Here is a list of all namespace members with links to the namespace documentation for each member:

- t -

• t : basic::options::OptionKeys::in::file
• T() : docking
• t : gpu_set_args , in::file , kmeans_adaptive_kernel_density_bb_dependent_rotlib , kmeans_bb_dependent_rotlib , kmeans_common , predPRE
• T : pyrosetta.distributed.cluster.exceptions , pyrosetta.distributed.cluster.serialization , test.T007_TracerIO
• t : test.T009_Exceptions
• t0 : test.T900_distributed
• t1 : test.T900_distributed
• t_debug : basic
• t_error : basic
• t_fatal : basic
• t_info : basic
• t_trace : basic
• t_warning : basic
• TAB() : ObjexxFCL
• table : utility::options::OptionKeys::options::table
• table_exists() : basic::database
• taboo_in_fa : basic::options::OptionKeys::loops , loops
• taboo_sampling : basic::options::OptionKeys::loops , loops
• taboo_threshold : metapatch
• tag : basic::options::OptionKeys::matdes , basic::options::OptionKeys::resample , basic::options::OptionKeys::rna::denovo , basic::options::OptionKeys::rot_anl , byres_data , chrisk , extract_by_sidechain_sasa_score , hbscan , matdes , resample , rna::denovo , rot_anl , test.T009_Exceptions
• tag2string : basic
• Tag::getOption< platform::Size >() : utility::tag
• Tag::getOption< std::string >() : utility::tag
• TagAP : utility::tag
• TagCAP : utility::tag
• TagCOP : utility::tag
• tagfile : basic::options::OptionKeys::in::file , in::file
• taglist : basic::options::OptionKeys::willmatch , willmatch
• TagOP : utility::tag
• TagPtr : utility::tag
• tags : basic::options::OptionKeys::in::file , extract_by_sidechain_sasa_score , in::file
• tags1 : basic::options::OptionKeys::stepwise , stepwise
• tags2 : basic::options::OptionKeys::stepwise , stepwise
• tail_mode : basic::options::OptionKeys::krassk , krassk
• tail_mode_name : basic::options::OptionKeys::krassk , krassk
• tail_output_file_name : basic::options::OptionKeys::krassk , krassk
• TailSegment : basic::options::OptionKeys::TailSegment , TailSegment
• talos_cs : basic::options::OptionKeys::in::file , in::file
• talos_phi_psi : basic::options::OptionKeys::in::file , in::file
• TAR_BLOCK_SIZE : utility::io
• target : basic::options::OptionKeys::hotspot , hotspot , pyrosetta.distributed.cluster.multiprocessing
• target_aa : basic::options::OptionKeys::motifs , motifs
• target_chain : basic::options::OptionKeys::constel , constel
• target_clash_pdb : basic::options::OptionKeys::score , score
• target_cnl : basic::options::OptionKeys::constel , constel
• target_dist : basic::options::OptionKeys::hotspot , hotspot
• target_dna_defs : basic::options::OptionKeys::motifs , motifs
• target_net_charge : local
• target_net_charge_active : local
• target_pdb : basic::options::OptionKeys::AnchoredPDBCreator
• target_res : basic::options::OptionKeys::hotspot , hotspot
• target_residues : basic::options::OptionKeys::in , in
• target_residues_contact : basic::options::OptionKeys::motifs , motifs
• target_residues_sf : basic::options::OptionKeys::motifs , motifs
• target_xyz : basic::options::OptionKeys::rna::denovo::out , rna::denovo::out
• targetdir : basic::options::OptionKeys::evolution , evolution
• task : test.G200_Module_Region , vancomycin
• task2 : vancomycin
• task_api_url() : ui::task
• task_design : test.T500_Packing , test.Workshop6test
• task_operation_name_pattern() : utility::tag
• task_operations : basic::options::OptionKeys::task_operations , task_operations
• task_pack : loops , loops_kic , test.T500_Packing , test.T650_LoopsKIC , test.Workshop6test
• TaskCSP : ui::task
• TaskQP : ui::task
• tasks : make_templates
• TaskSP : ui::task
• TaskSyncer_NodeStrategyCSP : ui::task
• TaskSyncer_NodeStrategyQP : ui::task
• TaskSyncer_NodeStrategySP : ui::task
• TaskWP : ui::task
• tauc : PREcst , predPRE
• TBMB_constraints_energy_filter_multiplier : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• TBMB_positions : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• TBMB_sidechain_distance_filter_multiplier : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• tcp_client_main() : PyMOL-Rosetta-relay-client
• tcp_main() : pyrosetta.network.rosetta_udp_to_tcp_bridge
• tcr_template_db_path : basic::options::OptionKeys::tcrmodel , tcrmodel
• tcrmodel : basic::options::OptionKeys::tcrmodel , tcrmodel
• temp : erraser_analysis
• temp_file : rna_rosetta_ready_set
• temp_final : basic::options::OptionKeys::MonteCarlo , MonteCarlo
• temp_initial : basic::options::OptionKeys::MonteCarlo , MonteCarlo
• temperature() : abinitio , basic::options::OptionKeys::abinitio , basic::options::OptionKeys::ddg , basic::options::OptionKeys::docking , basic::options::OptionKeys::loops::ccd , basic::options::OptionKeys::magnesium::montecarlo , basic::options::OptionKeys::mp::lipids , basic::options::OptionKeys::remodel::RemodelLoopMover , basic::options::OptionKeys::rigid , basic::options::OptionKeys::rna::denovo , basic::options::OptionKeys::smhybrid , basic::options::OptionKeys::stepwise::monte_carlo , ddg , docking , local , loops::ccd , magnesium::montecarlo , mp::lipids , remodel::RemodelLoopMover , rigid , rna::denovo , smhybrid , stepwise::monte_carlo
• template_argument_to_string() : binder
• template_identity_cutoff : basic::options::OptionKeys::tcrmodel , tcrmodel
• template_pdb : basic::options::OptionKeys::in::file , in::file
• template_scores : basic::options::OptionKeys::cluster , cluster
• template_silent : basic::options::OptionKeys::in::file , in::file
• template_specialization() : binder
• template_structure : challenge
• templatePreset() : pyrosetta.distributed.viewer.presets
• templates : basic::options::OptionKeys::templates , templates
• templates_path : conf
• TEMPORARY_VISITED : utility::graph
• temps : basic::options::OptionKeys::recces , recces
• tensor_weight : basic::options::OptionKeys::rdc , rdc
• term_tol : chrisk
• terminal_pdb : enumerate_junctions
• terminal_res : basic::options::OptionKeys::full_model::rna , full_model::rna
• terminate_handler() : utility
• termini : basic::options::OptionKeys::mp , mp
• test() : PyMOL_demo , pyrosetta.tests , test.Workshop5test
• TEST1 : basic
• TEST2 : basic
• test2 : test.Workshop5test
• TEST3 : basic
• TEST4 : basic
• TEST5 : basic
• test_all_moves : basic::options::OptionKeys::stepwise , stepwise
• test_bbgauss() : myspace
• test_bondangle() : numeric::kinematic_closure
• test_bridgeObjects() : numeric::kinematic_closure
• test_chainParams() : numeric::kinematic_closure
• test_chainTORS() : numeric::kinematic_closure
• test_chainXYZ() : numeric::kinematic_closure
• test_cross() : numeric::kinematic_closure
• test_cycles : basic::options::OptionKeys::run , run
• test_dixon() : numeric::kinematic_closure
• test_encapsulation : basic::options::OptionKeys::stepwise , stepwise
• test_eucDistance() : numeric::kinematic_closure
• test_frame() : numeric::kinematic_closure
• test_if_schema_is_valid() : utility::tag
• test_loophash() : myspace
• test_MD() : myspace
• test_method() : test.T190_Bindings_Utility
• test_name() : self-test
• test_NMrelaxer() : myspace
• test_point_value2() : numeric::kinematic_closure
• test_polyProduct2x2() : numeric::kinematic_closure
• test_polyProduct4sq() : numeric::kinematic_closure
• test_polyProduct4x2() : numeric::kinematic_closure
• test_polyProduct4x4() : numeric::kinematic_closure
• test_polyProduct6x6() : numeric::kinematic_closure
• test_pose : create_a3b_hbs , test.T220_AtomAtomPairEnergies , test.Workshop9test
• test_property() : test.T190_Bindings_Utility
• test_recombine() : myspace
• test_relax() : myspace
• test_rotateX() : numeric::kinematic_closure
• test_score : pna
• test_scpn() : numeric::kinematic_closure
• test_sincos() : numeric::kinematic_closure
• test_suite : pyrosetta.tests.distributed.test_dask
• test_torsion() : numeric::kinematic_closure
• test_triangle() : numeric::kinematic_closure
• test_triaxialCoefficients() : numeric::kinematic_closure
• testing() : AnchoredDesign::testing , basic::options::OptionKeys::AnchoredDesign::testing , basic::options::OptionKeys::testing , testing
• tests : test.T900_distributed
• tether_jump : basic::options::OptionKeys::stepwise::rna , stepwise::rna
• tether_ligand : basic::options::OptionKeys::docking::ligand , docking::ligand
• tether_to_closest_res : basic::options::OptionKeys::magnesium , magnesium
• tetrahedral_metal_constraints_energy_filter_multiplier : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• tetrahedral_metal_positions : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• tetrahedral_metal_sidechain_distance_filter_multiplier : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• texinfo_documents : conf
• text : utility::options::OptionKeys::options::table
• tf : test.G200_Module_Region , test.T500_Packing
• tfm : evaluate_beta_mutants
• tfm_rt : evaluate_beta_mutants
• tfmb : evaluate_beta_mutants
• tfmb_rt : evaluate_beta_mutants
• tgt_amino : basic::options::OptionKeys::pose_metrics::shobuns , pose_metrics::shobuns
• tgt_atom : basic::options::OptionKeys::pose_metrics::shobuns , pose_metrics::shobuns
• tgt_res : basic::options::OptionKeys::pose_metrics::shobuns , pose_metrics::shobuns
• thermal_sampling : basic::options::OptionKeys::recces::thermal_sampling , recces::thermal_sampling
• theta_constraint_prob_cutoff : basic::options::OptionKeys::trRosetta , trRosetta
• theta_constraint_weight : basic::options::OptionKeys::trRosetta , trRosetta
• thickness : basic::options::OptionKeys::membrane , basic::options::OptionKeys::mp , basic::options::OptionKeys::mp::viewer , basic::options::OptionKeys::mp::visualize , membrane , mp , mp::viewer , mp::visualize
• thinout_factor : basic::options::OptionKeys::cluster , cluster
• third_pivot : closure_error
• this_project_include : make_bindings_via_cmake
• this_project_namespace_to_bind : make_bindings_via_cmake
• this_project_source : make_bindings_via_cmake
• thorough : basic::options::OptionKeys::relax , relax
• thousands_sep() : detail
• thousands_sep_impl() : detail
• thousands_sep_impl< char >() : detail
• thousands_sep_impl< wchar_t >() : detail
• thread_unaligned : basic::options::OptionKeys::james , james
• threads : basic::options::OptionKeys::gpu , basic::options::OptionKeys::packstat , gpu , packstat
• threads_per_worker : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• threadsc : basic::options::OptionKeys::threadsc , threadsc
• three_fold_symmetry_90_210_330 : basic::options::OptionKeys::make_rot_lib , make_rot_lib
• threshold : basic::options::OptionKeys::hotspot , hotspot , revert_app
• threshold_for_boost_closure : basic::options::OptionKeys::remodel::RemodelLoopMover , remodel::RemodelLoopMover
• throw_error() : utility::json_spirit
• throw_exception() : boost
• ticks : 3d_histogram
• tilt : basic::options::OptionKeys::docking , docking
• tilt1_center : basic::options::OptionKeys::docking , docking
• tilt2_center : basic::options::OptionKeys::docking , docking
• tilt_angle : basic::options::OptionKeys::mp::benchmark::tilt_angle , mp::benchmark::tilt_angle
• timer : basic::options::OptionKeys::loops , basic::options::OptionKeys::run , loops , run
• TimeStamp : ui::task
• timestamp() : utility
• timestamp_millis() : utility
• timestamp_millis_short() : utility
• timestamp_short() : utility
• title : correlation_time
• tm_alpha : basic::options::OptionKeys::mp::lipid_acc , mp::lipid_acc
• TM_pose_number : basic::options::OptionKeys::mp::assembly , mp::assembly
• TMA_constraints_energy_filter_multiplier : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• TMA_positions : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• TMA_sidechain_distance_filter_multiplier : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• tmp_data : enumerate_junctions
• TMprojection : basic::options::OptionKeys::mp , mp
• tn : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• to_ascii() : detail
• to_base64() : pyrosetta.distributed.packed_pose.core
• to_centroid : docking , loops , loops_kic , test.T600_Docking , test.T650_LoopsKIC
• to_decimal() : detail::dragonbox
• to_degrees() : numeric::conversions , numeric::kinematic_closure::radians
• to_dict() : pyrosetta.distributed.packed_pose.core
• to_fullatom : docking , loops , loops_kic , test.T650_LoopsKIC
• to_hex_char() : utility::json_spirit
• to_int() : pyrosetta.distributed.cluster.converter_tasks
• to_iterable() : pyrosetta.distributed.cluster.converter_tasks
• to_json() : numeric
• to_nonnegative_int() : detail
• to_output_record() : pyrosetta.distributed.io
• to_packed() : pyrosetta.distributed.cluster.converter_tasks , pyrosetta.distributed.packed_pose.core
• to_pdbstring() : pyrosetta.distributed.io , pyrosetta.io
• to_pickle() : pyrosetta.distributed.packed_pose.core
• to_pointer() : detail
• to_pose() : pyrosetta.distributed.packed_pose.core
• to_radians() : numeric::conversions , numeric::kinematic_closure::radians
• to_silent() : pyrosetta.distributed.io
• to_str() : pyrosetta.distributed.cluster.converter_tasks , utility::json_spirit
• to_string() : numeric::interpolation , utility
• to_string< char >() : utility
• to_string_view() : detail
• to_structured_array() : pyrosetta.utility.array
• to_uintptr() : detail
• to_unsigned() : detail
• to_uppercase() : numeric::expression_parser
• todo_include_todos : conf
• token_type_name() : numeric::expression_parser
• TokenCOP : numeric::expression_parser
• TokenOP : numeric::expression_parser
• TokenSetCOP : numeric::expression_parser
• TokenSetOP : numeric::expression_parser
• TokenType : numeric::expression_parser
• tol : loops_kic , test.T650_LoopsKIC
• tolerance : basic::options::OptionKeys::loops::ccd , basic::options::OptionKeys::pb_potential , loops::ccd , pb_potential
• top : test.G204_Module_ScoreAnalysis
• top_designs() : antibody::design , basic::options::OptionKeys::antibody::design
• top_label_locations : subloop_histogram
• top_labels : subloop_histogram
• top_n : metapatch
• topN : basic::options::OptionKeys::templates::cst , basic::options::OptionKeys::templates::fragsteal , templates::cst , templates::fragsteal
• topological_sort() : utility::graph
• topology_file : basic::options::OptionKeys::jumps , jumps
• topology_rank_cutoff : basic::options::OptionKeys::templates , templates
• tops : test.G204_Module_ScoreAnalysis
• tori : test_terpenes
• torsion() : internal_coordinates , make_comparison , numeric::kinematic_closure::radians , numeric::kinematic_closure
• torsion_bin_probs : basic::options::OptionKeys::in::file , in::file
• torsion_distr_params_file : basic::options::OptionKeys::score , score
• torsion_error : make_comparison
• torsion_from_key() : bin_torsions
• torsion_thresholds : basic::options::OptionKeys::james , james
• torsions : autocorrelation , internal_coordinates , torsion_vs_time
• torsionsMCM : basic::options::OptionKeys::flexPepDocking , flexPepDocking
• torval : test_terpenes
• TOTAL : basic
• total_clock : basic
• total_energies_array() : pyrosetta.bindings.energies
• total_energy_cutoff : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• total_fractions : BundlePairRmsdCalculator
• total_res : rna_decompose
• total_threads : basic::options::OptionKeys::multithreading , multithreading
• total_time : rna_rosetta_ready_set , rna_rosetta_to_pdb
• total_weight : basic::options::OptionKeys::rdc , rdc
• tr : apps::pilot::momeara
• TR : basic::database::schema_generator , basic::database
• tr : basic::datacache
• TR : basic::datacache , basic::mpi , basic::options , basic::resource_manager::locator , basic::resource_manager , basic
• tr : protocols::abinitio
• TR : protocols::loops::loop_mover::perturb , protocols::loops::loop_mover::refine , test.G000_Main_GUI
• TR_Error : basic
• TR_hh : basic::datacache
• TR_Warning : basic
• trace_protocol_exceptions() : pyrosetta.distributed.cluster.exceptions
• trace_subprocess_exceptions() : pyrosetta.distributed.cluster.exceptions
• TracerCOP : basic
• TracerImplCOP : basic
• TracerImplOP : basic
• TracerOP : basic
• TracerOptionsOP : basic
• TracerPriority : basic
• Traits : numeric::constants::d , numeric::constants::f , numeric::constants::ld , numeric::constants::r
• trajectories : correlation_time
• trajectory() : backrub , basic::options::OptionKeys::backrub , basic::options::OptionKeys::coupled_moves , coupled_moves , gaussian-sampling
• trajectory_file : basic::options::OptionKeys::coupled_moves , coupled_moves
• trajectory_gz() : backrub , basic::options::OptionKeys::backrub , basic::options::OptionKeys::coupled_moves , coupled_moves
• trajectory_path : correlation_time
• trajectory_stride() : backrub , basic::options::OptionKeys::backrub , basic::options::OptionKeys::coupled_moves , coupled_moves
• trans2 : vancomycin
• trans_mag_smooth : basic::options::OptionKeys::fold_and_dock , fold_and_dock
• trans_magnitude : basic::options::OptionKeys::enzdes , enzdes
• trans_mover : pna
• transaction_mode_from_name() : utility::sql_database
• transactionCOP : utility::sql_database
• transactionOP : utility::sql_database
• transform : basic::options::OptionKeys::mp::transform , mp::transform
• transform_into_membrane : basic::options::OptionKeys::mp::setup , mp::setup
• transform_percentile() : numeric::kdtree
• transform_percentile_single_pt() : numeric::kdtree
• transition_threshold : basic::options::OptionKeys::canonical_sampling::sampling , canonical_sampling::sampling
• translate : beta_nonlocal , pyrosetta.bindings.pose , vancomycin
• translation : basic::options::OptionKeys::rigid , demo.D100_Docking , rigid
• translation_mag : basic::options::OptionKeys::recces::base_pair , recces::base_pair
• translocation_sampling : basic::options::OptionKeys
• transpose_product() : numeric
• transpose_so3() : numeric::fourier
• transposed() : ObjexxFCL
• treat_residues_in_these_chains_as_separate_chemical_entities : basic::options::OptionKeys::in::file , in::file
• tree_based_min_pack : basic::options::OptionKeys::carbohydrates::glycan_sampler , carbohydrates::glycan_sampler
• tree_type : basic::options::OptionKeys::carbohydrates::glycopeptide_docking , carbohydrates::glycopeptide_docking
• trg_anchor : basic::options::OptionKeys::threadsc , threadsc
• trg_chain : basic::options::OptionKeys::threadsc , threadsc
• trg_first_resid : basic::options::OptionKeys::threadsc , threadsc
• trial : demo.D060_Folding , gaussian-sampling
• trial_mover : test.Workshop5test
• trial_output : demo.D090_Ala_scan
• trialmover : test.T400_Refinement , test.Workshop5test
• trials : demo.D090_Ala_scan
• triangle() : numeric::kinematic_closure::radians , numeric::kinematic_closure
• triaxialCoefficients() : numeric::kinematic_closure::radians , numeric::kinematic_closure
• triazolamer_design_first : tddm
• trigonal_planar_metal_constraints_energy_filter_multiplier : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• trigonal_planar_metal_positions : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• trigonal_planar_metal_sidechain_distance_filter_multiplier : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• trigonal_pyramidal_metal_constraints_energy_filter_multiplier : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• trigonal_pyramidal_metal_positions : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• trigonal_pyramidal_metal_sidechain_distance_filter_multiplier : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• trim : basic::options::OptionKeys::sc , binder , ObjexxFCL , utility
• trim_proportion : basic::options::OptionKeys::wum , wum
• trim_tol : chrisk
• trim_whitespace() : ObjexxFCL
• trimmed() : ObjexxFCL
• trimmed_compare() : utility
• trimmed_whitespace() : ObjexxFCL
• triple_all_res : basic::options::OptionKeys::constel , constel
• triple_target_resnum : basic::options::OptionKeys::constel , constel
• trp : evaluate_beta_mutants
• trp_min : evaluate_beta_mutants
• trp_mm : evaluate_beta_mutants
• trp_pos : evaluate_beta_mutants
• trRosetta : basic::options::OptionKeys::trRosetta , trRosetta
• True : auto-DRRAFTER_setup , auto-DRRAFTER_setup_next_round , drrafter_rna , enumerate_junctions
• true_negative : numeric
• true_positive : numeric
• truefalseoption() : basic::options
• truncate_and_serialize_xyz_vector() : numeric
• TRUNCATED_SCORE_EVALUATOR : basic
• tryParseLSMSpec() : protocols::hotspot_hashing
• tryptamine : basic::options::OptionKeys::constel , constel
• trytry_ifstream_open() : utility::file
• trytry_ofstream_open() : utility::file
• tt : basic
• tuning_param : basic::options::OptionKeys::in , in
• turn_off_rna_chem_map_during_optimize : basic::options::OptionKeys::stepwise::rna , stepwise::rna
• tweak_sxfn : basic::options::OptionKeys::docking::ligand , docking::ligand
• twin : subloop_histogram
• two : numeric::constants::d , numeric::constants::f , numeric::constants::ld , numeric::constants::r
• two_body : basic::options::OptionKeys::rotamerdump , rotamerdump
• two_chain_tree : basic::options::OptionKeys::remodel , remodel
• two_fold_symmetry_0_180 : basic::options::OptionKeys::make_rot_lib , make_rot_lib
• two_fold_symmetry_135_315 : basic::options::OptionKeys::make_rot_lib , make_rot_lib
• two_ubiquitins : basic::options::OptionKeys::chemically_conjugated_docking , chemically_conjugated_docking
• twoprime : basic::options::OptionKeys::full_model , full_model
• type : 3d_histogram , align , app_runner , auto-DRRAFTER_setup , auto-DRRAFTER_setup_next_round , autocorrelation , basic::options::OptionKeys::frags::contacts , closure_error , combine_pdbs , correlation_time , detail , DRRAFTER , drrafter_rna , dummy-distribution , enumerate_junctions , execute , explosion_error , finalize_models , find_lowest_scoring_relaxed_struct , frags::contacts , gaussian-sampling , general_RNP_setup_script , get_final_ddG_scores , get_lowest_scoring_relaxed_models , histogram , kic_runner , make_comparison
• Type : numeric::constants::d , numeric::constants::f , numeric::constants::ld , numeric::constants::r
• type : percent_subangstrom , pivot_selection , pyrosetta.tests.distributed.cluster.print_discovered_test_cases , pyrosetta.tests.distributed.test_dask , relax_starting_structure , run_backbone , run_sidechain , score_vs_rmsd , setup_for_complex_scoring_general , sign , submit_jobs
• type_of() : ObjexxFCL
• type_of< char >() : ObjexxFCL
• type_of< std::string >() : ObjexxFCL
• typename_from_type_decl() : binder