- f -

• fa_cenpack_pdbstats_from_pose() : pdbstats_test.cc
• fa_refine_and_design() : dubois.cc , spiro.cc , smhybrid.cc
• fa_scorefxn_test() : test1.cc
• factorial() : bettercluster.cc
• facts_test() : test_multithreaded_ramapp_load.cc
• FAILURE() : glycomutagenesis.cc , test_coenzymes.cc , test_CarbohydrateInfo.cc , test_carbohydrate_scoring.cc , test_carbohydrate_docking.cc , phosphorylation.cc , N-terminal_acetylation.cc , glycosyltransfer.cc , DNA_methylation.cc , dock_glycans.cc , mucintypeglycosylation.cc , design_glycans.cc , test_glycan_linkages.cc , design_glycans.cc
• fast_clash_check() : byres_data.cc , hbscan.cc , generate_hbond_geometry.cc
• fastexp() : flail.cc
• fastpow2() : flail.cc
• fclose() : gen_env_dep_pair_decompose.m , draw_gen_env_dep_pair_decompose.m
• fd_instantiated_by_use_in_function_not_binded() : T20.template.hpp
• fdrule() : aggregate_coarse_rna_vdw.cc
• feed_rms_and_clash_scores_to_database() : BundlePairRmsdCalculatorGPU.cc , SmotifPairRmsdCalculatorGPU.CC
• fere_torsions() : gpu_linker.cc
• fetch_atom_names() : extract_motifs.cc
• ff_instantiated_by_use_in_function_not_binded() : T20.template.hpp
• fg() : color.h
• fi() : T20.template.hpp , T61.smart_holder.hpp
• fi_instantiated_by_use_in_function() : T20.template.hpp , T61.smart_holder.hpp
• figure_out_best_alpha_beta_gamma() : stepwise_helix_test.cc
• figure_out_domain_map() : rna_test.cc
• figure_out_domain_neighbors() : rna_test.cc
• figure_out_fold_tree() : beta_peptide_modeling.cc
• figure_out_icoord_test() : rna_test.cc
• figure_out_nested_positions() : stepwise_centroid_test.cc
• figure_out_secstruct() : check_frag_rmsd.cc , homolog_finder_farna.cc
• figure_out_stems() : rna_test.cc
• figure_out_which_sequence_is_template() : rna_thread.cc , rna_thread_and_minimize.cc
• file_exists() : genP23.cc , genI213_nocontacts.cc , genI213_gensym.cc , genI213_2comp.cc
• filebase() : capri15.cc , dna_relax.cc , phil.hh
• files_for_openMM_test() : rna_test.cc
• fill_1D_vector() : general_pair_counting.cc
• fill_2D_vector() : general_pair_counting.cc
• fill_3D_vector() : general_pair_counting.cc
• fill_4D_vector() : general_pair_counting.cc
• fill_bond_atoms() : rna_test.cc
• fill_chainTORS_info() : loop_closure_test.cc
• fill_designable_set() : sequencerecovery.cc , bur_nodon_tyr.cc , sequence_recovery.cc , mp_seqrecov.cc
• fill_hbond_e() : holes2_training_data.cc
• fill_hbond_neighbors() : rna_test.cc
• fill_input_poses() : erraser2.cc
• fill_input_poses_based_on_possible_checkpoints() : erraser2.cc
• fill_num_neighbors() : surfacescore.cc , mp_seqrecov.cc , sequence_recovery.cc , sequencerecovery.cc
• fill_optional_options() : build_repeats.cc , helical_param.cc , ufv.cc , remodel.cc
• fill_pose_list() : entropy_test.cc
• fill_required_options() : remodel.cc , ufv.cc , build_repeats.cc , helical_param.cc
• fill_sugar_atom_list() : rna_test.cc
• fill_v_and_M() : turner_rules_test.cc
• fillPoseAndDataList() : evolution.cc
• filter_combine_long_loop() : swa_rna_main.cc
• filter_frags() : r_frag_quality.cc
• filter_rdcs() : RDCTest.cc
• filter_rdcs_for_frame() : r_local_rdc.cc
• filterAlignment() : filterAlignments.cc
• filterAllAlignments() : filterAlignments.cc
• filterAln() : filterImperfectAln.cc
• filterCore() : filterAlignments.cc
• filterNonCore() : filterAlignments.cc
• find_backbone_rts_in_pose() : domain_assemble.cc
• find_buried_unsatisfied_polars() : cryst_reporters.hh
• find_centerest_residue() : loodo.cc
• find_clashes() : smhybrid.cc
• find_close_motifs() : incorporate_motifs.cc
• find_close_parents() : entropy_test.cc
• find_closest() : mpframework_test2.cc
• find_closest_atom() : MetalInterface.hh
• find_closest_points() : gcc185_test.cc
• find_clusters() : detect_tight_clusters.cc
• find_cutpair_alignments_in_pose() : domain_assemble.cc
• find_disulfides() : disulfides.hh
• find_dna_chainbreaks() : dna_spec_test.cc , simple_dna_regression_test.cc
• find_dna_rotamers() : dna_spec_test.cc , simple_dna_regression_test.cc
• find_dsf() : genP23.cc , genI213_nocontacts.cc , genI213_gensym.cc , genI213_2comp.cc
• find_farthest() : mpframework_test2.cc
• find_hppatches_distance() : hydrophobic_patch_stats_calculator.cc
• find_hppatches_nb_graph() : hydrophobic_patch_stats_calculator.cc
• find_index() : rna_graft.cc
• find_jacobian() : build_jacobian.f90
• find_middle_of_vector() : easy_target_test.cc
• find_min_permutation() : count_cycpep_sequences.cc
• find_nearest_res() : CutOutDomain.cc
• find_neighbors() : cartesian_ddg.cc
• find_neighbors_directional() : cartesian_ddg.cc
• find_next_repeat_inflection_point() : extractNativeRepeats.cc
• find_nonlocal_segment_alignments_in_pose() : domain_assemble.cc
• find_residues_around_mutation() : rnp_ddg.cc
• find_rsd_nbrs() : domain_assemble.cc
• find_unexplained_density() : density_tools.cc
• finely_sample_base_pair_test() : turner_rules_test.cc
• first_preminimized_namer() : erraser2.cc
• first_zero_pos() : create_hierarchy.cc
• fit_centroid_to_the_best_rot() : fa_to_cenrot_score.cc
• fit_helix_in_map() : fit_helix_in_map.cc
• fitfun() : cmaes_test.cc
• fix_alpha_for_pack_phosphate() : pack_phosphates.cc
• fix_cyclic_termini() : PCA_visualizer.cc
• fix_prolines() : make_retroinverso.cc
• fix_sugar_bond_angles_CLOSE_BOND() : rna_test.cc
• fix_sugar_bond_angles_EMPIRICAL() : rna_test.cc
• fixbb_design() : gensym_3bpy_from_dimer.cc
• fixH() : gentetra_bpy_from_znhis.cc , cycgly_target.cc , cycgly_bbg8t3a.cc , cycsamp.cc
• float_as_aidr() : gpu_bit_utils.hh
• flxbb_nobu() : bpy.cc , smhybrid.cc , spiro.cc
• FMT_FORMAT_AS() : format.h
• fname2pdbcode() : helix_assembly.cc
• fold_tree_from_loops() : loop_minimize.cc , sidechain_min.cc
• fold_tree_generator() : fold_from_loops.cc , fold_from_loops_devel.cc
• foo() : T60.pybind11.hpp , T42.stl.names.multimap.hpp , T60.pybind11.hpp , T42.stl.names.set.hpp , T42.stl.names.multiset.hpp , T42.stl.names.multimap.hpp , T00.basic.hpp , T60.pybind11.hpp , T42.stl.names.multi.hpp , T02.function.hpp , T05.default.hpp , T17.anonymous.hpp , T20.template.hpp , T30.include.hpp , T40.stl.hpp , T42.stl.names.hpp , T42.stl.names.map.hpp , T42.stl.names.hpp , T42.stl.names.multimap.hpp , T42.stl.names.multi.hpp , T42.stl.names.map.hpp , T42.stl.names.hpp
• foo< double >() : T20.template.hpp
• foo< int >() : T20.template.hpp
• foo_baseCOP() : SharedPtrDemo.cc
• foo_baseCSP() : SharedPtrDemo.cc
• foo_baseOP() : SharedPtrDemo.cc
• foo_baseSP() : SharedPtrDemo.cc
• foo_char() : T00.basic.hpp
• foo_const_intSP() : SharedPtrDemo.cc
• foo_cp_not_binded() : T02.function.hpp
• foo_cr() : T02.function.hpp
• foo_double() : T00.basic.hpp
• foo_f0() : T05.default.hpp
• foo_f1() : T02.function.hpp , T05.default.hpp
• foo_f2() : T02.function.hpp
• foo_f2_not_binded() : T05.default.hpp
• foo_f3() : T02.function.hpp
• foo_f4_not_binded() : T02.function.hpp
• foo_f5() : T02.function.hpp
• foo_f7() : T02.function.hpp
• foo_f8() : T02.function.hpp
• foo_f9() : T02.function.hpp
• foo_float() : T00.basic.hpp
• foo_int() : T00.basic.hpp
• foo_p() : T02.function.hpp
• foo_p_not_binded() : T02.function.hpp
• foo_r() : T02.function.hpp
• foo_r_not_binded() : T02.function.hpp
• foo_root() : T50.namespace_binder.hpp
• foo_void_p() : T00.basic.hpp
• for() : gpu_octree_impl_test.cc
• format() : color.h , compile.h , core.h , locale.h
• format_system_error() : format-inl.h , format.h
• format_to() : compile.h , locale.h , format.h , core.h , compile.h , color.h
• format_to_n() : compile.h , core.h
• formatstr() : pdb_gen_cryst.cc
• formatted_size() : core.h , compile.h
• forward_in_time() : mammoth_hack.cc
• fprintf() : gen_env_dep_pair_decompose.m , printf.h , gen_env_dep_pair_decompose.m , gen_env_dep_orient_decompose.m , draw_gen_env_dep_pair_decompose.m , draw_gen_env_dep_orient_decompose.m
• frag_extract_test() : fragment_extract.cc
• free() : T32.call_guard.hpp
• full_length_rmsd_over_reside_list_general() : swa_rna_util.cc
• full_protein_repack() : loop_model.hh