- k -

• k : create_a3b_hbs
• K : PREcst , predPRE
• K0 : kmeans_bb_dependent_rotlib
• K_deque_level : basic::options::OptionKeys::cluster
• K_deque_size : basic::options::OptionKeys::cluster
• K_level : basic::options::OptionKeys::cluster
• k_medoids : basic::options::OptionKeys::make_rot_lib
• K_n_cluster : basic::options::OptionKeys::cluster
• K_n_sub : basic::options::OptionKeys::cluster
• K_not_fit_xyz : basic::options::OptionKeys::cluster
• K_radius : basic::options::OptionKeys::cluster
• K_redundant : basic::options::OptionKeys::cluster
• K_save_headers : basic::options::OptionKeys::cluster
• K_style : basic::options::OptionKeys::cluster
• kappa : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• kappa_i : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• kappa_lst : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• kappa_scale : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• kcluster : basic::options::OptionKeys::cmiles::kcluster
• kDa : PREcst , predPRE
• keep_all_checkpoints : basic::options::OptionKeys::jd3
• keep_all_protocol : basic::options::OptionKeys::frags
• keep_checkpoint : basic::options::OptionKeys::jd3
• keep_history : a3b_hddm , oddm , scaffold_matcher , tddm , test.T150_PyMOL_Integration
• keep_input_protonation_state : basic::options::OptionKeys::pH
• keep_input_scores : basic::options::OptionKeys::in::file
• keep_junction_torsions : basic::options::OptionKeys::ufv
• keep_ligand : clean_pdb_keep_ligand
• keep_model_residues : basic::options::OptionKeys::legacy_sewing
• keep_motif_xtal_location : basic::options::OptionKeys::motifs
• keep_natro : basic::options::OptionKeys::loops
• keep_non_buried_waters : basic::options::OptionKeys::hydrate
• keep_pymol_simulation_history : basic::options::OptionKeys::run
• keep_skipped_csts : basic::options::OptionKeys::fold_cst
• keep_source_segments : basic::options::OptionKeys::legacy_sewing
• kernel : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• key : autocorrelation , basic::options::OptionKeys::cloud , subloop_histogram
• keys_to_pivots : subloop_histogram
• kic_bump_overlap_factor : basic::options::OptionKeys::loops
• kic_end : loops_kic , pivot_selection , test.T650_LoopsKIC
• kic_ends : pivot_selection
• kic_leave_centroid_after_initial_closure : basic::options::OptionKeys::loops
• kic_loop_sampling : basic::options::OptionKeys::enzdes
• kic_loop_size : basic::options::OptionKeys::coupled_moves
• kic_max_seglen : basic::options::OptionKeys::loops
• kic_middle : loops_kic , test.T650_LoopsKIC
• kic_min_after_repack : basic::options::OptionKeys::loops
• kic_mover : loops_kic , test.T650_LoopsKIC , test.Workshop8test
• kic_num_rotamer_trials : basic::options::OptionKeys::loops
• kic_omega_sampling : basic::options::OptionKeys::loops
• kic_perturb : test.Workshop8test
• kic_perturber : basic::options::OptionKeys::coupled_moves
• kic_rama2b : basic::options::OptionKeys::loops
• kic_recover_last : basic::options::OptionKeys::loops
• kic_refine : test.Workshop8test
• kic_start : loops_kic , pivot_selection , test.T650_LoopsKIC
• kic_starts : pivot_selection
• kic_use_linear_chainbreak : basic::options::OptionKeys::loops
• kic_with_cartmin : basic::options::OptionKeys::loops
• kick_relax : basic::options::OptionKeys::docking
• kill_hairpins : basic::options::OptionKeys::abinitio
• kill_hairpins_frequency : basic::options::OptionKeys::abinitio
• kinematic_wrapper_cycles : basic::options::OptionKeys::loops
• known : basic::options::OptionKeys::loodo
• known_structures : basic::options::OptionKeys::mc
• KnownTypes : options_class
• kphis : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• kpsis : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• krassk : basic::options::OptionKeys::krassk
• ks_test : bin_torsions
• kT : basic::options::OptionKeys::relax::range , demo.D060_Folding , demo.D070_Refinement , loops , loops_kic , test.T400_Refinement , test.T650_LoopsKIC , test.T860_SubClassing_EnergyMethods , test.Workshop4test , test.Workshop5test