core::kinematics::TreeVizBuilder Struct Reference

Public Member Functions
	TreeVizBuilder (core::kinematics::FoldTree const &_ft)
void	get_ft_node_bounds (Size res, Size &out_lb, Size &out_ub)
Size	get_ft_node_lower_bound (Size res)
Size	is_single (Size res)
Size	get_ft_node_subroot (Size res)
void	expand_node_labels_partial_by_contig (std::map< Size, std::string > &node_labels_partial)
utility::vector1< std::string >	get_res_nodenames (std::map< Size, std::string > node_labels_partial)
Size	get_jump_num_to_contig_of_resi (Size resi)

Public Attributes
utility::vector1< Size >	lb_
utility::vector1< Size >	ub_
FoldTree const &	ft

Constructor & Destructor Documentation

TreeVizBuilder()

core::kinematics::TreeVizBuilder::TreeVizBuilder ( core::kinematics::FoldTree const &  _ft )

inlineexplicit

References core::kinematics::FoldTree::nres().

Member Function Documentation

expand_node_labels_partial_by_contig()

void core::kinematics::TreeVizBuilder::expand_node_labels_partial_by_contig ( std::map< Size, std::string > &  node_labels_partial )

inline

Referenced by core::kinematics::visualize_fold_tree().

get_ft_node_bounds()

void core::kinematics::TreeVizBuilder::get_ft_node_bounds ( Size  res, Size &  out_lb, Size &  out_ub  )

inline

References core::kinematics::FoldTree::cutpoint(), protocols::mean_field::max(), protocols::mean_field::min(), core::kinematics::FoldTree::nres(), and core::kinematics::FoldTree::num_cutpoint().

Referenced by core::kinematics::visualize_fold_tree().

get_ft_node_lower_bound()

Size core::kinematics::TreeVizBuilder::get_ft_node_lower_bound ( Size  res )

inline

get_ft_node_subroot()

Size core::kinematics::TreeVizBuilder::get_ft_node_subroot ( Size  res )

inline

References core::kinematics::FoldTree::downstream_jump_residue(), and core::kinematics::FoldTree::num_jump().

get_jump_num_to_contig_of_resi()

Size core::kinematics::TreeVizBuilder::get_jump_num_to_contig_of_resi ( Size  resi )

inline

References core::kinematics::FoldTree::downstream_jump_residue(), and core::kinematics::FoldTree::num_jump().

Referenced by core::kinematics::visualize_fold_tree().

get_res_nodenames()

utility::vector1<std::string> core::kinematics::TreeVizBuilder::get_res_nodenames ( std::map< Size, std::string >  node_labels_partial )

inline

References core::chemical::element::I, and core::kinematics::FoldTree::nres().

Referenced by core::kinematics::visualize_fold_tree().

is_single()

Size core::kinematics::TreeVizBuilder::is_single ( Size  res )

inline

Referenced by core::kinematics::visualize_fold_tree().

Member Data Documentation

ft

FoldTree const& core::kinematics::TreeVizBuilder::ft

lb_

utility::vector1< Size > core::kinematics::TreeVizBuilder::lb_

ub_

utility::vector1< Size > core::kinematics::TreeVizBuilder::ub_

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The documentation for this struct was generated from the following file:

• src/core/kinematics/util.cc