser_ : numeric::CalculatorParser
• part_ : detail::format_string_compiler< Char, PartHandler >
• part_kind : detail::format_part< Char >
• particles_ : utility::tag::XMLSchemaModelGroup
• partner1_res_ : TwoChainInterface , TwoChainTenANeighbors
• partner2_res_ : TwoChainInterface , TwoChainTenANeighbors
• partner_ : MPInterfaceStatistics
• partner_info_ : abbinding , PhDocking
• partners_ : MPInterfaceStatistics
• passed_filts : CrystRelax
• passkey : pyrosetta.distributed.cluster.logging_listeners.SocketListener
• password : ui::config::UserCredentials
• patch : pyrosetta.distributed.tasks.score.ScorePoseTask
• path : arls_impl.DockingFile , ui::task::FileTableModel::Row
• path_ : PathFinder , utility::file::FileName , utility::file::PathName
• path_vectors_ : utility::options::OptionCollection
• pathmap_ : utility::graph::RingEdgeAnnotationVisitor< Graph, EdgeMap, PathMap >
• paths_ : utility::graph::RingDetection< Graph > , utility::options::OptionCollection
• pausing_ : utility::signals::PausableSignalHub< ReturnType, Signal >
• payload_ : utility::VBWrapper< T >
• pca_ : protocols::abinitio::JumpSpecificAbrelax , protocols::abinitio::PcaEvaluator
• pdb : DisulfEpos , enumerate_junctions.Component , enumerate_junctions.DHR , enumerate_junctions.Junction , HelixHit
• pdb_chain_ : HDmakerMover
• pdb_chain_no_ : PhProtocol
• pdb_file_name_ : abbinding , PhDocking , PhProtocol
• pdb_info : pyrosetta.bindings.pose.ResidueLabelAccessor
• pdb_name : pyrosetta.toolbox.py_jobdistributor.PyJobDistributor
• pdb_path : SamplingManager
• pdb_posA_ : PairScore
• pdb_posB_ : PairScore
• pdb_res_nos_ : PhProtocol
• pdb_seq_pos_ : Features
• pdb_string_ : PDB_IOBenchmark
• pdbchain : HelixHit
• pdbname : myspace::InputData
• pdbname_ : zinc1_homodimer_design , ZincMinimize
• pdbname_base_ : zinc1_homodimer_design , zinc2_homodimer_design
• pdbres : HelixHit
• pdbres1 : DisulfEpos
• pdbres2 : DisulfEpos
• pdbstrings : pyrosetta.distributed.viewer.core.Viewer
• pddf_score_ : PrintPDDF
• pep_pos : pep_coord_cst
• per_residue_clash_metric : pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor
• periodic_ : numeric::interpolation::Histogram< X, Y > , numeric::interpolation::InterpolatedPotential< N >
• perlin_noise_multiplier_ : SimulateCryoMover
• perlin_noise_offset_ : SimulateCryoMover
• pert_scales_ : myspace::Scheduler
• perturb_bundle_ : MainWindow
• perturber_ : ClosureMover , DockGlycansProtocol
• perturbers_ : Perturbers1 , Perturbers2
• pH_mode_ : PhDocking
• pH_neighbor_pack_ : PhProtocol
• pH_prepack_ : PhProtocol
• pH_relax_ : PhProtocol
• phi : myspace::DataStruct , myspace::InputData
• phi_ : MakeCanonicalHelix , numeric::sphericalVector< T >
• phibin_ : ScoreFragInfo
• phid1 : Hit
• phid2 : Hit
• picker_ : FragmentBasedDesign
• picker_rank : FragID
• picking_rounds_ : protocols::antibody::task_operations::AddFrameworkProfilesOperation
• pickled_pose : pyrosetta.distributed.packed_pose.core.PackedPose
• pimpl_ : utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLValidator
• ping_interval : ui::network::B
• pivot_picker_ : ClosureMover
• pivots_ : BBG_Cyclic_Mover
• pixel_size_ : SimulateCryoMover
• pka_all_ : PhProtocol
• pka_rad_ : PhProtocol
• pka_value_ : PhProtocol
• platform_ : CL
• pleating_ : protocols::jumping::LibraryJumpSetup , protocols::jumping::SpecificJumpSetup
• pnt : IsctFast
• pointer : detail::value< Context >
• points_ : ClashCheck , MatchSet , numeric::interpolation::spline::SplineGenerator
• polar_only : pyrosetta.distributed.viewer.modules.setHydrogens
• poll_frequency_ : ServerInfo
• poll_items : ui::network::B
• polynomial_name_ : numeric::Polynomial_1d
• pool_ : AssignClusterToolMover
• pore_radius_ : Sasa
• porphyrin_position_ : HemeReplace
• pos : FragID
• pos2frags : FragmentAssemblyMover
• pos_ : FragID , FunGroupTK , RotSel
• pos_in_nodes_edge_list_ : utility::graph::DirectedEdge , utility::graph::Edge
• pos_in_owners_edge_list_ : utility::graph::DirectedEdge , utility::graph::Edge
• pos_to_fragcands_ : FragMonteCarlo
• posA_ : PairScore
• posB_ : PairScore
• pose : apps::pilot::KicSandbox , HIT , MatchBase , MatchLig , PDB_IOBenchmark , PoseAndData , PoseWrap , pyrosetta.bindings.pose.PoseResidueAccessor , pyrosetta.bindings.pose.PoseResidueLabelAccessor , pyrosetta.bindings.pose.PoseScoreAccessor , pyrosetta.bindings.scores.base.PoseCacheAccessorBase , pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor , SamplingManager , ScoreBenchmark , ShearMoverBenchmark , SmallMoverBenchmark , test.T010_LoadPDB.LoadPDBTest , test.T300_PyJobDistributor.TestPyJobDistributor , WorkDat
• pose0_ : HBondedPairIterator
• pose_ : ClashCheck , CoupledFunc , Domain , FastRelaxPerformanceBenchmark , FragInfo , FunGroupTK , HBondedPairIterator , InteractionGraphPerformanceBenchmark , MainWindow , NBuriedUnsatsCalcultor , PosePyObserver , RotSel , ScoreEachBenchmark , sidechain_cst_3.Residue , SlideTask , ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• pose_draw_widget_ : MainWindow
• pose_filename_ : ZincMinimize
• pose_s2_ : Results_Keeper
• pose_s_ : Results_Keeper
• pose_tags_ : SpartaSuperDeviationMover , SuperDeviationMover
• posename_ : CalcsTestMover
• poses : pyrosetta.distributed.viewer.core.Viewer
• poses_ : MPDomainAssembly , PoseWrap , RTminOptMultifunc
• posn_begin_ : utility::json_spirit::Stream_reader_thrower< Istream_type, Value_type >
• posn_end_ : utility::json_spirit::Stream_reader_thrower< Istream_type, Value_type >
• post_ : MyRotMover , MyTransMover
• post_data_ : ui::task::NetworkCall
• postfix : formatting_range< Char, Enable > , formatting_tuple< Char, Enable >
• postfrac_ : MyRotMover , MyTransMover
• powers_of_10_64 : detail::basic_data< T >
• powers_of_5_64 : detail::basic_data< T >
• pq_schema_ : utility::sql_database::session
• pre_process_ : abbinding
• pre_trans_ : Results_Keeper
• precision : basic_format_specs< Char > , detail::chrono_formatter< FormatContext, OutputIt, Rep, Period > , detail::fixed_handler , detail::float_specs , formatter< std::chrono::duration< Rep, Period >, Char >
• precision_ref : detail::dynamic_format_specs< Char > , formatter< std::chrono::duration< Rep, Period >, Char >
• precompute_pml_ : numeric::fourier::SHT
• precompute_pml_trans_ : numeric::fourier::SHT
• precompute_wig_trans_ : numeric::fourier::SHT
• predicted_distance_ : DistancePrediction
• prefix : binder::Config , detail::int_writer< OutputIt, Char, UInt > , formatting_range< Char, Enable > , formatting_tuple< Char, Enable > , pyrosetta.distributed.utility.log.ProgressLogger , utility::io::TarFileHeader
• prefix_code_ : binder::ClassBinder
• prefix_for_static_member_functions_ : binder::Config
• prefix_includes_ : binder::ClassBinder
• prefix_size : detail::int_writer< OutputIt, Char, UInt >
• pretty_ : numeric::expression_parser::ASTPrinter , utility::json_spirit::Generator< Value_type, Ostream_type >
• prev : Cache::head_t
• prev_ : utility::list_element< T >
• previewed_file_ : ui::task::TaskView
• previous_ : utility::graph::DirectedEdgeListElement , utility::graph::EdgeListElement
• pri : WorkDat
• primary_authors_ : basic::citation_manager::Citation
• primary_key_ : basic::database::schema_generator::Schema
• primary_shell_neighbors_ : HbondZinc , HbondZincBackbone
• primary_subsub : PoseWrap
• print_channel_name : basic::TracerOptions
• print_unsat_only_ : CalcsTestMover
• printflags : numeric::nls::lm_control_struct
• priority_ : basic::Tracer , basic::Tracer::TracerProxy , basic::TracerImpl , basic::TracerImpl::TracerProxyImpl
• private_int_not_binded : Consts
• private_static_not_binded : Consts
• prob : myspace::DataStruct
• prob_br_ : HemeBindingMover
• probA : svm_model
• probability : svm_parameter
• probB : svm_model
• probe_radius_ : CalcsTestMover
• process : job_manager.CommandRunner
• processed_ : utility::SimulateMPIMessage
• processes : pyrosetta.distributed.cluster.core.PyRosettaCluster
• program_ : CL
• progress : job_manager.CommandRunner
• project_ : ui::task::ProjectModel , ui::task::ProjectView , ui::task::Task
• project_name : pyrosetta.distributed.cluster.core.PyRosettaCluster
• propogate : enumerate_junctions.Component
• protein : arls_impl.DockingCase
• protein_pack_reps : mutant_modeler.MutantModeler
• protocol : apps::pilot::KicSandbox
• protocol_id_ : basic::mpi::DbMoverMessageListener
• protocol_lock : pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask , pyrosetta.distributed.tasks.score.ScorePoseTask
• protocol_name : pyrosetta.distributed.cluster.logging_filters.SetProtocolNameFilter
• protocol_xml : pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask
• protocols_key : pyrosetta.distributed.cluster.core.PyRosettaCluster
• pseudocountsFraction : DisulfideBondEnergy
• psformat64 : numeric::random::mt19937_RG
• psi : myspace::DataStruct , myspace::InputData
• psi_ : MakeCanonicalHelix
• psibin_ : ScoreFragInfo
• pt_ : numeric::kdtree::KDNode
• ptask_ : Packing_energies , SSM_energies
• ptr_ : detail::arg_formatter< OutputIt, Char > , detail::buffer< T >
• public_int : Consts
• public_Integral : Consts
• public_static : Consts
• pw_ : MyRotMover , MyTransMover
• px_ : numeric::HomogeneousTransform< T >
• py_ : numeric::HomogeneousTransform< T >
• pybind11_include_file_ : binder::Config
• pymol_print_ : GlycanClashCheckMover
• pymol_selection_ : XMLprinterMover
• pyrosetta_build : pyrosetta.distributed.cluster.core.PyRosettaCluster
• pyrosetta_init_args : pyrosetta.distributed.cluster.core.PyRosettaCluster
• python_builtins : binder::Config
• pz_ : numeric::HomogeneousTransform< T >