Here is a list of all file members with links to the files they belong to:

- l -

• L : draw_gen_env_dep_pair_decompose.m , draw_gen_env_dep_pair.m , gen_env_dep_pair_decompose.m , cal_env.m , gen_env_dep_pair.m
• largest_cluster() : pcs_fragments_to_distances.cc , pcs_fragments_to_distances2.cc , pcs_fragments_to_distances_wRMS.cc , pcs_distances_for_fragpicker.cc
• lariat_modeling() : lariat_modeling.cc
• LDConverterMoverCOP : ld_converter.cc
• LDConverterMoverOP : ld_converter.cc
• leaf_tag : Tag.cc
• length2f() : gpu_mat_vec.hh
• length2v() : gpu_mat_vec.hh
• lengthf() : gpu_mat_vec.hh
• lengthv() : gpu_mat_vec.hh
• LEU : gen_vdw_radius.m , load_pair_env_table.m , load_angle_r_table.m , gen_env_dep_pair_decompose.m , cal_env.m , gen_env_dep_pair.m , gen_env_dep_orient_draw.m , gen_env_dep_orient_decompose.m , gen_env_dep_orient.m , load_pair_env_table_ref.m , load_pair_env_table.m , draw_matrix.m , draw_gen_env_dep_pair_decompose.m , draw_gen_env_dep_pair.m , draw_gen_env_dep_orient_decompose.m
• levelof() : sphere_hierarchy.cc
• libsvm_version : Svm.cc , Svm.hh
• LIBSVM_VERSION : Svm.hh
• lid_ : CL.hh
• lig_res_num : david_align_and_recompute_score_and_rmsd.cc , karen_compare_pocket_rmsd.cc , minimize_ppi.cc , simon_darc_minimize.cc , ragul_darc_minimize.cc , david_recompute_score_and_rmsd.cc , david_align_append_and_recompute_score_and_rmsd.cc
• ligand_centroid() : ligand_transform_with_pcs.cc
• ligand_dock_main_jd1() : ligand_dock_jd1.cc
• ligand_rmsd() : minimize_ppi.cc
• ligand_test() : vllb.cc
• LigandRepackMinimizeProtocolCOP : ligand_rpkmin_jd1.cc , ligand_rpkmin.cc
• LigandRepackMinimizeProtocolOP : ligand_rpkmin_jd1.cc , ligand_rpkmin.cc
• ligrot_test() : test1.cc
• line : Svm.cc
• line_cone_intersection() : genmatch_3bpy.cc , gensym_3bpy_from_dimer.cc , gentetra.cc , gentetra_bpy_from_znhis.cc , gentetra_from_trimer.cc
• LINEAR : Svm.hh
• linewidth : draw_gen_env_dep_pair_decompose.m , cal_env.m , gen_env_dep_pair_decompose.m , gen_vdw_radius_soft.m
• linmin() : cycsamp.cc
• list_allowable_mutations() : constellation_list.cc
• lk_ball_wtd_deriv_test() : test1.cc
• LM_DWARF : lmmin.cc
• LM_MACHEP : lmmin.cc
• LM_SQRT_DWARF : lmmin.cc
• LM_SQRT_GIANT : lmmin.cc
• LM_USERTOL : lmmin.cc
• load_as_fullatom() : restype_converter.cc
• load_bb_torsions_into_vector() : macrocycle_sampling.cc
• load_checkpoint() : fold_from_loops.hh , fold_from_loops_devel.hh
• load_coordinates_from_database() : BundlePairRmsdCalculatorGPU.cc , SmotifPairRmsdCalculatorGPU.CC
• load_coords() : byres_data.cc , domain_assemble.cc , hbscan.cc
• load_loops_from_file() : helical_param.cc , ufv.cc , remodel.cc
• load_models() : params_opt.cc
• load_pose() : membrane_foldtree.cc , membrane_foldtree2.cc , membrane_info.cc
• load_set() : tgtres_polar_sho_energies.cc , interface_energy.cc
• LoadMembraneMoverOP : load_membrane_pose.cc
• local_rms() : holes2_training_data.cc
• local_rms_window() : holes2_training_data.cc
• LocalRmsdOP : local_rmsd.cc
• localtime() : chrono.h
• loop_closure_test() : loop_closure_test.cc , stepwise_loop_test.cc
• loop_hash_library : rosetta_backend.cc
• loop_modeling_test() : dna_dr_test.cc , dna_spec_test.cc , simple_dna_regression_test.cc
• loop_rebuilding_test() : simple_dna_regression_test.cc , dna_dr_test.cc
• LoopBuild_main() : r_build_hotspot_loops.cc
• LoopBuild_main_local() : loopmodel.cc
• LoopHash_AnalyzeCOP : loophash_analyse.cc
• LoopHash_AnalyzeOP : loophash_analyse.cc
• loophash_search() : test_LH.cc
• LoopHashRelax_SamplerCOP : loophash.cc , loophash_cenrelax.cc
• LoopHashRelax_SamplerOP : loophash.cc , loophash_cenrelax.cc
• loopness : AnchorFinder.cc
• loops_set_move_map() : loop_minimize.cc , sidechain_min.cc
• Low : Docking.bench.hh
• lowercase() : pdbstats_test.cc
• lowres_symmetric_design_cycles : zinc1_homodimer_design.cc
• lsz_ : CL.hh
• luxr_setup() : dna_spec_test.cc , simple_dna_regression_test.cc
• luxr_test() : dna_spec_test.cc , simple_dna_regression_test.cc
• LYS : gen_vdw_radius.m , load_pair_env_table.m , load_angle_r_table.m , gen_env_dep_pair_decompose.m , gen_env_dep_pair.m , gen_env_dep_orient_draw.m , gen_env_dep_orient_decompose.m , gen_env_dep_orient.m , load_pair_env_table_ref.m , load_pair_env_table.m , cal_env.m , draw_gen_env_dep_pair_decompose.m , draw_gen_env_dep_pair.m , draw_gen_env_dep_orient_decompose.m