- b -

• back_in_time_1d() : mammoth_hack.cc
• back_in_time_2d() : mammoth_hack.cc
• backbone_sampling() : turner_two_chain.cc
• backrub_min_test() : test1.cc
• backrub_protocol() : easy_target_test.cc
• backtrace_string() : backtrace.hh
• bacteriorhodpsin_task() : membrane_ddG.cc
• balls_pdb() : test_gradient.cc
• balls_rms() : test_gradient.cc
• base_doublet_rmsd_test() : turner_rules_test.cc
• base_name() : pilot_packstat.cc , packstat.cc
• base_pair_to_base_pair_test() : turner_rules_test.cc
• base_type_num() : pdbstats_test.cc
• bb2bb() : gpu_xforms.hh
• bb_bins_from_pose() : analyze_casp9.cc , angle_recovery_stats.cc
• bb_sample() : cycgly_bbg8t3a.cc , cycgly_canonical.cc , cycgly_target.cc , cycsamp.cc , gen_cyc_gly.cc , gen_cyc_gly_cst.cc
• BBG8T3A_sample() : cycsamp.cc , cycgly_target.cc , cycgly_bbg8t3a.cc
• benchmark_contacts() : hotspot_hash.cc
• benzene_pair_score_test() : benzene_test.cc
• beta() : draw_gen_env_dep_orient_decompose.m , draw_gen_env_dep_pair_decompose.m , gen_env_dep_orient_decompose.m , gen_env_dep_pair_decompose.m
• betapeptide_setomega() : PCA_visualizer.cc , test_KIC_betapeptide.cc , make_ideal_betapeptide.cc , make_betahelicalbundle.cc , design_cycpeptide_MPI.cc , bettercluster.cc , make_a3b_bundle.cc
• betapeptide_setphi() : make_a3b_bundle.cc , bettercluster.cc , design_cycpeptide_MPI.cc , make_betahelicalbundle.cc , make_ideal_betapeptide.cc , PCA_visualizer.cc , test_KIC_betapeptide.cc
• betapeptide_setpsi() : PCA_visualizer.cc , make_ideal_betapeptide.cc , test_KIC_betapeptide.cc , bettercluster.cc , design_cycpeptide_MPI.cc , make_a3b_bundle.cc , make_betahelicalbundle.cc
• betapeptide_settheta() : make_a3b_bundle.cc , bettercluster.cc , design_cycpeptide_MPI.cc , make_betahelicalbundle.cc , make_ideal_betapeptide.cc , PCA_visualizer.cc , test_KIC_betapeptide.cc
• betas_match() : bettercluster.cc
• bg() : color.h
• bin2string() : cycgly_bbg8t3a.cc , rblinker2_test.cc , rblinker2_overlay_bound.cc , rblinker2.cc , cycsamp.cc , cycgly_target.cc
• bin_angle() : peptoid_rotlib_test2.cc
• bind_std_array() : T20.template.variadic.ref.cpp
• bind_std_forward_list() : T42.stl.names.ref.cpp
• bind_std_functional_hash() : T42.stl.names.set.ref.cpp , T42.stl.names.multi.ref.cpp , T42.stl.names.multiset.ref.cpp , T42.stl.names.map.ref.cpp , T42.stl.names.multimap.ref.cpp
• bind_std_stl_deque() : T42.stl.names.ref.cpp
• bind_std_stl_function() : T42.stl.names.map.ref.cpp , T42.stl.names.multi.ref.cpp , T42.stl.names.multimap.ref.cpp , T42.stl.names.multiset.ref.cpp , T42.stl.names.set.ref.cpp
• bind_std_stl_list() : T42.stl.names.map.ref.cpp
• bind_std_stl_multiset() : T42.stl.names.multi.ref.cpp
• bind_std_stl_vector() : T40.stl.ref.cpp , T42.stl.names.ref.cpp
• bind_std_stl_vector_1() : T42.stl.names.ref.cpp
• bind_std_T40_stl() : T40.stl.ref.cpp
• bind_std_unordered_map() : T42.stl.names.map.ref.cpp , T42.stl.names.multimap.ref.cpp
• bind_std_unordered_set() : T42.stl.names.multi.ref.cpp , T42.stl.names.set.ref.cpp
• bind_T00_basic() : T00.basic.ref.cpp
• bind_T00_basic_1() : T00.basic.ref.cpp
• bind_T00_basic_2() : T00.basic.ref.cpp
• bind_T01_enum() : T01.enum.ref.cpp
• bind_T01_enum_1() : T01.enum.ref.cpp
• bind_T02_function() : T02.function.ref.cpp
• bind_T05_default() : T05.default.ref.cpp
• bind_T07_class() : T07.class.ref.cpp
• bind_T07_class_match_args() : T07.class.match_args.ref.cpp
• bind_T08_constructor() : T08.constructor.ref.cpp
• bind_T09_overload() : T09.overload.ref.cpp
• bind_T10_inheritance() : T10.inheritance.ref.cpp
• bind_T10_virtual_inheritance() : T10.virtual_inheritance.ref.cpp
• bind_T11_override() : T11.override.ref.cpp
• bind_T12_insertion_operator() : T12.insertion_operator.ref.cpp
• bind_T12_insertion_operator_1() : T12.insertion_operator.ref.cpp
• bind_T12_insertion_operator_2() : T12.insertion_operator.ref.cpp
• bind_T12_insertion_operator_3() : T12.insertion_operator.ref.cpp
• bind_T12_insertion_operator_4() : T12.insertion_operator.ref.cpp
• bind_T12_operator() : T12.operator.ref.cpp
• bind_T15_copy() : T15.copy.ref.cpp
• bind_T15_inner_class() : T15.inner_class.ref.cpp
• bind_T15_inner_class_1() : T15.inner_class.ref.cpp
• bind_T15_inner_class_2() : T15.inner_class.ref.cpp
• bind_T15_inner_class_3() : T15.inner_class.ref.cpp
• bind_T15_inner_class_fwd() : T15.inner_class.fwd.ref.cpp
• bind_T17_anonymous() : T17.anonymous.ref.cpp
• bind_T20_template() : T20.template.ref.cpp
• bind_T20_template_variadic() : T20.template.variadic.ref.cpp
• bind_T30_include() : T30.include.ref.cpp
• bind_T30_include_incl_a_include() : T30.include.ref.cpp
• bind_T30_include_incl_b_include() : T30.include.ref.cpp
• bind_T31_include_for_class_incl_a_include() : T31.include_for_class.ref.cpp
• bind_T31_include_for_class_incl_b_include() : T31.include_for_class.ref.cpp
• bind_T32_call_guard() : T32.call_guard.ref.cpp
• bind_T33_buffer_protocol() : T33.buffer_protocol.ref.cpp
• bind_T40_stl() : T40.stl.ref.cpp
• bind_T42_stl_names() : T42.stl.names.ref.cpp
• bind_T42_stl_names_map() : T42.stl.names.map.ref.cpp
• bind_T42_stl_names_multi() : T42.stl.names.multi.ref.cpp
• bind_T42_stl_names_multimap() : T42.stl.names.multimap.ref.cpp
• bind_T42_stl_names_multiset() : T42.stl.names.multiset.ref.cpp
• bind_T42_stl_names_set() : T42.stl.names.set.ref.cpp
• bind_T43_stl_pybind11_include_stl() : T43.stl.pybind11_include_stl.ref.cpp
• bind_T50_add_on_binder() : T50.add_on_binder.ref.cpp
• bind_T50_namespace_binder() : T50.namespace_binder.ref.cpp
• bind_T50_namespace_binder_1() : T50.namespace_binder.ref.cpp
• bind_T50_namespace_binder_2() : T50.namespace_binder.ref.cpp
• bind_T60_custom_shared() : T60.custom_shared.ref.cpp
• bind_T60_pybind11() : T60.pybind11.ref.cpp
• bind_T70_module_local() : T70.module_local.ref.cpp
• bind_T70_module_local_1() : T70.module_local.ref.cpp
• bind_T70_options() : T70.options.ref.cpp
• bind_T70_options_1() : T70.options.ref.cpp
• bind_T70_options_2() : T70.options.ref.cpp
• bind_T71_module_local() : T71.module_local.ref.cpp
• bind_T71_module_local_1() : T71.module_local.ref.cpp
• bind_T80_custom_trampoline() : T80.custom_trampoline.ref.cpp
• bind_T81_custom_trampoline_with_args() : T81.custom_trampoline_with_args.ref.cpp
• BinderToolCategory() : options.cpp
• bitsasfloat() : gpu_bit_utils.hh
• bk_test() : test1.cc , symtest.cc
• bk_test2() : test1.cc
• block_stack_test() : block_stack_test.cc
• blosum_score_alignment() : anneal_align.cc
• bound_petf_clash() : rblinker2_overlay_bound.cc
• bp_score_calibrate() : turner_two_chain.cc
• brt_clash() : isct_test.cc
• brute_force_matcher() : turner_rules_test.cc
• brute_mindis() : symdock_enum_3_1.cc
• build_algned_linker() : rblinker2_test.cc , rblinker2.cc , rblinker2_overlay_bound.cc
• build_and_score_res1_against_res2() : sweep_respair_energies.cc
• build_asn_motifs() : use_asn_motifs.cc
• build_bb_independent_rotamers() : find_position_matches_using_inverse_rotamers.cc
• build_full_model_test() : build_full_model.cc
• build_helix_test() : protein_helix_assemble.cc
• build_inverso_sequence() : make_retroinverso.cc
• build_jacobian() : build_jacobian.f90
• build_next_nucleotide_test() : rna_test.cc
• build_on_helix() : OLD_TRIAL_protein_helix_assemble.cc
• build_polymer() : fit_helixparams.cc
• build_pose_by_jumps_from_domains() : domain_assemble.cc
• build_template() : build_template.cc
• build_toy_pose() : virtual_residue_trees.cc
• bump_check() : erraser2.cc
• BUNS_CALC_NAME() : buns_report.cc
• buns_for_pose() : find_buns.cc
• buns_stats() : vsasa_pdbcode_res.cc
• bunsats() : buns.cc
• byres_analysis() : byres_data.cc , hbscan.cc
• bzip_test() : dna_spec_test.cc , simple_dna_regression_test.cc