- r -

• R : numeric::xyzTransform< T >
• r : rgb , Solver::SolutionInfo
• R : SpacegroupHit , XFORM
• r1atind : hbgeom_to_measure
• r1d : MatchAlignInfo
• r2atind : hbgeom_to_measure
• r2d : MatchAlignInfo
• R_ : numeric::BodyPosition< T > , SingleInterface
• R_fresh_ : numeric::BodyPosition< T >
• radius : basic::sampling::orientations::QuatDBMetadata , LMAX , pyrosetta.distributed.viewer.modules.setDisulfides , pyrosetta.distributed.viewer.modules.setHydrogenBonds , pyrosetta.distributed.viewer.modules.setHydrogens , pyrosetta.distributed.viewer.modules.setStyle , test.Workshop9_my_shapes.MyCircle
• radius_ : Cluster , numeric::geometry::hashing::Ball , numeric::sphericalVector< T > , SetOfClusters
• rama : Bola
• rama_ : UniformPerturber
• random_device_name_ : basic::random::RandomGeneratorSettings
• randomizerA_ : DockGlycansProtocol
• range_ : RepFunc
• range_length_limit : formatting_range< Char, Enable >
• rank : utility::graph::DS_Node
• rank_ : utility::SimulateMPI
• rasmol_ : Sasa
• raw_headers_ : ui::task::NetworkCall
• raw_utf8_ : utility::json_spirit::Generator< Value_type, Ostream_type >
• rb_mover_ : CenRotDockingMover
• rbjump : MinPackMin
• rbjumps : MyRotMover , MyTransMover
• rbparentres : MyRotMover
• rcen : Hit
• rdc_file_ : MyScoreMover
• rdc_raw_data_ : MyScoreMover
• rdcrs_ : RDCScoreMover
• read_counts_ : utility::io::FileContentsMap
• read_limit_ : utility::io::FileContentsMap
• read_n_good_node_pairs_event : calculation_data_for_one_block_pair
• real_indices_ : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• real_vectors_ : utility::options::OptionCollection
• reals_ : utility::options::OptionCollection
• reason_ : utility::json_spirit::Error_position
• rebuild_all : erraser_option.erraser_option
• rebuild_max_iterations_ : SwapElementsMover1
• rebuild_res : erraser_option.erraser_option
• rebuild_res_list : erraser_option.erraser_option
• rebuild_res_pdb : erraser_option.erraser_option
• rebuild_rmsd : erraser_option.erraser_option
• recent_history_queue_ : utility::recent_history_queue
• record_annealer_trajectory_ : core::pack::annealer::FixbbSimAnnealer
• recursive_ : ui::task::Node
• Red : basic::Tracer , basic::TracerImpl
• redesign_final_poseCoords_end : Dock
• redesign_final_poseCoords_start : Dock
• ref_pose_ : DockGlycansProtocol , FitMover
• reference_columns_ : basic::database::schema_generator::ForeignKey
• reference_job_ : InterfaceDDGBindInnerJob
• reference_pose_ : ConstraintToolMover
• reference_table_ : basic::database::schema_generator::ForeignKey
• refine_ : abbinding
• refine_stage_ : PhProtocol
• refuse_unexpected_files_ : utility::io::FileContentsMap
• regex_expression_ : DomainDescription
• regex_pattern_ : DomainDescription
• registry_shift_ : apps::pilot::AlignChunkMover
• relax_ : CrystRelax
• relevant_ : utility::options::OptionCollection
• relevant_chains_ : HBondReporter
• remove_trailing_zeros_ : utility::json_spirit::Generator< Value_type, Ostream_type >
• rep_ : GridWeights
• rep_edge_res_ : PoseWrap
• rep_mult_ : DockGlycansProtocol
• repack_again_ : TestQuickRelaxMover
• repack_score_function_ : HemeBindingMover
• repack_score_scale_ : CenRotRBRelaxMover , CenRotRelaxMover
• repeat_final_poseCoords_end : Dock
• repeat_final_poseCoords_start : Dock
• repeat_length : enumerate_junctions.Component , enumerate_junctions.DHR
• repeat_seq : enumerate_junctions.DHR
• repeatable_max_occurs_ : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• repeatable_min_occurs_ : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• repl : detail::format_part< Char >::value
• reply_ : ui::task::NetworkCall , ui::task::Node , ui::task::Updater
• report_ : basic::Reporter
• reporter_ : InterfaceFeaturesTests
• request_ : ui::task::FunctorNetworkCall
• res : pyrosetta.bindings.pose.ResidueLabelAccessor
• res1_conformation : local_minimum
• res_ : utility::Enumerate1
• res_data_ : GlycanClashCheckMover
• res_ind_desc_ : InterfaceDDGBindInnerJob
• res_slice : erraser_option.erraser_option
• res_to_loose_ : ExposedStrandMover
• res_types_ : PoseWrap
• resA_name_ : PairScore
• resB_name_ : PairScore
• reservoir_ : numeric::random::WeightedReservoirSampler< T >
• Reset : basic::Tracer , basic::TracerImpl
• reset_color : detail::basic_data< T >
• reset_torsion_unaligned_ : apps::pilot::AlignChunkMover
• resfile_ : PhDocking , SetupHotspotMover
• resi_ : sidechain_cst_3.Residue
• resid_ : numeric::geometry::hashing::Ball
• resid_2_chain_and_resid_ : HPatchByChainNPDCalculator
• residue_ : ChiMover
• residue_chain_vectors_ : utility::options::OptionCollection
• residue_scores_ : RosettaHolesMover
• residue_selector : pyrosetta.distributed.viewer.modules.setStyle , pyrosetta.distributed.viewer.modules.setSurface , pyrosetta.distributed.viewer.modules.setZoomTo
• residue_selector_ : MainWindow , ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• residue_type : local::HbondInfo
• residues_ : CartPerturber
• resind : input_mutation
• resmap_ : myspace::Evaluator
• resn_ : sidechain_cst_3.Residue
• resno : myspace::InputData
• resnum : local::HbondInfo
• Resolution_ : numeric::VoxelGrid< T >
• resolution_ : SimulateCryoMover
• ResolutionX_ : numeric::VoxelGrid< T >
• ResolutionY_ : numeric::VoxelGrid< T >
• ResolutionZ_ : numeric::VoxelGrid< T >
• resource_declarations_ : basic::resource_manager::ResourceManager
• resource_locator_declarations_ : basic::resource_manager::ResourceManager
• resource_locator_tags_ : basic::resource_manager::ResourceManager
• resource_locators_ : basic::resource_manager::ResourceManager
• resource_map_ : basic::datacache::DataMap
• resource_tags_ : basic::resource_manager::ResourceManager
• resources_ : basic::resource_manager::ResourceManager
• resources_a_resource_depends_on_ : basic::resource_manager::ResourceManager
• resources_being_constructed_stack_ : basic::resource_manager::ResourceManager
• resources_to_hold_until_deallocation_explicitly_requested_ : basic::resource_manager::ResourceManager
• rest_and_clause_token_ : numeric::expression_parser::ArithmeticASTRestAndClause
• rest_expression_token_ : numeric::expression_parser::ArithmeticASTRestExpression
• rest_or_clause_token_ : numeric::expression_parser::ArithmeticASTRestOrClause
• rest_term_token_ : numeric::expression_parser::ArithmeticASTRestTerm
• restrict_access : options_class.Option
• restrict_design_operation_ : protocols::antibody::design::AntibodyDesignMoverGenerator
• restricted_access_ : utility::options::Option
• restricted_repack_mover_ : HemeReplace
• restrictions_ : utility::tag::XMLSchemaRestriction
• restype_ : RerootEdgeSorter , RerootRestypeVisitor
• result : basic::ExecutionResult
• result_ : PerformanceBenchmark , ui::task::NetworkCall
• result_data_ : nacl_rosetta::RosettaURLFileHandler
• reverse : LMAX
• revertonly_ : CrystDesign
• revision : schema.Job
• RG_ : apps::pilot::AlignChunkMover , apps::pilot::CustomFragmentMover , apps::pilot::HelixMover , apps::pilot::MultiTemplateAlignChunkMover , apps::pilot::SampleSecondaryStructureAlignmentMover
• rgb_color : detail::color_type::color_union
• rh : CCParam
• rho : decision_function , Solver::SolutionInfo , svm_model
• rhx : CCParam
• rhy : CCParam
• ridx : CnlRes
• right_ : numeric::ClusteringTreeNode , numeric::DietNode< T >
• right_child_ : numeric::kdtree::KDNode
• right_padding_shifts : detail::basic_data< T >
• rigid_sfxn_ : TCDock
• ring_mm_ : DockGlycansProtocol
• ring_mover_ : DockGlycansProtocol
• rings_ : utility::graph::RingDetection< Graph >
• rinst_ : nacl_rosetta::RosettaURLFileHandler
• rise : fiberHit
• rlxcst : HubDenovo
• rlxnocst : HubDenovo
• rms : PoseAndData
• rms_ : CAtrace
• rms_coords_moment_of_inertia : gpu_node_block_ptrs
• rms_data : calculation_data_for_one_block_pair
• rms_data_table : calculation_data_for_one_block_pair
• rmsd : Dock , Hit
• rmsd_table_ : FragMonteCarlo
• rmses : FragmentAssemblyMover
• rna_atoms_ : CapriTotalEnergy
• rna_chemical_mapping_energy_ : RNA_ScoreMover
• rna_data_reader_ : RNA_ScoreMover
• rna_de_novo_protocol_ : BuildFullModel
• rna_prot_erraser : erraser_option.erraser_option
• rng_type_ : basic::random::RandomGeneratorSettings
• roc_curve_ : numeric::RocCurve
• roc_point_vector_ : numeric::RocCurve
• root1_ : numeric::Polynomial_1d
• root2_ : numeric::Polynomial_1d
• root_ : numeric::DiscreteIntervalEncodingTree< T > , numeric::kdtree::KDTree , RerootRestypeVisitor , ui::task::ProjectModel , ui::task::TaskSyncer_NodeStrategy , ui::util::TreeNodeModel< T >
• root_atomno_ : PoseWrap
• root_module : binder::Config
• roses : Bola
• rosetta_bin : erraser_option.erraser_option
• rosetta_database : erraser_option.erraser_option
• rosetta_folder : erraser_option.erraser_option
• rosetta_prefix : mutant_modeler.MutantModeler
• rosetta_script_ : XMLParseBenchmark
• rot : CCParam , Tags
• rot_ : DockGlycansProtocol
• rot_index : InterfaceHit
• rot_mag_ : SymRBMover
• rot_magnitude_ : CenRotDockingMover
• rot_samples_ : HBondedPairIterator
• rot_step_ : CrystFFTDock
• rotamer_prot_stats_ : PhProtocol
• rotation : fiberHit
• rotation_ : MainWindow , numeric::linear_algebra::EllipseParameters , Results_Keeper
• rotid_ : ScoreFragInfo
• rotidx_ : ScoreFragInfo
• rotjumps : MyRotMover
• rotlist_ : numeric::AxisRotationSampler , numeric::UniformRotationSampler
• rotn : Hit
• rotnum_ : CrystFFTDock
• rotset1_ : HBondedPairIterator
• rotset2_ : HBondedPairIterator
• rotsets_ : InteractionGraphPerformanceBenchmark
• rotx_ : ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• roty_ : ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• rotz_ : ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget
• rounds_ : CartPerturber , myspace::GraftTester
• router : pyrosetta.distributed.cluster.worker_plugins.SocketLoggerPlugin
• row1 : PyMOL-Rosetta-relay-client.Matrix , PyMOL-RosettaServer.Matrix , pyrosetta.PyMOLRosettaServer.Matrix
• row2 : PyMOL-Rosetta-relay-client.Matrix , PyMOL-RosettaServer.Matrix , pyrosetta.PyMOLRosettaServer.Matrix
• row3 : PyMOL-Rosetta-relay-client.Matrix , PyMOL-RosettaServer.Matrix , pyrosetta.PyMOLRosettaServer.Matrix
• row_list_ : basic::database::insert_statement_generator::InsertGenerator
• rows_ : ui::task::FileTableModel , ui::task::ProjectTasksModel
• rpc_ : RosettaJob
• rscore : Hit
• rsd : Hit
• rsd1 : DCST , DsfHit , Hit , MatchLig
• rsd2 : DCST , DsfHit , Hit , MatchLig
• rsd_ : FloatScMonteCarlo , FloatScRandomChi , FunGroupTK , ScMinMover
• rsd_set_ : dsRNA_grow , RNA_ScoreMover
• run_local : mutant_modeler.MutantModeler
• rurlhandler_ : nacl_rosetta::RosettaInstance