- m -

• M : test_rose.cc , flail.cc
• M_iter : frag2profile.cc
• MakeCanonicalHelixCOP : make_canonical_helix.cc
• MakeCanonicalHelixOP : make_canonical_helix.cc
• Mat : print_dunscores.cc , gen_d2_3his_ooc.cc , pentcb_test.cc , pentcb.cc , nisod.cc , motif_hash_util.cc , motif_denovo_hb.cc , make_symmetric_task_test.cc , isct_test.cc , IKFGDB.cc , heterodock.cc , helix_assembly.cc , hczndimer.cc , genmatch_d6_bpy.cc , gen_homo_hc.cc , gen_d2_hhhc.cc , gen_d2_4his.cc , smhybrid.cc , test_kc.cc , sym_multicomp_test.cc , yeates_align.cc , willmatch_d6_bpy.cc , willmatch_chorismate.cc , willmatch_2d6_bhe.cc , will_mutalyze.cc , ward_design.cc , test_loop_hash.cc , sasa_test.cc , test_ikrs_flymake.cc , test_ikrs2.cc , test_ikrs.cc , symdock_hybrid_cc3.cc , symdock_hybrid.cc , symdock_enum_3_1.cc , sic_fast_x.hh , design_symm_no_hack_elec.cc , atom_design.cc , symdock_enum.cc , relax_building_block.cc , matdes_mutalyze.cc , matdes_dock.cc , matdes_design_2comp.cc , matdes_design.cc , enumeration_test.cc , symdock_enum_3_1.cc , design_symm_110330_good.cc , design_symm.cc , design_symm.bak.110314.cc , des_pos_ddG.cc , coiled_coil_search.cc , char_native.cc , cxdock.cc , gen_d2.cc , disulf_stat.cc , FunGroupTK_test.cc , FunGroupTK.cc , dxdock_movie.cc , dump_res.cc , dubois_graft.cc , dubois.cc , dock_asym.cc , coiled_coil.cc , designability_stats.cc , d3_bpy_linker.cc , CXdock_TMP.cc , CXdock.cc , crossmatch_d2.cc , crossmatch_3e.cc , crossmatch.cc , coiled_coil_zn.cc
• MatchAlignerOP : crossmatch.cc , crossmatch_d2.cc
• MatchBaseCOP : crossmatch_d2.cc , crossmatch.cc
• MatchBaseOP : crossmatch.cc , crossmatch_d2.cc
• Matf : sphere_hierarchy.cc , symdock_enum_3_1.cc , pentcb_design.cc , gpu_test_Mxform.cc , gpu_test.cc , gpu_score.cc , dxdock.cc , cxdock_sheet.cc , symdock_enum_3_1.cc , gpu_linker.cc , symdock_enum.cc , cxdesign.cc
• Matrix : stepwise_helix_test.cc , stepwise_centroid_test.cc , rna_test.cc , rna_protein_test.cc , rna_assemble_test.cc , rb_entropy.cc , protein_helix_assemble.cc , polar_pdbstats.cc , pdbstats_test.cc , pdbstats_rnahelix.cc , morph_pdbs.cc , stepwise_loop_test.cc , stepwise_template_test.cc , transform_loodo.cc , rna_thread.cc , rna_thread_and_minimize.cc , nucleobase_sample_around.cc , rna_database.cc , rna_features.cc , rna_graft.cc , swa_protein_main.cc , swa_rna_main.cc , swa_rna_util.cc , mg_hires_pdbstats.cc , mg_lores_pdbstats.cc , adenosine_stack_test.cc , non_natural_na.cc , swa_rna_analytical_closure.cc , turner_test_double_helix.cc , turner_two_chain.cc , cryst_reporters.hh , convert_pdb_to_silent_file.cc , parin_test.cc , phil.hh , benzene_test.cc , coarse_rna_test.cc , easy_target_test.cc , entropy_test.cc , add_delete_monte_carlo.cc , erraser_monte_carlo.cc , OLD_TRIAL_protein_helix_assemble.cc , stepwise_test.cc , TRIAL_protein_helix_assemble.cc , turner_rules_test.cc , turner_rules_test_WORKS.cc , loop_closure_test.cc , dna_test.cc
• MembraneDockingMoverOP : membrane_docking.cc
• MembraneMinMoverCOP : local_minimize.cc
• MembraneMinMoverOP : local_minimize.cc
• MembraneRelaxMoverCOP : membrane_relax2.cc
• MembraneRelaxMoverOP : membrane_relax.cc , membrane_relax2.cc
• MembraneSampleMoverCOP : membrane_sampling.cc
• MembraneSampleMoverOP : membrane_sampling.cc
• MembraneSfxnMoverOP : membrane_fa_scorefxn.cc , membrane_scorefxn.cc
• MembraneTransformMoverCOP : transform_into_mem.cc , translate_membrane_pose.cc
• MembraneTransformMoverOP : transform_into_mem.cc , translate_membrane_pose.cc
• MembraneViewMoverCOP : check_rotation.cc , translate_view_membrane.cc , pymol_viewer_test.cc , visualize_membrane.cc
• MembraneViewMoverOP : check_rotation.cc , pymol_viewer_test.cc , visualize_membrane.cc , translate_view_membrane.cc
• memory_buffer : format.h
• MetalSiteFinderMoverCOP : metal_site_finder.cc
• MetalSiteFinderMoverOP : metal_site_finder.cc
• MikeLinkerMoverCOP : mike_linker_test.cc
• MikeLinkerMoverOP : mike_linker_test.cc
• MinCenrotMoverOP : cenrot_jd2.cc
• MinimizerBenchmark_dfpmin : Minimizer.bench.hh
• MinimizerBenchmark_dfpmin_armijo : Minimizer.bench.hh
• MinimizerBenchmark_dfpmin_armijo_nonmonotone : Minimizer.bench.hh
• MinToolMoverCOP : r_min_check.cc
• MinToolMoverOP : r_min_check.cc
• ModuleGetter : T32.call_guard.ref.cpp , T33.buffer_protocol.ref.cpp , T40.stl.ref.cpp , T42.stl.names.map.ref.cpp , T42.stl.names.multi.ref.cpp , T42.stl.names.multimap.ref.cpp , T42.stl.names.multiset.ref.cpp , T42.stl.names.ref.cpp , T42.stl.names.set.ref.cpp , T43.stl.pybind11_include_stl.ref.cpp , T50.add_on_binder.ref.cpp , T50.namespace_binder.ref.cpp , T60.custom_shared.ref.cpp , T60.pybind11.ref.cpp , T70.module_local.ref.cpp , T70.options.ref.cpp , T71.module_local.ref.cpp , T02.function.ref.cpp , T80.custom_trampoline.ref.cpp , T81.custom_trampoline_with_args.ref.cpp , T11.override.ref.cpp , T31.include_for_class.ref.cpp , T00.basic.ref.cpp , T01.enum.ref.cpp , T05.default.ref.cpp , T07.class.match_args.ref.cpp , T07.class.ref.cpp , T08.constructor.ref.cpp , T09.overload.ref.cpp , T10.inheritance.ref.cpp , T10.virtual_inheritance.ref.cpp , T12.insertion_operator.ref.cpp , T12.operator.ref.cpp , T15.copy.ref.cpp , T15.inner_class.fwd.ref.cpp , T15.inner_class.ref.cpp , T17.anonymous.ref.cpp , T20.template.ref.cpp , T20.template.variadic.ref.cpp , T30.include.ref.cpp
• Motif : motif_scan.cc
• MotifColumn : motif_scan.cc
• MotifDockOP : motif_dock.cc
• MPDomainAssemblyOP : mp_domain_assembly.cc
• MPFindInterfaceTestMoverOP : mp_find_interface_test.cc
• MPFoldingMoverOP : mpfolding.cc
• MPframeworkTest1MoverOP : mpframework_test1.cc
• MPframeworkTestMoverOP : mpframework_test.cc
• MPInterfaceStatisticsOP : interface_statistics.cc
• MPLipidAccessibilityOP : mp_lipid_acc.cc
• MPScoreFunctionFingerprintMoverOP : version_mpscorefxn.cc
• mtransferaseOP : mtransferase.cc
• mutations : cartesian_ddg.cc , ddg_monomer.cc
• my_shared_ptr : T60.custom_shared.hpp , T61.smart_holder.hpp
• MyAppCOP : features_reporter.cc
• MyAppOP : features_reporter.cc
• MyFeaturesReporterCOP : features_reporter.cc
• MyFeaturesReporterOP : features_reporter.cc