Here is a list of all file members with links to the files they belong to:

- u -

• UATOM : unique_atoms.h , gpu_homog_atom_coords.h
• UBQ_E2MoverOP : UBQ_E2_thioester.cc , UBQ_UBQ_E2.cc
• UBQ_GTPase_disulfide_MoverOP : UBQ_Gp_CYD-CYD.cc
• UBQpdb : UBQ_UBQ_E2.cc
• uint32_t : types.hh
• UINT64_C : mt19937.hh
• uint64_t : types.hh
• uint8 : gpu_linker.cc , gpu_mat_vec.hh , gpu_score.cc , gpu_test.cc , gpu_test_Mxform.cc
• uintptr_t : types.hh
• unbound_protein_minimization() : rnp_ddg.cc
• uniforms : test_leerichards.cc
• unsatisfied_buried_polars() : cryst_reporters.hh
• UNUSED_ATTR : cxx_versioning_macros.hh
• unvirtualize_phosphates() : rna_graft.cc
• up_jump_tree() : smhybrid.cc
• update_atom_positions() : make_retroinverso.cc
• update_backbone() : turner_two_chain.cc
• update_bicelle_radius() : mp_optimize_geometry_params.cc
• update_constraints() : minimization_test.cc , msd.cc
• update_double_vesicle() : mp_optimize_geometry_params.cc
• update_nucleoside() : turner_two_chain.cc
• update_system() : turner_test_double_helix.cc
• update_torsion_set() : lariat_modeling.cc
• update_vesicle_radius() : mp_optimize_geometry_params.cc
• updateSSAtoms() : CycDsulf.cc
• usage() : rotamerize_disulfides.cc , convert.cc , disulfide_scorer.cc , disulfide_handoff.cc , disulfide_filter.cc , disulfide_finder.cc , conserve_disulfides.cc , create_disulf_file.cc
• usage_string : sequencerecovery.cc , analyze_ddG.cc , find_position_matches_using_inverse_rotamers.cc , rss_energy_calculator.cc , surfacescore.cc , sequence_recovery.cc , mp_seqrecov.cc , remodel.cc
• use_backrub() : call_mover.cc
• use_in_rmsd() : make_a3b_bundle.cc , bettercluster.cc , design_cycpeptide_MPI.cc , make_betahelicalbundle.cc , make_helicalbundle.cc , cluster_cyc_disulf.cc
• use_in_rmsd_offset() : bettercluster.cc
• use_jobname : InterfaceAnalyzer.cc
• use_regular_sasa_calc : BuriedUnsatPolarsFinder2.cc
• use_resfile : InterfaceAnalyzer.cc
• use_varsoldist_sasa_calc : xtal_water_bunsat.cc , BuriedUnsatPolarsFinder2.cc , khXtal_water_bunsat.cc , sasa_buns.cc , wat_distances.cc
• user_fixable_issue_assert : exit.hh
• user_fixable_issue_exit : exit.hh
• user_overwrites_options() : mp_parameters.cc
• ushort2 : gpu_mat_vec.hh , gpu_test_Mxform.cc , gpu_test.cc , gpu_score.cc , gpu_linker.cc
• utility_exit : exit.hh
• utility_exit_with_message : exit.hh
• utility_exit_with_message_status : exit.hh
• utility_exit_with_status : exit.hh
• Ux : dxdock_movie.cc
• Uy : dxdock_movie.cc
• Uz : dxdock_movie.cc