- t -

• T400_Refinement() : py_rosetta_test.cc
• tag_from_pose() : holes.cc , holes_test.cc , atom_type_rdf.cc , holes2_training_data.cc
• tar_motif_test() : coarse_rna_test.cc
• target_constraints() : cycgly_target.cc
• termini() : mp_parameters.cc
• test() : pack_stat_energy.cc , test_surf_vol.cc , test_leerichards.cc , holes_training_data.cc , holes_pbpdb.cc , getDistConstraints.cc , dubois.cc , tseng_minimize.cc , check_frag_rmsd.cc , benchmark_k_medoids.cc , rotamer_test.cc , non_natural_na.cc
• TEST() : pentcb_test.cc , pentcb.cc
• test() : holes_daball_input.cc
• test_actcoord() : calculate_distances.cc
• test_bridgeObjects() : test_kc.cc
• test_chi_xform() : gpu_mat_vec.hh
• test_chunk() : topo_driver.cc
• test_cofactor() : test_coenzymes.cc
• test_ddg() : pack_ddg.cc
• test_deriv() : test_gradient.cc
• test_deriv_pose() : test_gradient.cc
• test_dunbrack_io() : test1.cc
• test_fake_silent() : metric.cc
• test_find_neighbors() : xyzStripeHash_test.cc
• test_function() : parin_test.cc
• test_GA() : GA.cc
• test_gb() : test1.cc
• test_gpu_inlining() : gpu_cpu_speedtest.cc
• test_gpu_speed() : gpu_speedtest.cc , gpu_speedtest.hh
• test_gradient() : test_gradient.cc
• test_include_stl() : T43.stl.pybind11_include_stl.hpp
• test_int() : filter.cc
• test_k_square() : gpu_test_k_square.hh
• test_kc() : test_kc.cc
• test_kc2() : test_kc.cc
• test_known_value() : test_leerichards.cc
• test_lh_counts() : test_loop_hash.cc
• test_MAT_VEC() : gpu_mat_vec.hh
• test_membrane_chain() : membrane_integration.cc , mpframework_integration.cc
• test_membrane_conformation() : mpframework_integration.cc , membrane_integration.cc
• test_membrane_fold_tree() : membrane_integration.cc , mpframework_integration.cc
• test_membrane_scoring_highres() : mpframework_integration.cc
• test_membrane_scoring_lowres() : membrane_integration.cc , mpframework_integration.cc
• test_NM() : testNM.cc
• test_NMmin() : testNM.cc
• test_NMrelaxer() : testNM.cc
• test_numerical_deriv() : check_cubic_conv.cc
• test_pack14() : gpu_pack14.h
• test_PCA_eigen() : karen_compare_different_proteins.cc
• test_protein_rna() : test_rna_protein.cc
• test_rama() : test1.cc
• test_Random() : TracerTest.cc
• test_real() : metric.cc
• test_refold() : gpu_linker.cc
• test_replicate_xform() : test_loop_hash.cc
• test_scorefxn_io() : test1.cc
• test_suck_res() : minimize_cavities.cc
• test_sugar() : test_CarbohydrateInfo.cc
• test_talaris() : mpframework_integration.cc
• test_Tracer() : TracerTest.cc
• test_Vec() : filter.cc
• test_vs_dots() : test_leerichards.cc
• testone() : cxdock.cc
• text() : draw_gen_env_dep_pair.m , draw_gen_env_dep_pair_decompose.m , cal_env.m , gen_env_dep_pair_decompose.m , gen_vdw_radius_soft.m
• tf_specificity_test() : dna_spec_test.cc , simple_dna_regression_test.cc , dna_spec_test.cc
• th1_table() : load_angle_r_table.m , draw_gen_env_dep_orient_decompose.m , gen_env_dep_orient.m , gen_env_dep_orient_decompose.m , gen_env_dep_orient_draw.m , load_angle_r_table.m
• th2_table() : load_angle_r_table.m
• thermal_sampler() : thermal_sampler.cc , thermal_sampler_alpha.cc
• third_preminimized_namer() : erraser2.cc
• thread_fxn() : test_multithreaded_pdb_load.cc , test_multithreaded_ramapp_load.cc
• thread_num() : helix_assembly.cc , heterodock.cc , gensym_3bpy_from_dimer.cc , dxdock_movie.cc , d3_bpy_linker.cc , CXdock.cc
• throw_the_next_time_an_assertion_failure_is_hit() : backtrace.cc
• time_highres() : CL.hh , xyzStripeHash_test.cc
• tm_superimpose() : extractNativeRepeats.cc
• TMprojection() : mp_parameters.cc
• to_integer() : smhybrid.cc
• to_left() : mpframework_test2.cc
• to_string() : format.h
• to_string_view() : core.h
• to_wstring() : format.h
• tokenize_line() : spec_prof_compare.cc
• tokenize_string() : tnm_sampler.cc , analyze_ddG.cc , find_position_matches_using_inverse_rotamers.cc , InterfaceMutMaker.cc
• torsion2big_bin() : phil.hh , per_residue_features.cc , angle_recovery_stats.cc , analyze_casp9.cc , angles.cc
• torsion2big_bin_string() : phil.hh
• torsion2bin() : turner_test_double_helix.cc
• torsion2decoy() : turner_test_one_chain.cc
• torsion2id() : turner_test_one_chain.cc
• torsion2pdb() : turner_two_chain.cc
• torsion_convert() : turner_test_one_chain.cc
• toXform() : symdock_enum_3_1.cc
• traceCAs() : pseudo_ca_trace.cc
• TracerDiskSpaceTest() : OptionsTest.cc , TracerTest.cc
• trans() : mixedMC.cc
• TRANS_OMG_LOWER_RANGE() : peptoid_rotlib_test2.cc
• TRANS_OMG_UPPER_RANGE() : peptoid_rotlib_test2.cc
• trans_pose() : symdock_enum_3_1.cc , nisod.cc , symdock_enum_3_1.cc , coiled_coil_zn.cc , symdock_enum.cc , coiled_coil.cc , matdes_design_2comp.cc
• TRANS_UPPER_CIS_LOWER_SPLIT() : peptoid_rotlib_test2.cc
• transform_pose() : docking_inputpatchdock_mpi.cc , read_pose_jump_orientation_repack.cc
• transforms_equiv() : cryst_gen.cc , cryst_reporters.hh
• transforms_equiv_mod1() : cryst_gen.cc
• transmit_additional_info() : design_cycpeptide_MPI.cc
• transmit_silent_struct() : design_cycpeptide_MPI.cc
• transposed() : gpu_mat_vec.hh
• traverse_for_hbonds() : hbond_connect.cc
• trim_and_add_jump_data() : bettercluster.cc
• trim_back_t033_pose() : capri15.cc
• trim_dock_rebuild_relax_test() : capri15.cc
• trim_dock_rebuild_relax_test_rhiju() : capri15.cc
• trim_pdb() : SmotifHasher.cc
• trim_pose_termini() : domain_assemble.cc
• trim_redundant_local_minima() : sweep_respair_energies.cc
• turner_rules_test() : turner_rules_test_WORKS.cc
• tweak_coords() : atom_tree_check.cc
• two_base_pairs_test() : turner_rules_test.cc
• two_base_pairs_via_loop_closure_test() : turner_rules_test.cc
• two_region_rmsd() : calcFractionFolded.cc , unalignedEvaluate.cc
• twoChainPose() : PeptideDeriver.cc
• tyr_ct() : evalFullLength.cc