Here is a list of all namespace members with links to the namespace documentation for each member:

- k -

• k : create_a3b_hbs
• K : PREcst , predPRE
• K0 : kmeans_bb_dependent_rotlib
• K_deque_level : basic::options::OptionKeys::cluster , cluster
• K_deque_size : basic::options::OptionKeys::cluster , cluster
• K_level : basic::options::OptionKeys::cluster , cluster
• k_medoids : basic::options::OptionKeys::make_rot_lib , make_rot_lib
• K_n_cluster : basic::options::OptionKeys::cluster , cluster
• K_n_sub : basic::options::OptionKeys::cluster , cluster
• K_not_fit_xyz : basic::options::OptionKeys::cluster , cluster
• K_radius : basic::options::OptionKeys::cluster , cluster
• K_redundant : basic::options::OptionKeys::cluster , cluster
• K_save_headers : basic::options::OptionKeys::cluster , cluster
• K_style : basic::options::OptionKeys::cluster , cluster
• kappa : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• kappa_i : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• kappa_lst : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• kappa_scale : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• kcluster : basic::options::OptionKeys::cmiles::kcluster , cmiles::kcluster
• kDa : PREcst , predPRE
• KDNodeCOP : numeric::kdtree
• KDNodeOP : numeric::kdtree
• KDPointCOP : numeric::kdtree
• KDPointOP : numeric::kdtree
• KDTREE_CONSTRUCT : basic
• KDTREE_SEARCH : basic
• KDTreeCOP : numeric::kdtree
• KDTreeOP : numeric::kdtree
• keep_all_checkpoints : basic::options::OptionKeys::jd3 , jd3
• keep_all_protocol : basic::options::OptionKeys::frags , frags
• keep_cdr() : protocols::antibody
• keep_checkpoint : basic::options::OptionKeys::jd3 , jd3
• keep_history : a3b_hddm , oddm , scaffold_matcher , tddm , test.T150_PyMOL_Integration
• keep_input_protonation_state : basic::options::OptionKeys::pH , pH
• keep_input_scores : basic::options::OptionKeys::in::file , in::file
• keep_junction_torsions : basic::options::OptionKeys::ufv , ufv
• keep_ligand : clean_pdb_keep_ligand
• keep_model_residues : basic::options::OptionKeys::legacy_sewing , legacy_sewing
• keep_motif_xtal_location : basic::options::OptionKeys::motifs , motifs
• keep_natro : basic::options::OptionKeys::loops , loops
• keep_non_buried_waters : basic::options::OptionKeys::hydrate , hydrate
• keep_pymol_simulation_history : basic::options::OptionKeys::run , run
• keep_skipped_csts : basic::options::OptionKeys::fold_cst , fold_cst
• keep_source_segments : basic::options::OptionKeys::legacy_sewing , legacy_sewing
• kernel : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• key : autocorrelation , basic::options , basic::options::OptionKeys::cloud , cloud , subloop_histogram
• key_from_pivots() : subloop_histogram
• key_from_torsion() : bin_torsions
• KeyFArray1D_bool : ObjexxFCL
• KeyFArray1D_byte : ObjexxFCL
• KeyFArray1D_char : ObjexxFCL
• KeyFArray1D_double : ObjexxFCL
• KeyFArray1D_float : ObjexxFCL
• KeyFArray1D_Fstring : ObjexxFCL
• KeyFArray1D_int : ObjexxFCL
• KeyFArray1D_long : ObjexxFCL
• KeyFArray1D_longdouble : ObjexxFCL
• KeyFArray1D_sbyte : ObjexxFCL
• KeyFArray1D_schar : ObjexxFCL
• KeyFArray1D_short : ObjexxFCL
• KeyFArray1D_size : ObjexxFCL
• KeyFArray1D_size_t : ObjexxFCL
• KeyFArray1D_string : ObjexxFCL
• KeyFArray1D_ubyte : ObjexxFCL
• KeyFArray1D_uchar : ObjexxFCL
• KeyFArray1D_uint : ObjexxFCL
• KeyFArray1D_ulong : ObjexxFCL
• KeyFArray1D_ushort : ObjexxFCL
• KeyFArray2D_bool : ObjexxFCL
• KeyFArray2D_byte : ObjexxFCL
• KeyFArray2D_char : ObjexxFCL
• KeyFArray2D_double : ObjexxFCL
• KeyFArray2D_float : ObjexxFCL
• KeyFArray2D_Fstring : ObjexxFCL
• KeyFArray2D_int : ObjexxFCL
• KeyFArray2D_long : ObjexxFCL
• KeyFArray2D_longdouble : ObjexxFCL
• KeyFArray2D_sbyte : ObjexxFCL
• KeyFArray2D_schar : ObjexxFCL
• KeyFArray2D_short : ObjexxFCL
• KeyFArray2D_size : ObjexxFCL
• KeyFArray2D_size_t : ObjexxFCL
• KeyFArray2D_string : ObjexxFCL
• KeyFArray2D_ubyte : ObjexxFCL
• KeyFArray2D_uchar : ObjexxFCL
• KeyFArray2D_uint : ObjexxFCL
• KeyFArray2D_ulong : ObjexxFCL
• KeyFArray2D_ushort : ObjexxFCL
• KeyFArray3D_bool : ObjexxFCL
• KeyFArray3D_byte : ObjexxFCL
• KeyFArray3D_char : ObjexxFCL
• KeyFArray3D_double : ObjexxFCL
• KeyFArray3D_float : ObjexxFCL
• KeyFArray3D_Fstring : ObjexxFCL
• KeyFArray3D_int : ObjexxFCL
• KeyFArray3D_long : ObjexxFCL
• KeyFArray3D_longdouble : ObjexxFCL
• KeyFArray3D_sbyte : ObjexxFCL
• KeyFArray3D_schar : ObjexxFCL
• KeyFArray3D_short : ObjexxFCL
• KeyFArray3D_size : ObjexxFCL
• KeyFArray3D_size_t : ObjexxFCL
• KeyFArray3D_string : ObjexxFCL
• KeyFArray3D_ubyte : ObjexxFCL
• KeyFArray3D_uchar : ObjexxFCL
• KeyFArray3D_uint : ObjexxFCL
• KeyFArray3D_ulong : ObjexxFCL
• KeyFArray3D_ushort : ObjexxFCL
• KeyFArray4D_bool : ObjexxFCL
• KeyFArray4D_byte : ObjexxFCL
• KeyFArray4D_char : ObjexxFCL
• KeyFArray4D_double : ObjexxFCL
• KeyFArray4D_float : ObjexxFCL
• KeyFArray4D_Fstring : ObjexxFCL
• KeyFArray4D_int : ObjexxFCL
• KeyFArray4D_long : ObjexxFCL
• KeyFArray4D_longdouble : ObjexxFCL
• KeyFArray4D_sbyte : ObjexxFCL
• KeyFArray4D_schar : ObjexxFCL
• KeyFArray4D_short : ObjexxFCL
• KeyFArray4D_size : ObjexxFCL
• KeyFArray4D_size_t : ObjexxFCL
• KeyFArray4D_string : ObjexxFCL
• KeyFArray4D_ubyte : ObjexxFCL
• KeyFArray4D_uchar : ObjexxFCL
• KeyFArray4D_uint : ObjexxFCL
• KeyFArray4D_ulong : ObjexxFCL
• KeyFArray4D_ushort : ObjexxFCL
• KeyFArray5D_bool : ObjexxFCL
• KeyFArray5D_byte : ObjexxFCL
• KeyFArray5D_char : ObjexxFCL
• KeyFArray5D_double : ObjexxFCL
• KeyFArray5D_float : ObjexxFCL
• KeyFArray5D_Fstring : ObjexxFCL
• KeyFArray5D_int : ObjexxFCL
• KeyFArray5D_long : ObjexxFCL
• KeyFArray5D_longdouble : ObjexxFCL
• KeyFArray5D_sbyte : ObjexxFCL
• KeyFArray5D_schar : ObjexxFCL
• KeyFArray5D_short : ObjexxFCL
• KeyFArray5D_size : ObjexxFCL
• KeyFArray5D_size_t : ObjexxFCL
• KeyFArray5D_string : ObjexxFCL
• KeyFArray5D_ubyte : ObjexxFCL
• KeyFArray5D_uchar : ObjexxFCL
• KeyFArray5D_uint : ObjexxFCL
• KeyFArray5D_ulong : ObjexxFCL
• KeyFArray5D_ushort : ObjexxFCL
• KeyFArray6D_bool : ObjexxFCL
• KeyFArray6D_byte : ObjexxFCL
• KeyFArray6D_char : ObjexxFCL
• KeyFArray6D_double : ObjexxFCL
• KeyFArray6D_float : ObjexxFCL
• KeyFArray6D_Fstring : ObjexxFCL
• KeyFArray6D_int : ObjexxFCL
• KeyFArray6D_long : ObjexxFCL
• KeyFArray6D_longdouble : ObjexxFCL
• KeyFArray6D_sbyte : ObjexxFCL
• KeyFArray6D_schar : ObjexxFCL
• KeyFArray6D_short : ObjexxFCL
• KeyFArray6D_size : ObjexxFCL
• KeyFArray6D_size_t : ObjexxFCL
• KeyFArray6D_string : ObjexxFCL
• KeyFArray6D_ubyte : ObjexxFCL
• KeyFArray6D_uchar : ObjexxFCL
• KeyFArray6D_uint : ObjexxFCL
• KeyFArray6D_ulong : ObjexxFCL
• KeyFArray6D_ushort : ObjexxFCL
• keys_to_pivots : subloop_histogram
• KeyType : basic::options::OptionKeys , utility::options::OptionKeys
• kf_bfly2() : numeric::fourier
• kf_bfly3() : numeric::fourier
• kf_bfly4() : numeric::fourier
• kf_bfly5() : numeric::fourier
• kf_bfly_generic() : numeric::fourier
• kf_cexp() : numeric::fourier
• kf_factor() : numeric::fourier
• kf_work() : numeric::fourier
• kic_bump_overlap_factor : basic::options::OptionKeys::loops , loops
• kic_end : loops_kic , pivot_selection , test.T650_LoopsKIC
• kic_ends : pivot_selection
• kic_leave_centroid_after_initial_closure : basic::options::OptionKeys::loops , loops
• kic_loop_sampling : basic::options::OptionKeys::enzdes , enzdes
• kic_loop_size : basic::options::OptionKeys::coupled_moves , coupled_moves
• kic_max_seglen : basic::options::OptionKeys::loops , loops
• kic_middle : loops_kic , test.T650_LoopsKIC
• kic_min_after_repack : basic::options::OptionKeys::loops , loops
• kic_mover : loops_kic , test.T650_LoopsKIC , test.Workshop8test
• kic_num_rotamer_trials : basic::options::OptionKeys::loops , loops
• kic_omega_sampling : basic::options::OptionKeys::loops , loops
• kic_perturb : test.Workshop8test
• kic_perturber : basic::options::OptionKeys::coupled_moves , coupled_moves
• kic_rama2b : basic::options::OptionKeys::loops , loops
• kic_recover_last : basic::options::OptionKeys::loops , loops
• kic_refine : test.Workshop8test
• kic_start : loops_kic , pivot_selection , test.T650_LoopsKIC
• kic_starts : pivot_selection
• kic_use_linear_chainbreak : basic::options::OptionKeys::loops , loops
• kic_with_cartmin : basic::options::OptionKeys::loops , loops
• kick_relax : basic::options::OptionKeys::docking , docking
• KicSandboxCOP : apps::pilot
• KicSandboxOP : apps::pilot
• kill_hairpins() : abinitio , basic::options::OptionKeys::abinitio
• kill_hairpins_frequency() : abinitio , basic::options::OptionKeys::abinitio
• kinematic_wrapper_cycles : basic::options::OptionKeys::loops , loops
• kiss_dct() : numeric::fourier
• kiss_dct_cfg : numeric::fourier
• kiss_fft() : numeric::fourier
• kiss_fft_cfg : numeric::fourier
• kiss_fft_cleanup() : numeric::fourier
• kiss_fft_cpx : numeric::fourier
• kiss_fft_next_fast_size() : numeric::fourier
• kiss_fft_split() : numeric::fourier
• kiss_fft_stride() : numeric::fourier
• kiss_fftnd() : numeric::fourier
• kiss_fftnd_cfg : numeric::fourier
• kiss_fftndr() : numeric::fourier
• kiss_fftndr_cfg : numeric::fourier
• kiss_fftndri() : numeric::fourier
• kiss_fftr() : numeric::fourier
• kiss_fftr_cfg : numeric::fourier
• kiss_fftr_next_fast_size_real() : numeric::fourier
• kiss_fftri() : numeric::fourier
• kiss_fftsplit_cfg : numeric::fourier
• kiss_idct() : numeric::fourier
• kl_divergence() : numeric::statistics
• known : basic::options::OptionKeys::loodo , loodo
• known_structures : basic::options::OptionKeys::mc , mc
• KnownTypes : options_class
• kphis : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• kpsis : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• krassk : basic::options::OptionKeys::krassk , krassk
• ks_test : bin_torsions
• ksr() : kmeans_adaptive_kernel_density_bb_dependent_rotlib , spectral_cluster_kmeans_adaptive_kernel_density_bb_dependent_rotlib
• kT : basic::options::OptionKeys::relax::range , demo.D060_Folding , demo.D070_Refinement , loops , loops_kic , relax::range , test.T400_Refinement , test.T650_LoopsKIC , test.T860_SubClassing_EnergyMethods , test.Workshop4test , test.Workshop5test