| generate_subset_residues_to_compare(numeric::Size loop_length, numeric::Size fragment_length) | protocols::indexed_structure_store::SSHashedFragmentStore | private |
| get_fragment_coordinates(numeric::Size db_index, numeric::Size match_index) | protocols::indexed_structure_store::SSHashedFragmentStore | |
| get_fragment_length() | protocols::indexed_structure_store::SSHashedFragmentStore | |
| get_fragment_store(numeric::Size db_index) | protocols::indexed_structure_store::SSHashedFragmentStore | |
| get_fragment_store() | protocols::indexed_structure_store::SSHashedFragmentStore | |
| get_hashed_fragment_store() | protocols::indexed_structure_store::SSHashedFragmentStore | |
| get_hits_below_rms(core::pose::Pose const &pose, numeric::Size resid, numeric::Real rms_threshold, utility::vector1< std::vector< numeric::Real > > &hits_cen, utility::vector1< numeric::Real > &hits_rms, utility::vector1< std::string > &hits_aa) | protocols::indexed_structure_store::SSHashedFragmentStore | |
| get_valid_resid(core::pose::Pose const &pose, int resid) | protocols::indexed_structure_store::SSHashedFragmentStore | |
| init_SS_stub_HashedFragmentStore() | protocols::indexed_structure_store::SSHashedFragmentStore | private |
| load_prehashed_fragmentStore(std::string const &fragment_store_path) | protocols::indexed_structure_store::SSHashedFragmentStore | |
| lookback(core::pose::Pose const &pose, numeric::Size resid) | protocols::indexed_structure_store::SSHashedFragmentStore | |
| lookback(core::pose::Pose const &pose, numeric::Size resid, std::string frag_ss, bool find_closest) | protocols::indexed_structure_store::SSHashedFragmentStore | |
| lookback_account_for_dssp_inaccuracy(core::pose::Pose const &pose, numeric::Size resid, bool find_closest, numeric::Real rms_threshold) | protocols::indexed_structure_store::SSHashedFragmentStore | |
| lookback_account_for_dssp_inaccuracy(core::pose::Pose const &pose, numeric::Size resid, std::string frags_ss, bool find_closest, numeric::Real rms_threshold) | protocols::indexed_structure_store::SSHashedFragmentStore | |
| lookback_account_for_dssp_inaccuracy(core::pose::Pose const &pose, numeric::Size resid, std::string frag_ss, numeric::Real &match_rmsd, numeric::Size &match_index, numeric::Size &match_ss_index) | protocols::indexed_structure_store::SSHashedFragmentStore | |
| lookback_stub(std::vector< numeric::xyzVector< numeric::Real > > coordinates, char resTypeBeforeLoop, char resTypeAfterLoop, numeric::Size loop_length, numeric::Real &top_match_rmsd, utility::vector1< BackboneStub > &stubVector, numeric::Real stubRmsdThreshold) | protocols::indexed_structure_store::SSHashedFragmentStore | |
| max_rmsd_in_region(core::pose::Pose const &pose, utility::vector1< numeric::Size > resids) | protocols::indexed_structure_store::SSHashedFragmentStore | |
| potential_valid_ss_strings(std::string frag_ss) | protocols::indexed_structure_store::SSHashedFragmentStore | |
| set_threshold_distance(numeric::Real threshold_distance) | protocols::indexed_structure_store::SSHashedFragmentStore | |
| SS_stub_HashedFragmentStoreIndex_ | protocols::indexed_structure_store::SSHashedFragmentStore | private |
| SSHashedFragmentStore(std::string const &fragment_store_path="", std::string const &fragment_store_format="hashed", std::string const &fragment_store_compression="all") | protocols::indexed_structure_store::SSHashedFragmentStore | |
| SSHashedFragmentStore_ | protocols::indexed_structure_store::SSHashedFragmentStore | private |
