Here is a list of all namespace members with links to the namespace documentation for each member:

- h -

• H : hist2d
• h1_template() : antibody , basic::options::OptionKeys::antibody
• h2_template() : antibody , basic::options::OptionKeys::antibody
• h3_filter() : antibody , basic::options::OptionKeys::antibody
• h3_filter_tolerance() : antibody , basic::options::OptionKeys::antibody
• h3_loop_csts_hr() : antibody , basic::options::OptionKeys::antibody
• h3_loop_csts_lr() : antibody , basic::options::OptionKeys::antibody
• h3_no_stem_graft() : antibody , basic::options::OptionKeys::antibody
• h3_template() : antibody , basic::options::OptionKeys::antibody
• h5py : pyrosetta.protocols.h5_importer
• h5py_is_present : pyrosetta.protocols.h5_importer
• h_mode : basic::options::OptionKeys::holes , holes
• handle_char_specs() : detail
• handle_cstring_type_spec() : detail
• handle_dynamic_spec() : detail
• handle_int_type_spec() : detail
• handle_structured_xml_error() : utility::tag
• handle_xml_error() : utility::tag
• handle_xml_warning() : utility::tag
• handles_metric_value() : basic
• harm : vancomycin
• harmonic_ca_tether : basic::options::OptionKeys::ddg , ddg
• harmonic_Calphas : basic::options::OptionKeys::docking::ligand , docking::ligand
• harmonic_torsions : basic::options::OptionKeys::docking::ligand , docking::ligand
• Haro : basic::options::OptionKeys::orbitals , orbitals
• harvest : basic::options::OptionKeys::mh::harvest , mh::harvest
• harvest_motifs : basic::options::OptionKeys::mh , mh
• harvest_motifs_min_hh_ends : basic::options::OptionKeys::mh , mh
• harvest_scores : basic::options::OptionKeys::mh , mh
• has() : ObjexxFCL
• has_any_of() : ObjexxFCL
• has_curl() : ez_setup
• has_equal_operator() : rosetta_binders
• has_fallback_formatter : detail
• has_insertion_operator() : rosetta_binders , utility::type_traits
• has_named_args_bit : detail
• has_non_ascii() : utility::options
• has_permission() : ui::task
• has_pore : basic::options::OptionKeys::mp::lipids , mp::lipids
• has_powershell() : ez_setup
• has_prefix() : ObjexxFCL
• has_suffix() : ObjexxFCL
• has_value() : utility::json_spirit
• has_wget() : ez_setup
• hash_2D_vs_3D : basic::options::OptionKeys::sicdock , sicdock
• hash_angle_resl : basic::options::OptionKeys::mh::harvest , mh::harvest
• hash_cart_resl : basic::options::OptionKeys::mh::harvest , mh::harvest
• hash_tag_only_terminal_Es : basic::options::OptionKeys::legacy_sewing , legacy_sewing
• hashfile : basic::options::OptionKeys::hotspot , hotspot
• hb_acc_strength : basic::options::OptionKeys::score , score
• hb_bb : basic::options::OptionKeys::mh::filter , mh::filter
• hb_bb_sc : basic::options::OptionKeys::mh::filter , mh::filter
• hb_cen_soft : basic::options::OptionKeys::corrections::score , corrections::score
• hb_don_strength : basic::options::OptionKeys::score , score
• hb_exclude_ether_oxygens : basic::options::OptionKeys::corrections::score , corrections::score
• hb_fade_energy : basic::options::OptionKeys::corrections::score , corrections::score
• hb_filter : basic::options::OptionKeys::flexPepDocking , flexPepDocking
• hb_lrbb : basic::options::OptionKeys::remodel , remodel
• hb_max_energy : basic::options::OptionKeys::score , score
• hb_sc : basic::options::OptionKeys::mh::filter , mh::filter
• hb_score_cutoff : basic::options::OptionKeys::motifs , motifs
• hb_sp2_BAH180_rise : basic::options::OptionKeys::corrections::score , corrections::score
• hb_sp2_chipen : basic::options::OptionKeys::corrections::score , corrections::score
• hb_sp2_outer_width : basic::options::OptionKeys::corrections::score , corrections::score
• hb_srbb : basic::options::OptionKeys::remodel , remodel
• hb_type : plot_hb
• hbe_for_dH2O_aGEN_SP3SC_ssother : basic::options::OptionKeys::score , score
• hbnet_bonus_function_ramping : basic::options::OptionKeys::score , score
• hbnet_max_network_size : basic::options::OptionKeys::score , score
• hbond : basic::options::OptionKeys::mp::scoring , mp::scoring
• hbond_acceptor_energy_cutoff : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• hbond_bb_per_residue_energy : basic::options::OptionKeys::score , score
• Hbond_depth_correction : basic::options::OptionKeys::mp , mp
• hbond_disable_bbsc_exclusion_rule : basic::options::OptionKeys::score , score
• hbond_energy_cutoff : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• hbond_energy_shift : basic::options::OptionKeys::corrections::score , corrections::score
• hbond_entropy_threshold : basic::options::OptionKeys::hydrate , hydrate
• hbond_fade : basic::options::OptionKeys::score , score
• hbond_max_threshold : basic::options::OptionKeys::motifs , motifs
• hbond_measure_sp3acc_BAH_from_hvy : basic::options::OptionKeys::corrections::score , corrections::score
• hbond_min_threshold : basic::options::OptionKeys::motifs , motifs
• hbond_new_sp3_acc : basic::options::OptionKeys::score , score
• hbond_params : basic::options::OptionKeys::score , score
• hbond_sc_cutoff : hbscan
• hbond_set : test.T200_Scoring , test.Workshop3test
• hbond_sp2_correction : basic::options::OptionKeys::corrections , corrections
• hbond_threshold : basic::options::OptionKeys::hydrate , hydrate
• hbond_wtd_energy_cutoff : hbscan
• hbonded : benchmark_ns
• HBPDOGLW_base_class_mode : ui::ui_protocols::helical_bundle
• HBPDOGLW_drag_nonparametric_geometry : ui::ui_protocols::helical_bundle
• HBPDOGLW_end_of_list : ui::ui_protocols::helical_bundle
• HBPDOGLW_extended_drag_mode : ui::ui_protocols::helical_bundle
• HBPDOGLW_rotate_nonparametric_geometry : ui::ui_protocols::helical_bundle
• hbs_chain : a3b_hbs_creator
• hbs_design_first : a3b_hddm
• hbs_design_positions : hbs_design
• hbs_dock_design() : hbs_dock_design
• hbs_final_res : a3b_hbs_creator
• hbs_length : a3b_hbs_creator , create_a3b_hbs
• hbs_offset : a3b_hbs_creator
• hbs_position : create_a3b_hbs
• hbs_seq_position : create_a3b_hbs
• HCF : basic::options::OptionKeys::testing , testing
• HDX : basic::options::OptionKeys::in::file , in::file
• head() : ObjexxFCL
• header : dummy-distribution
• Header : make_templates
• HEADER() : utility
• heapCOP : utility
• heapOP : utility
• heat : basic::options::OptionKeys::rna::denovo , rna::denovo
• heat_convergence_check : basic::options::OptionKeys::mc , mc
• helical_bundle_predict : basic::options::OptionKeys::helical_bundle_predict , helical_bundle_predict
• helical_movement_params : basic::options::OptionKeys::RBSegmentRelax , RBSegmentRelax
• helical_omega : basic::options::OptionKeys::remodel , remodel
• helical_radius : basic::options::OptionKeys::remodel , remodel
• helical_rise : basic::options::OptionKeys::remodel , remodel
• helical_substructs : basic::options::OptionKeys::rna::denovo , rna::denovo
• helices_only : local
• helix_assignment_file : basic::options::OptionKeys::helical_bundle_predict , helical_bundle_predict
• helix_end : basic::options::OptionKeys::mp::benchmark::ideal_helix , mp::benchmark::ideal_helix
• helix_length : local
• helix_pairings : basic::options::OptionKeys::templates , templates
• helix_start : basic::options::OptionKeys::mp::benchmark::ideal_helix , mp::benchmark::ideal_helix
• help : auto-DRRAFTER_setup , auto-DRRAFTER_setup_next_round , combine_pdbs , demo.D010_Pose_structure , demo.D020_Pose_scoring , demo.D030_Fold_tree , demo.D040_Movemap , demo.D050_Packer_task , demo.D060_Folding , demo.D070_Refinement , demo.D080_Loop_modeling , demo.D090_Ala_scan , demo.D100_Docking , demo.D110_DNA_interface , demo.D120_Ligand_interface , DRRAFTER , drrafter_rna , enumerate_junctions , find_lowest_scoring_relaxed_struct , general_RNP_setup_script , get_final_ddG_scores , get_lowest_scoring_relaxed_models , pyrosetta.tests.distributed.cluster.print_discovered_test_cases , pyrosetta.tests.distributed.test_dask , relax_starting_structure , setup_for_complex_scoring_general , utility::options::OptionKeys
• help_display() : ObjexxFCL
• helper() : numeric::deriv
• heme_conformation : local
• hetatm_list : clean_pdb_keep_ligand
• hetatm_map : DRRAFTER_util
• hex_str_to_char() : utility::json_spirit
• hex_to_num() : utility::json_spirit
• hh_map : basic::options::OptionKeys::cm , cm
• HIERARCHICAL_ADD : basic
• HIERARCHICAL_ADD_ELEM_TO_CACHE : basic
• HIERARCHICAL_EVALUATE : basic
• HIERARCHICAL_FIND : basic
• HIERARCHICAL_FIND_ADDRESS : basic
• hierarchical_pool : basic::options::OptionKeys::mc , mc
• HIERARCHICAL_POOL_SIZE : basic
• HIERARCHICAL_ROUND : basic
• HIERARCHICAL_SORT_ADDRESSES : basic
• HierarchicalDataMapAP : basic::datacache
• HierarchicalDataMapCAP : basic::datacache
• HierarchicalDataMapCOP : basic::datacache
• HierarchicalDataMapOP : basic::datacache
• HIERARCHY_FIND_ADDRESS : basic
• HIERARCHY_GET_NEXT_CANDIDATE : basic
• HIERARCHY_RECV_COORDS : basic
• HIERARCHY_SEND_COORDS : basic
• HIERARCHY_SETUP_TO_RECV : basic
• high_hbond_weight_multiplier : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• high_mem_mode() : antibody::design , basic::options::OptionKeys::antibody::design
• high_min_patch : basic::options::OptionKeys::docking , docking
• high_patch : basic::options::OptionKeys::docking , docking
• high_res : basic::options::OptionKeys::carbohydrates::glycopeptide_docking , carbohydrates::glycopeptide_docking
• high_res_outer_cycles : basic::options::OptionKeys::carbohydrates::glycopeptide_docking , carbohydrates::glycopeptide_docking
• highres_conformer_filter_type : basic::options::OptionKeys::nmr::spinlabel , nmr::spinlabel
• highresdock_with_whole_score_fxn : basic::options::OptionKeys::motifs , motifs
• highresdocker_allow_minimization : basic::options::OptionKeys::motifs , motifs
• highresdocker_allow_repacking : basic::options::OptionKeys::motifs , motifs
• highresdocker_use_all_residues : basic::options::OptionKeys::motifs , motifs
• hist : 3d_histogram
• histamine : basic::options::OptionKeys::constel , constel
• histogram_max : basic::options::OptionKeys::recces , recces
• histogram_min : basic::options::OptionKeys::recces , recces
• histogram_spacing : basic::options::OptionKeys::recces , recces
• histograms : subloop_histogram
• hkdf_expand() : pyrosetta.distributed.cluster.hkdf
• hkdf_extract() : pyrosetta.distributed.cluster.hkdf
• hmac_digest() : pyrosetta.distributed.cluster.hkdf
• HOH_amp_scaling : basic::options::OptionKeys::score::occ_sol_fitted , score::occ_sol_fitted
• hokey_template_workaround() : numeric::interpolation::spline
• holes : basic::options::OptionKeys::holes , holes
• hollow() : test.Workshop9test
• homo_file : basic::options::OptionKeys::lh , lh
• homodimer : basic::options::OptionKeys::willmatch , willmatch
• homol_csts : basic::options::OptionKeys::pepspec , pepspec
• homooligomer_swap : basic::options::OptionKeys::cluster::energy_based_clustering , cluster::energy_based_clustering
• hook : execute , run_backbone , run_sidechain
• host : basic::options::OptionKeys::cloud , basic::options::OptionKeys::inout::dbms , cloud , inout::dbms
• HOSTNAME_in_jobname : basic::options::OptionKeys::jd2 , jd2
• hotspot : basic::options::OptionKeys::hotspot , hotspot
• hotspot_filter : basic::options::OptionKeys::flexPepDocking , flexPepDocking
• hotspot_hash : basic::options::OptionKeys::cluster , cluster
• HOW_copy_pitch : ui::ui_protocols::helical_bundle
• HOW_copy_value : ui::ui_protocols::helical_bundle
• HOW_end_of_list : ui::ui_protocols::helical_bundle
• HOW_end_of_update_source_list : ui::ui_protocols::helical_bundle
• HOW_set_value : ui::ui_protocols::helical_bundle
• HOW_update_from_neither : ui::ui_protocols::helical_bundle
• HOW_update_from_slider : ui::ui_protocols::helical_bundle
• HOW_update_from_spinner : ui::ui_protocols::helical_bundle
• HOW_update_source : ui::ui_protocols::helical_bundle
• HOW_widget_mode : ui::ui_protocols::helical_bundle
• HP : amino_acids
• hpcg : amino_acids
• Hpol : basic::options::OptionKeys::orbitals , orbitals
• hr_intersects_hs() : numeric::kdtree
• hrf_dynamics_input : basic::options::OptionKeys::score , score
• hrf_ms_labeling : basic::options::OptionKeys::in::file , in::file
• hs_repack_only : scaffold_matcher
• hsasa_residue_cutoff : local
• hset : test.Workshop3test
• hstarget : scaffold_matcher
• hsv_to_rgb() : numeric
• hterm2 : test.T250_Constraints
• html_context : conf
• html_sidebars : conf
• html_split_index : conf
• html_static_path : conf
• html_theme : conf
• html_theme_path : conf
• htmlhelp_basename : conf
• hxl_dist_cutoff : basic::options::OptionKeys::bunsat_calc2 , bunsat_calc2
• hybridize : basic::options::OptionKeys::cm::hybridize , cm::hybridize
• hydrate : basic::options::OptionKeys::hydrate , basic::options::OptionKeys::magnesium , hydrate , magnesium
• hydrate_all : basic::options::OptionKeys::hydrate , hydrate
• hydrophobic_polar_pattern : basic::options::OptionKeys::DenovoProteinDesign , DenovoProteinDesign
• hyfile : basic::options::OptionKeys::hydrate , hydrate
• hyper_tan() : numeric::kinematic_closure
• HyperRectangleOP : numeric::kdtree