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protocols::drug_design::DrugPolishMover Member List

This is the complete list of members for protocols::drug_design::DrugPolishMover, including all inherited members.

add_after_chemistry(protocols::chemistries::ChemistryOP chemistry)protocols::drug_design::DrugDesignMover
add_before_chemistry(protocols::chemistries::ChemistryOP chemistry)protocols::drug_design::DrugDesignMover
add_chemistry(protocols::chemistries::ChemistryOP chemistry, core::Real weight=1.0)protocols::drug_design::DrugDesignMover
after_chemistries_protocols::drug_design::DrugDesignMoverprivate
apply(core::pose::Pose &pose) overrideprotocols::drug_design::DrugPolishMovervirtual
before_chemistries_protocols::drug_design::DrugDesignMoverprivate
bonus() constprotocols::drug_design::DrugPolishMoverinline
bonus(core::Real setting)protocols::drug_design::DrugPolishMoverinline
bonus_protocols::drug_design::DrugPolishMoverprivate
chain() constprotocols::drug_design::DrugDesignMoverinline
chain(char chain)protocols::drug_design::DrugDesignMoverinline
chain_protocols::drug_design::DrugDesignMoverprivate
check_design_position(core::pose::Pose const &pose, core::Size n)protocols::drug_design::DrugDesignMover
chemistries()protocols::drug_design::DrugDesignMoverinlineprotected
chemistries_protocols::drug_design::DrugDesignMoverprivate
chemistry_from_subtag(utility::tag::TagCOP const subtag, basic::datacache::DataMap &data) constprotocols::drug_design::DrugDesignMoverprotected
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::drug_design::DrugPolishMovervirtual
compute_scores_for_logfile(core::Real score, core::chemical::MutableResidueTypeOP restype, core::Real &raw_score, core::Real &LE_score) constprotocols::drug_design::DrugDesignMoverprotected
create()protocols::moves::Movervirtual
current_job_protocols::moves::Moverprivate
current_tag_protocols::moves::Moverprivate
debug_prefix() constprotocols::drug_design::DrugDesignMoverinline
debug_prefix(std::string const &setting)protocols::drug_design::DrugDesignMoverinline
debug_prefix_protocols::drug_design::DrugDesignMoverprivate
DrugDesignMover()protocols::drug_design::DrugDesignMover
DrugPolishMover()protocols::drug_design::DrugPolishMover
dump_molecule(core::chemical::MutableResidueType const &restype, std::string const &stage) constprotocols::drug_design::DrugDesignMoverprotected
dump_molecule(core::conformation::Residue const &residue, std::string const &stage) constprotocols::drug_design::DrugDesignMoverprotected
emplace_residue_type(core::pose::Pose &pose, core::chemical::MutableResidueTypeOP restype, core::chemical::IndexVDMapping const &index_VD_mapping)protocols::drug_design::DrugDesignMoverprotected
find_design_position(core::pose::Pose const &pose)protocols::drug_design::DrugDesignMover
find_new_res_name(std::string original_name, core::Size iteration, core::Size subiteration=0) constprotocols::drug_design::DrugDesignMoverprotected
fresh_instance() const overrideprotocols::drug_design::DrugPolishMovervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() constprotocols::moves::Mover
get_current_tag() constprotocols::moves::Moverinline
get_input_pose() constprotocols::moves::Mover
get_jobname() constprotocols::drug_design::DrugDesignMoverprotected
get_last_move_status() constprotocols::moves::Mover
get_name() const overrideprotocols::drug_design::DrugPolishMovervirtual
get_native_pose() constprotocols::moves::Mover
get_self_ptr() constprotocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() constprotocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() constprotocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() constprotocols::moves::Moverinlinevirtual
info_protocols::moves::Moverprivate
input_pose_protocols::moves::Moverprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
last_status_protocols::moves::Moverprivate
lig_efficiency_protocols::drug_design::DrugDesignMoverprivate
maxtrials() constprotocols::drug_design::DrugDesignMoverinline
maxtrials(core::Size const ntrial)protocols::drug_design::DrugDesignMoverinline
maxtrials_protocols::drug_design::DrugDesignMoverprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::drug_design::DrugDesignMoverstatic
name()protocols::moves::Moverinlinestatic
native_pose_protocols::moves::Moverprivate
output_logfile_protocols::drug_design::DrugDesignMoverprivate
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) overrideprotocols::drug_design::DrugPolishMovervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
post_process_restype(core::chemical::MutableResidueTypeOP restype, core::chemical::IndexVDMapping &index_vd_mapping, std::string const &new_name, core::pose::Pose const &pose)protocols::drug_design::DrugDesignMoverprotected
postfilter(protocols::filters::FilterOP const &setting)protocols::drug_design::DrugDesignMover
postfilter_protocols::drug_design::DrugDesignMoverprivate
pre_process_restype(core::chemical::MutableResidueTypeOP restype, core::chemical::IndexVDMapping &index_vd_mapping, core::pose::Pose const &pose)protocols::drug_design::DrugDesignMoverprotected
prefilter(protocols::filters::FilterOP const &setting)protocols::drug_design::DrugDesignMover
prefilter_protocols::drug_design::DrugDesignMoverprivate
provide_citation_info(basic::citation_manager::CitationCollectionList &) constprotocols::moves::Movervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::drug_design::DrugDesignMoverstatic
redocker() constprotocols::drug_design::DrugDesignMover
redocker(protocols::moves::MoverOP const &mover)protocols::drug_design::DrugDesignMover
redocker_protocols::drug_design::DrugDesignMoverprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() constprotocols::moves::Movervirtual
reinitialize_for_new_input() constprotocols::moves::Movervirtual
reset_status()protocols::moves::Mover
restypes_protocols::drug_design::DrugDesignMoverprivate
restypeset_protocols::drug_design::DrugDesignMoverprivate
scorer() constprotocols::drug_design::DrugDesignMover
scorer(protocols::filters::FilterOP const &scorer)protocols::drug_design::DrugDesignMover
scorer_protocols::drug_design::DrugDesignMoverprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_type(std::string const &setting)protocols::moves::Moverinline
show(std::ostream &output=std::cout) constprotocols::moves::Movervirtual
simulated_annealing_protocols::drug_design::DrugDesignMoverprivate
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
temperature() constprotocols::drug_design::DrugDesignMoverinline
temperature(core::Real const temp)protocols::drug_design::DrugDesignMoverinline
temperature_protocols::drug_design::DrugDesignMoverprivate
temperature_params_protocols::drug_design::DrugDesignMoverprivate
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() constprotocols::moves::Moverinline
type_protocols::moves::Moverprivate
weights_protocols::drug_design::DrugDesignMoverprivate
~DrugDesignMover() overrideprotocols::drug_design::DrugDesignMover
~DrugPolishMover() overrideprotocols::drug_design::DrugPolishMover
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