protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters Class Reference

#include <StepWiseRNA_Clusterer.hh>

Inheritance diagram for protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters:

Public Member Functions
	SlicedPoseWorkingParameters ()
	~SlicedPoseWorkingParameters () override
void	setup (protocols::stepwise::modeler::working_parameters::StepWiseWorkingParametersCOP &working_parameters)
core::pose::Pose	create_sliced_pose (core::pose::Pose const &working_pose)

Public Attributes
utility::vector1< core::Size >	sliced_pose_best_alignment
utility::vector1< core::Size >	sliced_pose_calc_rms_res
std::map< core::Size, core::Size >	sliced_pose_full_to_sub
std::map< core::Size, bool >	sliced_pose_is_prepend_map

Private Attributes
utility::vector1< bool >	is_sliced_res_
utility::vector1< core::Size >	working_to_sliced_res_map_
utility::vector1< core::Size >	sliced_to_working_res_map_
utility::vector1< std::pair< core::Size, core::Size > >	delete_res_range_list_
bool	is_setup_

Constructor & Destructor Documentation

SlicedPoseWorkingParameters()

protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters::SlicedPoseWorkingParameters ( )

inline

~SlicedPoseWorkingParameters()

protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters::~SlicedPoseWorkingParameters ( )

overridedefault

Member Function Documentation

create_sliced_pose()

core::pose::Pose protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters::create_sliced_pose

(

core::pose::Pose const &

working_pose

)

References core::pose::Pose::conformation(), core::conformation::Conformation::delete_residue_range_slow(), and core::pose::Pose::size().

setup()

void protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters::setup

(

protocols::stepwise::modeler::working_parameters::StepWiseWorkingParametersCOP &

working_parameters

)

References protocols::stepwise::modeler::rna::apply_full_to_sub_mapping(), protocols::stepwise::legacy::modeler::rna::output_is_prepend_map(), protocols::stepwise::legacy::modeler::rna::output_pair_size(), protocols::stepwise::modeler::rna::output_seq_num_list(), protocols::stepwise::modeler::rna::output_title_text(), core::pose::rna::remove_bracketed(), core::pose::full_model_info::sub_to_full(), and core::chemical::rna::TR().

Member Data Documentation

delete_res_range_list_

utility::vector1< std::pair < core::Size, core::Size > > protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters::delete_res_range_list_

private

is_setup_

bool protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters::is_setup_

private

is_sliced_res_

utility::vector1< bool > protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters::is_sliced_res_

private

sliced_pose_best_alignment

utility::vector1< core::Size > protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters::sliced_pose_best_alignment

sliced_pose_calc_rms_res

utility::vector1< core::Size > protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters::sliced_pose_calc_rms_res

sliced_pose_full_to_sub

std::map< core::Size, core::Size > protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters::sliced_pose_full_to_sub

sliced_pose_is_prepend_map

std::map< core::Size, bool > protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters::sliced_pose_is_prepend_map

sliced_to_working_res_map_

utility::vector1< core::Size > protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters::sliced_to_working_res_map_

private

working_to_sliced_res_map_

utility::vector1< core::Size > protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters::working_to_sliced_res_map_

private

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The documentation for this class was generated from the following files:

• src/protocols/stepwise/legacy/modeler/rna/StepWiseRNA_Clusterer.hh
• src/protocols/stepwise/legacy/modeler/rna/StepWiseRNA_Clusterer.cc