- b -

• B_vals : SID_ERMS_prediction.cc
• backrub_iterations : detect_tight_clusters.cc
• basename : input_from_cmd.cc
• bbhbond_weight_mod : peptide_minimizer.cc
• bbmin : min_pack_min.hh
• Bcut : draw_gen_env_dep_orient_decompose.m , gen_env_dep_orient_decompose.m
• bda : smooth_2D.m
• bdb : smooth_2D.m
• begin : KeyLookup.functors.hh , KeyLookup.functors.ii
• bestoutfile : AnchorFinder.cc
• beta_length : exposed_strand_finder.cc
• BINBITS : cycgly_bbg8t3a.cc , cycgly_target.cc , cycsamp.cc
• BinderToolCategory : options.hpp
• binding_partner : concatenate_poses.cc
• BINSIZE : cycsamp.cc , cycgly_target.cc , cycgly_bbg8t3a.cc
• BLOCK_SIZE : BundlePairRmsdCalculatorGPU.cc , CompareBundleToNative.cc , SmotifPairRmsdCalculatorGPU.CC
• Blue : ColorsDemo.cc
• branch_tag : Tag.cc
• break : draw_matrix.m , gen_vdw_radius.m , gen_env_dep_pair_decompose.m , gen_env_dep_pair.m , gen_env_dep_orient_draw.m , gen_env_dep_orient_decompose.m , gen_env_dep_orient.m , draw_gen_env_dep_pair_decompose.m , draw_gen_env_dep_pair.m , draw_gen_env_dep_orient_decompose.m
• breakage_cutoff : SID_ERMS_prediction.cc
• BURIED_RESIDUE_NO_HSASA_CUTOFF : hydrophobic_patch_stats_calculator.cc
• buried_threshold : detect_tight_clusters.cc