Here is a list of all file members with links to the files they belong to:

- f -

• f : gen_env_dep_orient_decompose.m , draw_gen_env_dep_orient_decompose.m
• fa_cenpack_pdbstats_from_pose() : pdbstats_test.cc
• fa_refine_and_design() : dubois.cc , spiro.cc , smhybrid.cc
• fa_scorefxn_test() : test1.cc
• factorial() : bettercluster.cc
• facts_test() : test_multithreaded_ramapp_load.cc
• FADE : get_info.cc
• FAILURE() : test_CarbohydrateInfo.cc , test_coenzymes.cc , test_carbohydrate_scoring.cc , test_carbohydrate_docking.cc , phosphorylation.cc , N-terminal_acetylation.cc , glycosyltransfer.cc , dock_glycans.cc , mucintypeglycosylation.cc , design_glycans.cc , test_glycan_linkages.cc , glycomutagenesis.cc , design_glycans.cc , DNA_methylation.cc
• fast_clash_check() : byres_data.cc , hbscan.cc , generate_hbond_geometry.cc
• fast_relax_perf_benchmark : FastRelax.bench.hh
• fast_relax_perfbench_mmstd : FastRelax.bench.hh
• fast_relax_perfbench_sc12he : FastRelax.bench.hh
• fast_relax_perfbench_sc12sp2 : FastRelax.bench.hh
• fast_relax_perfbench_score12 : FastRelax.bench.hh
• fast_relax_perfbench_sp2hecart : FastRelax.bench.hh
• fastexp() : flail.cc
• fastpow2() : flail.cc
• fav_nat_bonus : zinc1_homodimer_design.cc , zinc2_homodimer_design.cc
• fclose() : draw_gen_env_dep_pair_decompose.m , gen_env_dep_pair_decompose.m
• fd_instantiated_by_use_in_function_not_binded() : T20.template.hpp
• fdrule() : aggregate_coarse_rna_vdw.cc
• feed_rms_and_clash_scores_to_database() : BundlePairRmsdCalculatorGPU.cc , SmotifPairRmsdCalculatorGPU.CC
• fere_torsions() : gpu_linker.cc
• fetch_atom_names() : extract_motifs.cc
• ff_instantiated_by_use_in_function_not_binded() : T20.template.hpp
• fg() : color.h
• FGAPI : freeglut_std.h
• FGAPIENTRY : freeglut_std.h
• fi() : T20.template.hpp , T61.smart_holder.hpp
• fi_instantiated_by_use_in_function() : T20.template.hpp , T61.smart_holder.hpp
• figure_out_best_alpha_beta_gamma() : stepwise_helix_test.cc
• figure_out_domain_map() : rna_test.cc
• figure_out_domain_neighbors() : rna_test.cc
• figure_out_fold_tree() : beta_peptide_modeling.cc
• figure_out_icoord_test() : rna_test.cc
• figure_out_nested_positions() : stepwise_centroid_test.cc
• figure_out_secstruct() : check_frag_rmsd.cc , homolog_finder_farna.cc
• figure_out_stems() : rna_test.cc
• figure_out_which_sequence_is_template() : rna_thread.cc , rna_thread_and_minimize.cc
• FILE_DEBUG : hydrophobic_patch_stats_calculator.cc
• file_exists() : genI213_2comp.cc , genP23.cc , genI213_gensym.cc , genI213_nocontacts.cc
• filebase() : dna_relax.cc , phil.hh , capri15.cc
• files_for_openMM_test() : rna_test.cc
• fill_1D_vector() : general_pair_counting.cc
• fill_2D_vector() : general_pair_counting.cc
• fill_3D_vector() : general_pair_counting.cc
• fill_4D_vector() : general_pair_counting.cc
• fill_bond_atoms() : rna_test.cc
• fill_chainTORS_info() : loop_closure_test.cc
• fill_designable_set() : sequencerecovery.cc , bur_nodon_tyr.cc , sequence_recovery.cc , mp_seqrecov.cc
• fill_hbond_e() : holes2_training_data.cc
• fill_hbond_neighbors() : rna_test.cc
• fill_input_poses() : erraser2.cc
• fill_input_poses_based_on_possible_checkpoints() : erraser2.cc
• fill_num_neighbors() : sequencerecovery.cc , surfacescore.cc , sequence_recovery.cc , mp_seqrecov.cc
• fill_optional_options() : build_repeats.cc , helical_param.cc , ufv.cc , remodel.cc
• fill_pose_list() : entropy_test.cc
• fill_required_options() : remodel.cc , helical_param.cc , build_repeats.cc , ufv.cc
• fill_sugar_atom_list() : rna_test.cc
• fill_v_and_M() : turner_rules_test.cc
• fillPoseAndDataList() : evolution.cc
• filter : smooth_2D.m
• filter_combine_long_loop() : swa_rna_main.cc
• filter_frags() : r_frag_quality.cc
• filter_rdcs() : RDCTest.cc
• filter_rdcs_for_frame() : r_local_rdc.cc
• filterAlignment() : filterAlignments.cc
• filterAllAlignments() : filterAlignments.cc
• filterAln() : filterImperfectAln.cc
• filterCore() : filterAlignments.cc
• filterNonCore() : filterAlignments.cc
• find_backbone_rts_in_pose() : domain_assemble.cc
• find_bb_hbond_E : homodimer_design.cc
• find_buried_unsatisfied_polars() : cryst_reporters.hh
• find_centerest_residue() : loodo.cc
• find_clashes() : smhybrid.cc
• find_close_motifs() : incorporate_motifs.cc
• find_close_parents() : entropy_test.cc
• find_closest() : mpframework_test2.cc
• find_closest_atom() : MetalInterface.hh
• find_closest_points() : gcc185_test.cc
• find_clusters() : detect_tight_clusters.cc
• find_cutpair_alignments_in_pose() : domain_assemble.cc
• find_disulfides() : disulfides.hh
• find_dna_chainbreaks() : simple_dna_regression_test.cc , dna_spec_test.cc
• find_dna_rotamers() : dna_spec_test.cc , simple_dna_regression_test.cc
• find_dsf() : genI213_2comp.cc , genI213_gensym.cc , genI213_nocontacts.cc , genP23.cc
• find_farthest() : mpframework_test2.cc
• find_hppatches_distance() : hydrophobic_patch_stats_calculator.cc
• find_hppatches_nb_graph() : hydrophobic_patch_stats_calculator.cc
• find_index() : rna_graft.cc
• find_jacobian() : build_jacobian.f90
• find_middle_of_vector() : easy_target_test.cc
• find_min_permutation() : count_cycpep_sequences.cc
• find_nearest_res() : CutOutDomain.cc
• find_neighbors() : cartesian_ddg.cc
• find_neighbors_directional() : cartesian_ddg.cc
• find_next_repeat_inflection_point() : extractNativeRepeats.cc
• find_nonlocal_segment_alignments_in_pose() : domain_assemble.cc
• find_residues_around_mutation() : rnp_ddg.cc
• find_rsd_nbrs() : domain_assemble.cc
• find_unexplained_density() : density_tools.cc
• FindOptimalHydrophobicThkCOP : find_optimal_hydrophobic_thk.cc
• FindOptimalHydrophobicThkOP : find_optimal_hydrophobic_thk.cc
• finely_sample_base_pair_test() : turner_rules_test.cc
• first_preminimized_namer() : erraser2.cc
• first_zero_pos() : create_hierarchy.cc
• fit_centroid_to_the_best_rot() : fa_to_cenrot_score.cc
• fit_helix_in_map() : fit_helix_in_map.cc
• fitfun() : cmaes_test.cc
• FitMoverOP : r_rmsf.cc , ensemble_analysis.cc , r_rmsf.cc
• fix_alpha_for_pack_phosphate() : pack_phosphates.cc
• fix_cyclic_termini() : PCA_visualizer.cc
• fix_prolines() : make_retroinverso.cc
• fix_sugar_bond_angles_CLOSE_BOND() : rna_test.cc
• fix_sugar_bond_angles_EMPIRICAL() : rna_test.cc
• fixbb_design() : gensym_3bpy_from_dimer.cc
• fixedchains : simple_interfaceanalyzer.cc , InterfaceAnalyzer.cc
• fixH() : cycgly_bbg8t3a.cc , gentetra_bpy_from_znhis.cc , cycsamp.cc , cycgly_target.cc
• flaga : smooth_2D.m
• flagr : smooth_2D.m
• float16 : gpu_mat_vec.hh , gpu_test_Mxform.cc , gpu_test.cc , gpu_score.cc , gpu_linker.cc
• float2 : gpu_linker.cc , gpu_mat_vec.hh , gpu_score.cc , gpu_test.cc , gpu_test_Mxform.cc
• float3 : gpu_linker.cc , gpu_mat_vec.hh , gpu_score.cc , gpu_test.cc , gpu_test_Mxform.cc
• float4 : gpu_linker.cc , gpu_test_Mxform.cc , gpu_test.cc , gpu_mat_vec.hh , gpu_score.cc
• float8 : gpu_mat_vec.hh , gpu_score.cc , gpu_test.cc , gpu_test_Mxform.cc , gpu_linker.cc
• float_as_aidr() : gpu_bit_utils.hh
• FLOAT_COMPARISON_THRESHOLD : test_trRosettaConstraintGenerator.cc , test_trRosettaProtocolMover.cc
• float_vec : turner_two_chain.cc
• FloppyTailMoverOP : FloppyTail_loop.cc
• flxbb_nobu() : bpy.cc , smhybrid.cc , spiro.cc
• FMT_ALWAYS_INLINE : format.h
• FMT_API : core.h
• FMT_ARGS : os.cc
• FMT_ASSERT : core.h
• FMT_BEGIN_NAMESPACE : core.h
• FMT_BUFFER_CONTEXT : core.h
• FMT_CATCH : format.h
• FMT_CLANG_VERSION : core.h
• FMT_CLASS_API : core.h
• FMT_COMPILE : compile.h
• FMT_CONSTEXPR : core.h
• FMT_CONSTEXPR_DECL : core.h
• FMT_CUDA_VERSION : format.h
• FMT_DEPRECATED : core.h
• FMT_DEPRECATED_ALIAS : format.h , core.h
• FMT_DEPRECATED_NUMERIC_ALIGN : format.h
• FMT_DETECTED_NOEXCEPT : core.h
• FMT_ENABLE_IF : core.h
• FMT_END_NAMESPACE : core.h
• FMT_EXCEPTIONS : core.h
• FMT_EXTERN : core.h
• FMT_EXTERN_TEMPLATE_API : core.h
• FMT_FALLTHROUGH : format.h
• FMT_FORMAT_AS() : format.h
• FMT_FUNC : format.h
• FMT_GCC_VERSION : core.h
• FMT_HAS_BUILTIN : format.h
• FMT_HAS_CPP14_ATTRIBUTE : core.h
• FMT_HAS_CPP17_ATTRIBUTE : core.h
• FMT_HAS_CPP_ATTRIBUTE : core.h
• FMT_HAS_CXX11_NOEXCEPT : core.h
• FMT_HAS_FEATURE : core.h
• FMT_HAS_GXX_CXX11 : core.h
• FMT_HAS_INCLUDE : core.h
• FMT_ICC_VERSION : core.h , format.h
• FMT_INLINE : core.h
• FMT_INLINE_NAMESPACE : core.h
• FMT_INSTANTIATION_DEF_API : core.h
• FMT_MAYBE_UNUSED : format.h
• FMT_MSC_VER : core.h
• FMT_NOEXCEPT : core.h
• FMT_NOINLINE : format.h
• FMT_NOMACRO : chrono.h
• FMT_NORETURN : core.h
• FMT_NVCC : core.h
• FMT_OVERRIDE : core.h
• FMT_POSIX : os.h
• FMT_POSIX_CALL : os.h
• FMT_POWERS_OF_10 : format-inl.h
• FMT_RANGE_OUTPUT_LENGTH_LIMIT : ranges.h
• FMT_REDUCE_INT_INSTANTIATIONS : format.h
• FMT_RETRY : os.h
• FMT_RETRY_VAL : os.h
• FMT_SAFE_DURATION_CAST : chrono.h
• FMT_SAFEBUFFERS : format.h
• FMT_SNPRINTF : format-inl.h
• FMT_STRING : format.h
• FMT_STRING_IMPL : format.h
• FMT_SUPPRESS_MSC_WARNING : core.h
• FMT_SYSTEM : os.h
• FMT_THROW : format.h
• FMT_TRY : format.h
• FMT_TYPE_CONSTANT : core.h
• FMT_UNICODE : core.h
• FMT_USE_CONSTEXPR : core.h
• FMT_USE_DOUBLE : format.h
• FMT_USE_FCNTL : os.h
• FMT_USE_FLOAT : format.h
• FMT_USE_FULL_CACHE_DRAGONBOX : format.h
• FMT_USE_INLINE_NAMESPACES : core.h
• FMT_USE_INT128 : core.h
• FMT_USE_LONG_DOUBLE : format.h
• FMT_USE_NOEXCEPT : core.h
• FMT_USE_UDL_TEMPLATE : format.h
• FMT_USE_USER_DEFINED_LITERALS : format.h
• FMT_VERSION : core.h
• fname : gen_env_dep_orient_decompose.m , draw_gen_env_dep_orient_decompose.m
• fname2pdbcode() : helix_assembly.cc
• fold_tree_from_loops() : loop_minimize.cc , sidechain_min.cc
• fold_tree_generator() : fold_from_loops.cc , fold_from_loops_devel.cc
• FoldptnOP : foldptn.cc
• foo() : T60.pybind11.hpp , T42.stl.names.multimap.hpp , T60.pybind11.hpp , T42.stl.names.set.hpp , T42.stl.names.multiset.hpp , T42.stl.names.multimap.hpp , T60.pybind11.hpp , T42.stl.names.hpp , T42.stl.names.multi.hpp , T00.basic.hpp , T02.function.hpp , T05.default.hpp , T17.anonymous.hpp , T20.template.hpp , T30.include.hpp , T40.stl.hpp , T42.stl.names.hpp , T42.stl.names.map.hpp , T42.stl.names.multimap.hpp , T42.stl.names.multi.hpp , T42.stl.names.map.hpp , T42.stl.names.hpp
• foo< double >() : T20.template.hpp
• foo< int >() : T20.template.hpp
• foo_baseCOP() : SharedPtrDemo.cc
• foo_baseCSP() : SharedPtrDemo.cc
• foo_baseOP() : SharedPtrDemo.cc
• foo_baseSP() : SharedPtrDemo.cc
• foo_char() : T00.basic.hpp
• foo_const_intSP() : SharedPtrDemo.cc
• foo_cp_not_binded() : T02.function.hpp
• foo_cr() : T02.function.hpp
• foo_double() : T00.basic.hpp
• foo_f0() : T05.default.hpp
• foo_f1() : T02.function.hpp , T05.default.hpp
• foo_f2() : T02.function.hpp
• foo_f2_not_binded() : T05.default.hpp
• foo_f3() : T02.function.hpp
• foo_f4_not_binded() : T02.function.hpp
• foo_f5() : T02.function.hpp
• foo_f7() : T02.function.hpp
• foo_f8() : T02.function.hpp
• foo_f9() : T02.function.hpp
• foo_float() : T00.basic.hpp
• foo_int() : T00.basic.hpp
• foo_p() : T02.function.hpp
• foo_p_not_binded() : T02.function.hpp
• foo_r() : T02.function.hpp
• foo_r_not_binded() : T02.function.hpp
• foo_root() : T50.namespace_binder.hpp
• foo_void_p() : T00.basic.hpp
• for() : gpu_octree_impl_test.cc
• force_output : simple_interfaceanalyzer.cc
• format() : color.h , compile.h , core.h , locale.h
• format_args_t : format.h
• format_context : core.h
• format_context_t : format.h
• format_parse_context : core.h
• format_specs : format.h
• format_system_error() : format-inl.h , format.h
• format_to() : locale.h , compile.h , format.h , compile.h , core.h , color.h
• format_to_n() : compile.h , core.h
• formatstr() : pdb_gen_cryst.cc
• formatted_size() : compile.h , core.h
• forward_in_time() : mammoth_hack.cc
• fprintf() : draw_gen_env_dep_pair_decompose.m , printf.h , gen_env_dep_pair_decompose.m , gen_env_dep_orient_decompose.m , draw_gen_env_dep_pair_decompose.m , draw_gen_env_dep_orient_decompose.m
• frag_extract_test() : fragment_extract.cc
• FRAGFILE_LOCATION : topo_driver.cc
• FragID_ClusterList : r_local_rdc.cc
• free() : T32.call_guard.hpp
• FREEGLUT : freeglut_std.h
• FREEGLUT_VERSION_2_0 : freeglut_std.h
• frpb_mmstd : FastRelax.bench.hh
• frpb_sc12 : FastRelax.bench.hh
• frpb_sc12he : FastRelax.bench.hh
• frpb_sc12sp2 : FastRelax.bench.hh
• full_length_rmsd_over_reside_list_general() : swa_rna_util.cc
• full_protein_repack() : loop_model.hh
• func : place_fragments_into_density.cc
• function : load_pair_env_table.m , gausswin.m , load_pair_env_table_ref.m , load_tables.m , gausswin.m , load_angle_r_table.m , load_pair_env_table.m , pre_fill_dfire.m , pre_fill_dfire_2D.m , load_env_table_ref.m , load_env_table.m , calc_Pij.m , calc_Pi_sc.m , calc_Pi_ang_sc.m , calc_Pi_ang.m , calc_Pi.m , calc_pair_matrix.m , calc_NtoP.m
• function_pointer : T02.function.hpp
• function_reference : T02.function.hpp
• function_type : T02.function.hpp , T05.default.hpp