Here is a list of all namespace members with links to the namespace documentation for each member:

- i -

• i : create_a3b_hbs , hist2d , lactamize
• I() : ObjexxFCL::format , test.T110_numeric
• i : test.T150_PyMOL_Integration , test.T650_LoopsKIC , test_terpenes , vancomycin
• i_omg_atom : create_a3b_hbs
• I_sc : basic::options::OptionKeys::evaluation , evaluation
• ia_ener : dddm
• IACHAR() : ObjexxFCL
• ICHAR() : ObjexxFCL
• icoor_05_2009 : basic::options::OptionKeys::corrections::chemical , corrections::chemical
• id_to_aa() : myspace
• idate() : ObjexxFCL
• ideal_dat_map : build_restypes
• ideal_helix : basic::options::OptionKeys::mp::benchmark::ideal_helix , mp::benchmark::ideal_helix
• ideal_sugars : basic::options::OptionKeys::score , score
• idealize : basic::options::OptionKeys::mh::harvest , basic::options::OptionKeys::relax::range , mh::harvest , oop_conformations , relax::range
• idealize_after_loop_close : basic::options::OptionKeys::loops , loops
• idealize_before_loop_close : basic::options::OptionKeys::loops , loops
• idealize_before_protocol : basic::options::OptionKeys::run , run
• idealize_final_structures : basic::options::OptionKeys::cluster , cluster
• idealize_graft_cdrs() : antibody::design , basic::options::OptionKeys::antibody::design
• idealize_rings : basic::options::OptionKeys::rings , rings
• identical_match_dis : basic::options::OptionKeys::willmatch , willmatch
• idx : kmeans_adaptive_kernel_density_bb_dependent_rotlib , kmeans_bb_dependent_rotlib , kmeans_common
• ifft() : numeric::fourier
• ifft2() : numeric::fourier
• ifft3() : numeric::fourier
• ifft3_dynamic() : numeric::fourier
• ifs : assign_charges
• ignore_default_docking_task : basic::options::OptionKeys::docking , docking
• ignore_fa_sol_at_positions : basic::options::OptionKeys::hydrate , hydrate
• ignore_full_res_output : basic::options::OptionKeys::carbohydrates::clash_check , carbohydrates::clash_check
• ignore_hydrogens : basic::options::OptionKeys::carbohydrates::clash_check , carbohydrates::clash_check
• ignore_improper_res : basic::options::OptionKeys::bbg , bbg
• ignore_io_errors : basic::options::OptionKeys::mh , mh
• ignore_ligand_chi : basic::options::OptionKeys::packing , packing
• ignore_list : basic::options::OptionKeys::tcrmodel , tcrmodel
• ignore_native_residues_in_rmsd : basic::options::OptionKeys::helical_bundle_predict , helical_bundle_predict
• ignore_prediction_residues_in_rmsd : basic::options::OptionKeys::helical_bundle_predict , helical_bundle_predict
• ignore_secstruct : basic::options::OptionKeys::rna::denovo , rna::denovo
• ignore_sequence_seperation : basic::options::OptionKeys::fold_cst , fold_cst
• ignore_terminal_ss_elements : basic::options::OptionKeys::score , score
• ignore_unrecognized_res : basic::options::OptionKeys::in , in
• ignore_waters : basic::options::OptionKeys::in , in
• ignore_zero_occupancy : basic::options::OptionKeys::run , run
• ignorechain : clean_pdb_keep_ligand
• ii : create_a3b_hbs , lactamize , oop_scan , test.T200_Scoring , test_nu_angles , torsion_scoring , vancomycin
• ile : evaluate_beta_mutants
• ile_rt : evaluate_beta_mutants
• implicit_hydrogen_radii_set : basic::options::OptionKeys::sasa , sasa
• import_motifs() : apps::pilot::frankdt
• improve_orientation : basic::options::OptionKeys::docking::ligand , docking::ligand
• in : basic::options::OptionKeys::in , in
• in_sin_cos_range() : numeric
• inc_weight : rpb
• include_ab_templates : basic::options::OptionKeys::tcrmodel , tcrmodel
• include_all_aa : basic::options::OptionKeys::mean_field , mean_field
• include_arg : local
• include_asp : local
• include_catres_in_interface_detection : basic::options::OptionKeys::enzdes , enzdes
• include_current : basic::options::OptionKeys::remodel::design , remodel::design
• include_dna_potentials : basic::options::OptionKeys::dna::design::specificity , dna::design::specificity
• include_extrashell_to_set_origin : basic::options::OptionKeys::fingerprint , fingerprint
• include_glu : local
• include_hydrogens : basic::options::OptionKeys::fingerprint , fingerprint
• include_hydrogens_explicitly : basic::options::OptionKeys::sasa , sasa
• include_intra_res_protein : basic::options::OptionKeys::optE , basic::options::OptionKeys::score , optE , score
• include_lipids : basic::options::OptionKeys::in , in
• include_loop_ss_chunks : basic::options::OptionKeys::cm::hybridize , cm::hybridize
• include_lys : local
• include_neighbor_base_stacks : basic::options::OptionKeys::score::rna , score::rna
• include_only_C_S_in_hsasa : basic::options::OptionKeys::sasa , sasa
• include_patches : basic::options::OptionKeys::chemical , chemical
• include_path : pilot_app_settings
• include_probe_radius_in_atom_radii : basic::options::OptionKeys::sasa , sasa
• include_stage5() : abinitio , basic::options::OptionKeys::abinitio
• include_sugars : basic::options::OptionKeys::in , in
• include_surfaces : basic::options::OptionKeys::in , in
• include_vrt : basic::options::OptionKeys::corrections::water , corrections::water
• include_water : basic::options::OptionKeys::packstat , packstat
• inclusion_recursion_limit : basic::options::OptionKeys::parser , parser
• increase_chainbreak : basic::options::OptionKeys::jumps , jumps
• increase_cycles() : abinitio , basic::options::OptionKeys::abinitio
• increase_vdw_radii : basic::options::OptionKeys::relax::centroid , relax::centroid
• increment : create_a3b_hbs
• indent() : binder
• indent_w_spaces() : utility::tag
• independent_cycles : basic::options::OptionKeys::remodel::RemodelLoopMover , remodel::RemodelLoopMover
• index() : ObjexxFCL
• index_sequence : detail
• indexed_coordinate_array_broadcast_rmsd() : numeric::alignment
• indexed_coordinate_array_broadcast_rmsd< numeric::Size, float >() : numeric::alignment
• indexed_coordinate_array_broadcast_rmsd< numeric::Size, numeric::Real >() : numeric::alignment
• indexed_coordinate_array_broadcast_rmsd< numeric::SSize, float >() : numeric::alignment
• indexed_coordinate_array_broadcast_rmsd< numeric::SSize, numeric::Real >() : numeric::alignment
• indexed_structure_store : basic::options::OptionKeys::indexed_structure_store , indexed_structure_store
• IndexList : numeric::kinematic_closure
• indexoffset : basic::options::OptionKeys::lh::fragpdb , lh::fragpdb
• indices : internal_coordinates , make_comparison
• indices1() : utility
• indole_coo : basic::options::OptionKeys::constel , constel
• info : basic::options::OptionKeys::parser , parser
• info1 : erraser_analysis
• info2 : erraser_analysis
• inform : basic::options
• ini_func1() : numeric::random
• ini_func2() : numeric::random
• init() : basic , pyrosetta.distributed , pyrosetta.distributed.viewer.core , pyrosetta
• init_H5FragmentStoreProvider() : pyrosetta.protocols.h5_fragment_store_provider
• init_H5StructureStoreProvider() : pyrosetta.protocols.h5_structure_store_provider
• init_named_args() : detail
• init_notebook() : pyrosetta.distributed.dask
• init_random_generators() : basic::random
• init_random_number_generators() : basic::random
• init_temp : loops , loops_kic , test.T650_LoopsKIC
• init_temp_high : demo.D080_Loop_modeling
• init_temp_low : demo.D080_Loop_modeling
• init_was_called : basic
• initial_accept() : gaussian-sampling
• initial_dist_cutoff() : abinitio::star , basic::options::OptionKeys::abinitio::star
• initial_pack() : backrub , basic::options::OptionKeys::backrub
• initial_repack : basic::options::OptionKeys::coupled_moves , basic::options::OptionKeys::ddg , coupled_moves , ddg
• initial_structures : basic::options::OptionKeys::rna::denovo , rna::denovo
• INITIALIZE : basic
• initialize() : basic::options
• initialize_data() : myspace
• INITIALIZE_HIERARCHY : basic
• initialize_rigid_body_dofs : basic::options::OptionKeys::symmetry , symmetry
• initialize_rna_tools() : erraser_util
• initialize_sturm() : numeric::kinematic_closure
• Inline_File_Provider_HookCOP : utility
• Inline_File_Provider_HookOP : utility
• inner : test_terpenes
• inner_cycle_rounds() : antibody::design , basic::options::OptionKeys::antibody::design
• inner_cycles : loops , loops_kic , test.T650_LoopsKIC
• inner_cycles_high : demo.D080_Loop_modeling
• inner_cycles_low : demo.D080_Loop_modeling
• inner_iteration_scale : basic::options::OptionKeys::flexpack::annealer , flexpack::annealer
• inner_kt() : antibody::design , basic::options::OptionKeys::antibody::design
• inner_num : dddm
• inner_product() : numeric
• inneriterations_scaling : basic::options::OptionKeys::packing , packing
• inout : basic::options::OptionKeys::inout , inout
• inp : build_restypes , cal_NBR_radius , hist2d , kmeans_adaptive_kernel_density_bb_dependent_rotlib , kmeans_bb_dependent_rotlib , kmeans_common , spectral_cluster_kmeans_adaptive_kernel_density_bb_dependent_rotlib
• inp_lig : basic::options::OptionKeys::fingerprint , fingerprint
• inpfile : build_restypes , kmeans_adaptive_kernel_density_bb_dependent_rotlib , kmeans_bb_dependent_rotlib , kmeans_common , spectral_cluster_kmeans_adaptive_kernel_density_bb_dependent_rotlib
• inplace_product() : numeric
• inplace_transpose_product() : numeric
• input : gaussian-sampling , make_static_database
• input_ab_scheme() : antibody , basic::options::OptionKeys::antibody
• input_empty_pose : basic::options::OptionKeys::jd2 , jd2
• input_etables : basic::options::OptionKeys::score , score
• input_file : basic::options::OptionKeys::nmr::pcs , basic::options::OptionKeys::nmr::pre , basic::options::OptionKeys::nmr::rdc , nmr::pcs , nmr::pre , nmr::rdc
• input_files : basic::options::OptionKeys::epr_deer , epr_deer
• input_fv() : antibody , basic::options::OptionKeys::antibody
• input_pdb : basic::options::OptionKeys::LoopModel , basic::options::OptionKeys::loops , basic::options::OptionKeys::RBSegmentRelax , LoopModel , loops , RBSegmentRelax , rna_decompose , rna_rosetta_ready_set , rna_rosetta_to_pdb
• input_res : basic::options::OptionKeys::in::file , in::file
• input_res1 : basic::options::OptionKeys::stepwise , stepwise
• input_res2 : basic::options::OptionKeys::stepwise , stepwise
• input_score_filter : basic::options::OptionKeys::cluster , cluster
• input_seq : basic::options::OptionKeys::pepspec , pepspec
• input_silent_res : basic::options::OptionKeys::rna::denovo , rna::denovo
• inputdata : make_static_database
• inputfile : hist2d
• inputfiles : cal_NBR_radius , hist2d
• ins_begin : basic::options::OptionKeys::loodo , loodo
• insert : basic::options::OptionKeys::ufv::insert , ufv::insert
• INSERT_FRAGS : basic
• insert_middle() : utility
• insert_or_ignore() : basic::database
• insert_pdb : basic::options::OptionKeys::ufv::insert , chrisk , ufv::insert
• insert_segment2_from_pdb : basic::options::OptionKeys::remodel::domainFusion , remodel::domainFusion
• insert_segment_from_pdb : basic::options::OptionKeys::remodel::domainFusion , remodel::domainFusion
• insres : clean_pdb_keep_ligand
• install_crash_handler() : utility
• install_llvm_tool() : build
• install_pybind11() : build
• int : 3d_histogram , app_runner , auto-DRRAFTER_setup , auto-DRRAFTER_setup_next_round , closure_error , correlation_time , DRRAFTER , drrafter_rna , dummy-distribution , enumerate_junctions , execute , explosion_error , gaussian-sampling , general_RNP_setup_script , get_lowest_scoring_relaxed_models , histogram , make_comparison , percent_subangstrom , pivot_selection , pyrosetta.distributed.cluster.hkdf , relax_starting_structure , run_backbone , run_sidechain , score_vs_rmsd , setup_for_complex_scoring_general
• int2afteroption() : basic::options
• int64_p : utility::json_spirit
• int_of() : ObjexxFCL
• int_type : utility::json_spirit
• intafteroption() : basic::options
• INTEGER_OPTION : utility::options
• integer_range_restriction() : utility::tag
• INTEGER_VECTOR_OPTION : utility::options
• IntegerOption : basic::options
• IntegerOptionKey : basic::options
• IntegerVectorOption : basic::options
• IntegerVectorOptionKey : basic::options
• integration_test : basic::options::OptionKeys::magnesium , basic::options::OptionKeys::stepwise::rna
• INTEGRATION_TEST : basic::options::OptionKeys::testing
• integration_test() : magnesium , stepwise::rna
• INTEGRATION_TEST() : testing
• inter_group_neighbors_cutoff : basic::options::OptionKeys::pose_metrics , pose_metrics
• inter_subsub_cst : basic::options::OptionKeys::smhybrid , smhybrid
• interaction_graph_threads : basic::options::OptionKeys::multithreading , multithreading
• interaction_shell : basic::options::OptionKeys::cryst , cryst
• interactive : basic::options::OptionKeys::run , run
• interface_cutoff : basic::options::OptionKeys::pepspec , basic::options::OptionKeys::pose_metrics , demo.D090_Ala_scan , pepspec , pose_metrics
• interface_ddg : basic::options::OptionKeys::ddg , ddg
• interface_ddG() : demo.D090_Ala_scan
• interface_dis() : antibody::design , basic::options::OptionKeys::antibody::design
• interface_distance : basic::options::OptionKeys::carbohydrates::glycopeptide_docking , carbohydrates::glycopeptide_docking
• interface_num : make_symmdef_file_denovo
• interface_only : basic::options::OptionKeys::mh::match , mh::match
• interface_packing_distance : basic::options::OptionKeys::carbohydrates::glycan_dock , carbohydrates::glycan_dock
• interface_size : basic::options::OptionKeys::willmatch , willmatch
• interfaces : make_symmdef_file_denovo
• intermediate_scorefiles : basic::options::OptionKeys::run , run
• intermediate_structures : basic::options::OptionKeys::run , run
• intermedrelax : basic::options::OptionKeys::loops , loops
• intermolecular_frequency : basic::options::OptionKeys::stepwise::monte_carlo , stepwise::monte_carlo
• interpolate_2d_func_of_angles() : basic
• interpolate_bilinear() : basic
• interpolate_bilinear_by_value() : basic
• interpolate_get_angle_bins() : basic
• interpolate_trilinear() : basic
• interpolate_trilinear_by_value() : basic
• interpolated() : numeric::interpolation , numeric::interpolation::periodic_range::full , numeric::interpolation::periodic_range::half
• interpolated_delta() : numeric::interpolation
• interpolation : 3d_histogram , hist2d , plot
• InterpolatorCOP : numeric::interpolation::spline
• InterpolatorOP : numeric::interpolation::spline
• interval : basic::options::OptionKeys::ms::checkpoint , ms::checkpoint
• interval_data_dump : basic::options::OptionKeys::canonical_sampling::sampling , canonical_sampling::sampling
• interval_pose_dump : basic::options::OptionKeys::canonical_sampling::sampling , canonical_sampling::sampling
• intf : basic::options::OptionKeys::intf , intf
• intlist : kmeans_adaptive_kernel_density_bb_dependent_rotlib , spectral_cluster_kmeans_adaptive_kernel_density_bb_dependent_rotlib
• ints_of() : ObjexxFCL
• inv_kin_lig_loop_design_filename : basic::options::OptionKeys::murphp , murphp
• inv_kT_nataa : basic::options::OptionKeys::optE , optE
• inv_kT_natrot : basic::options::OptionKeys::optE , optE
• inv_kT_natstruct : basic::options::OptionKeys::optE , optE
• invalid_motif() : apps::pilot::frankdt
• INVALID_TOKEN_TYPE : numeric::expression_parser
• inverse() : numeric
• invrate_jump_move : basic::options::OptionKeys::jumps , jumps
• Iox : PREcst , predPRE
• iphold_cen_cycles : basic::options::OptionKeys::docking::ligand , docking::ligand
• iphold_fa_cycles : basic::options::OptionKeys::docking::ligand , docking::ligand
• ir_rmsd : find_position_matches_using_inverse_rotamers
• IRange : ObjexxFCL
• Ired : PREcst , predPRE
• Irms : basic::options::OptionKeys::evaluation , evaluation
• is_1ycr : evaluate_beta_mutants
• is_any_of() : ObjexxFCL
• is_arithmetic_type() : detail
• is_ascii_letter() : detail
• is_banned_symbol() : binder
• is_base64() : utility::io
• is_beta_length : InterfaceStrandFinder
• is_big_endian() : detail
• is_bindable() : binder
• is_bindable_raw() : binder
• is_binding_requested() : binder
• is_blank() : ObjexxFCL
• is_blank_string() : ObjexxFCL::format
• is_bool() : ObjexxFCL
• is_bytes() : pyrosetta.distributed.cluster.converter_tasks
• is_callback_structure_constructible() : binder
• is_callback_structure_needed() : binder
• is_center_integer() : detail::dragonbox
• is_char() : ObjexxFCL
• is_complexes : InterfaceStrandFinder
• is_const_overload() : binder
• is_contacting() : myspace
• is_dict() : pyrosetta.distributed.cluster.converter_tasks
• is_dir_banned() : build
• is_directory() : utility::file
• is_double() : ObjexxFCL
• is_empty() : pyrosetta.distributed.cluster.converter_tasks
• is_endpoint_integer() : detail::dragonbox
• is_eq() : utility::json_spirit
• is_exposure_radius : InterfaceStrandFinder
• is_false_string() : utility
• is_fast_float : detail
• is_field_assignable() : binder
• is_finite() : utility
• is_float() : ObjexxFCL
• is_function_type() : binder
• is_homog_xform() : pyrosetta.bindings.homogeneous_transform
• is_inherited_from_enable_shared_from_this() : binder
• is_int() : ObjexxFCL
• is_integer : detail
• is_integral_type() : detail
• is_ints() : ObjexxFCL
• is_known_strands : InterfaceStrandFinder
• is_left_endpoint_integer_shorter_interval() : detail::dragonbox
• is_legal_greater_than() : numeric::kdtree
• is_legal_kdtree_below_node() : numeric::kdtree
• is_legal_less_than() : numeric::kdtree
• is_letter() : numeric::expression_parser
• is_long() : ObjexxFCL
• is_longdouble() : ObjexxFCL
• is_max_RMSD : InterfaceStrandFinder
• is_maxE : InterfaceStrandFinder
• is_mdm4 : evaluate_beta_mutants
• is_name_start() : detail
• is_negative() : detail
• is_not_ascii() : utility::options
• is_number() : auto-DRRAFTER_setup_next_round
• is_numeral() : numeric::expression_parser
• is_overloadable() : binder
• is_packed() : pyrosetta.distributed.cluster.converter_tasks
• is_python_builtin() : binder
• is_short() : ObjexxFCL
• is_signed : detail
• is_skipping_requested() : binder
• is_std_function_bindable() : binder
• is_string() : ObjexxFCL
• is_string_numeric() : utility
• is_supported_floating_point() : detail
• is_true_string() : utility
• is_type() : ObjexxFCL
• is_type< char >() : ObjexxFCL
• is_type< std::string >() : ObjexxFCL
• is_uint() : ObjexxFCL
• is_ulong() : ObjexxFCL
• is_undefined() : utility
• is_unicode() : detail
• is_unpacked_bit : detail
• is_ushort() : ObjexxFCL
• is_vector_length : InterfaceStrandFinder
• is_whitespace() : ObjexxFCL
• isfinite() : detail , utility
• isinf() : utility
• isnan() : detail , utility
• isomaltose : test.C001_Carbohydrates_Demo01
• iss : test.T008_Serialization
• iterate() : pyrosetta.distributed.cluster.tools
• iterate_reset : basic::options::OptionKeys::rdc , rdc
• iterate_tol : basic::options::OptionKeys::rdc , rdc
• iterate_weights : basic::options::OptionKeys::rdc , rdc
• iterations : autocorrelation , basic::options::OptionKeys::ddg , ddg , score_vs_time , torsion_vs_time
• iterator : subloop_histogram
• iterator_t : detail
• itime() : ObjexxFCL