protocols::sparta::Sparta Class Reference

#include <Sparta.hh>

Classes
class	SpartaLib
	{ most of the original SPARTA class goes into SpartaLib – to be reused between different evaluators... More...

Public Member Functions
	Sparta (std::string const &chem_shifts)
	mini specific additions... More...
	~Sparta ()
core::Real	score_pose (core::pose::Pose const &pose)
void	check_pose (core::pose::Pose const &pose)
utility::vector1< float >	score_pose_per_residue (core::pose::Pose const &pose)
SpartaLib &	lib ()
core::Real	run_A_ANN_Prediction ()

Static Public Member Functions
static void	register_options ()

Public Attributes
GDB	REF_CS_Tab
bool	bCreateOutput_
std::string	refCSFileName

Static Public Attributes
static SpartaLib *	lib_instance_
static bool	options_registered_

Constructor & Destructor Documentation

Sparta()

protocols::sparta::Sparta::Sparta

(

std::string const &

chem_shifts

)

mini specific additions...

References lib_instance_, and refCSFileName.

~Sparta()

protocols::sparta::Sparta::~Sparta

(

)

Member Function Documentation

check_pose()

void protocols::sparta::Sparta::check_pose

(

core::pose::Pose const &

pose

)

References protocols::sparta::GDB::getData(), protocols::mean_field::min(), REF_CS_Tab, core::pose::Pose::sequence(), and protocols::sparta::tr().

Referenced by score_pose().

lib()

SpartaLib& protocols::sparta::Sparta::lib ( )

inline

References lib_instance_.

Referenced by run_A_ANN_Prediction(), score_pose(), and score_pose_per_residue().

register_options()

void protocols::sparta::Sparta::register_options ( )

static

References protocols::evaluation::options_registered_.

run_A_ANN_Prediction()

Real protocols::sparta::Sparta::run_A_ANN_Prediction

(

)

References protocols::sparta::GDB::addRemark(), bCreateOutput_, protocols::sparta::compareRef_fxn(), protocols::sparta::Sparta::SpartaLib::deallocate_arrays(), protocols::sparta::Sparta::SpartaLib::get_ANN_data(), lib(), REF_CS_Tab, refCSFileName, protocols::sparta::GDB::saveGDB(), and protocols::hybridization::score.

Referenced by score_pose().

score_pose()

Real protocols::sparta::Sparta::score_pose

(

core::pose::Pose const &

pose

)

References check_pose(), lib(), run_A_ANN_Prediction(), and protocols::sparta::Sparta::SpartaLib::setup_for_scoring().

Referenced by protocols::sparta::ChemicalShiftEvaluator::apply().

score_pose_per_residue()

utility::vector1< float > protocols::sparta::Sparta::score_pose_per_residue

(

core::pose::Pose const &

pose

)

References bCreateOutput_, protocols::sparta::calc_per_residue_scores(), protocols::sparta::Sparta::SpartaLib::deallocate_arrays(), protocols::sparta::Sparta::SpartaLib::get_ANN_data(), lib(), REF_CS_Tab, protocols::sparta::Sparta::SpartaLib::setup_for_scoring(), and core::pose::Pose::size().

Member Data Documentation

bCreateOutput_

bool protocols::sparta::Sparta::bCreateOutput_

Referenced by run_A_ANN_Prediction(), and score_pose_per_residue().

lib_instance_

Sparta::SpartaLib * protocols::sparta::Sparta::lib_instance_

static

Referenced by lib(), and Sparta().

options_registered_

bool protocols::sparta::Sparta::options_registered_

static

REF_CS_Tab

GDB protocols::sparta::Sparta::REF_CS_Tab

Referenced by check_pose(), run_A_ANN_Prediction(), and score_pose_per_residue().

refCSFileName

std::string protocols::sparta::Sparta::refCSFileName

Referenced by run_A_ANN_Prediction(), and Sparta().

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The documentation for this class was generated from the following files:

• src/protocols/sparta/Sparta.hh
• src/protocols/sparta/Sparta.cc