- v -

• v : kmeans_adaptive_kernel_density_bb_dependent_rotlib , kmeans_common
• V : test.T110_numeric
• v : test.T850_SubClassing
• V01 : vancomycin
• V01_type : vancomycin
• V02 : vancomycin
• V022 : vancomycin
• V02_type : vancomycin
• V02_type2 : vancomycin
• V03 : vancomycin
• V03_type : vancomycin
• V04 : vancomycin
• V04_type : vancomycin
• v1 : oop_scan
• v2 : oop_scan
• validate_and_exit : basic::options::OptionKeys::parser
• vall : basic::options::OptionKeys::in::file
• vall_file : basic::options::OptionKeys::loops , basic::options::OptionKeys::phil
• vall_torsions : basic::options::OptionKeys::rna::denovo
• value : make_comparison , plot
• value_pH : basic::options::OptionKeys::pH
• values : test.T040_Types
• vanc2 : vancomycin
• vancomycin : vancomycin
• vang_lst : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• vang_mat : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• vanilla_helix : benchmark_ns
• vary_cutpoints : basic::options::OptionKeys::AnchoredDesign
• vary_frag_size : basic::options::OptionKeys::templates
• vary_geometry : basic::options::OptionKeys::rna
• vary_loop_length_frequency : basic::options::OptionKeys::stepwise::monte_carlo
• vary_polar_hydrogen_geometry : basic::options::OptionKeys::stepwise::polar_hydrogens
• vdih_lst : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• vdih_mat : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• vdis_lst : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• vdis_mat : kmeans_adaptive_kernel_density_bb_dependent_rotlib
• vdw : basic::options::OptionKeys::remodel
• VDW_atr_rep_screen : basic::options::OptionKeys::stepwise::rna
• vdw_delta : basic::options::OptionKeys::fast_loops
• VDW_rep_alignment_RMSD_CUTOFF : basic::options::OptionKeys::stepwise::rna
• VDW_rep_delete_matching_res : basic::options::OptionKeys::stepwise::rna
• VDW_rep_optimize_memory_usage : basic::options::OptionKeys::stepwise::rna
• VDW_rep_screen_include_sidechains : basic::options::OptionKeys::rna::denovo
• VDW_rep_screen_info : basic::options::OptionKeys::stepwise::rna
• VDW_rep_screen_physical_pose_clash_dist_cutoff : basic::options::OptionKeys::stepwise::rna
• VDW_weight : basic::options::OptionKeys::AnchoredDesign::testing
• vdw_weight_stage1 : basic::options::OptionKeys::abinitio
• vector1_string : pyrosetta
• vector_std_vector_double_std_allocator_double_t : pyrosetta
• verbose : basic::options::OptionKeys::nmr::score , basic::options::OptionKeys::rescore , basic::options::OptionKeys::sc
• VERBOSE : basic::options::OptionKeys::stepwise
• verbose : basic::options
• verbose_sampler : basic::options::OptionKeys::stepwise
• verbose_scores : basic::options::OptionKeys::stepwise::monte_carlo
• verbosity : basic::options::OptionKeys::motifs , pyrosetta.tests.distributed.cluster.skip_command_line_test , pyrosetta.tests.distributed.cluster.test_logging , pyrosetta.tests.distributed.cluster.test_reproducibility , pyrosetta.tests.distributed.cluster.test_smoke
• version : basic::options::OptionKeys::run , conf
• vesicle_radius : basic::options::OptionKeys::mp::geo
• vicinity_degree : basic::options::OptionKeys::loops
• vicinity_sampling : basic::options::OptionKeys::loops
• view : basic::options::OptionKeys::antibody::design , basic::options::OptionKeys::docking , basic::options::OptionKeys::flxbb , basic::options::OptionKeys::membrane , basic::options::OptionKeys::parser , basic::options::OptionKeys::view
• viewer : basic::options::OptionKeys::mp::viewer
• viol : basic::options::OptionKeys::constraints
• viol_level : basic::options::OptionKeys::constraints
• viol_type : basic::options::OptionKeys::constraints
• violation_skip_basis : basic::options::OptionKeys::fold_cst
• violation_skip_ignore : basic::options::OptionKeys::fold_cst
• vipReportFile : basic::options::OptionKeys::cp
• virtual_anchor : basic::options::OptionKeys::rna::denovo
• virtual_loops : challenge
• virtual_nterm : basic::options::OptionKeys::smhybrid
• virtual_res : basic::options::OptionKeys::full_model
• virtual_res_files : basic::options::OptionKeys::smhybrid
• virtual_sugar_do_minimize : basic::options::OptionKeys::stepwise::rna
• virtual_sugar_keep_base_fixed : basic::options::OptionKeys::stepwise::rna
• virtual_sugar_legacy_mode : basic::options::OptionKeys::stepwise::rna
• virtual_sugar_res : basic::options::OptionKeys::full_model
• virtualize_free_moieties_in_native : basic::options::OptionKeys::stepwise
• virtualize_packable_moieties_in_screening_pose : basic::options::OptionKeys::stepwise
• VISITED : utility::graph
• visualize : basic::options::OptionKeys::mp::visualize
• voids_penalty_energy_cone_distance_cutoff : basic::options::OptionKeys::score
• voids_penalty_energy_cone_dotproduct_cutoff : basic::options::OptionKeys::score
• voids_penalty_energy_containing_cones_cutoff : basic::options::OptionKeys::score
• voids_penalty_energy_disabled_except_during_packing : basic::options::OptionKeys::score
• voids_penalty_energy_voxel_grid_padding : basic::options::OptionKeys::score
• voids_penalty_energy_voxel_size : basic::options::OptionKeys::score
• vrt_start_num : make_symmdef_file_denovo
• vrt_stop_num : make_symmdef_file_denovo