protocols::dna::DnaChains Class Reference

#include <DnaChains.hh>

Inheritance diagram for protocols::dna::DnaChains:

Public Member Functions
	DnaChains ()
	~DnaChains () override
	DnaChains (DnaChains const &other)
DnaChainsOP	clone () const
void	clear ()
bool	empty () const
core::Size	size () const
DnaPosition &	operator[] (core::Size resindex)
DnaPosition const &	operator[] (core::Size resindex) const
DnaPositions &	positions ()
DnaPositions const &	positions () const
DnaPositions::iterator	begin ()
DnaPositions::iterator	end ()
DnaPositions::const_iterator	begin () const
DnaPositions::const_iterator	end () const
bool	is_top (core::Size index) const
bool	contains (core::Size index) const
void	print (core::pose::Pose const &pose, std::ostream &os) const

Private Attributes
DnaPositions	positions_

Constructor & Destructor Documentation

DnaChains() [1/2]

protocols::dna::DnaChains::DnaChains

(

)

~DnaChains()

protocols::dna::DnaChains::~DnaChains ( )

overridedefault

DnaChains() [2/2]

protocols::dna::DnaChains::DnaChains

(

DnaChains const &

other

)

References positions(), and positions_.

Member Function Documentation

begin() [1/2]

DnaPositions::iterator protocols::dna::DnaChains::begin ( )

inline

References positions_.

Referenced by protocols::dna::WatsonCrickRotamerCouplings::apply().

begin() [2/2]

DnaPositions::const_iterator protocols::dna::DnaChains::begin ( ) const

inline

References positions_.

clear()

void protocols::dna::DnaChains::clear ( )

inline

References positions_.

Referenced by protocols::dna::find_basepairs().

clone()

DnaChainsOP protocols::dna::DnaChains::clone

(

)

const

contains()

bool protocols::dna::DnaChains::contains

(

core::Size

index

)

const

References is_top(), and positions_.

Referenced by protocols::dna::find_basepairs().

empty()

bool protocols::dna::DnaChains::empty ( ) const

inline

References positions_.

Referenced by protocols::dna::find_basepairs().

end() [1/2]

DnaPositions::iterator protocols::dna::DnaChains::end ( )

inline

References positions_.

Referenced by protocols::dna::WatsonCrickRotamerCouplings::apply().

end() [2/2]

DnaPositions::const_iterator protocols::dna::DnaChains::end ( ) const

inline

References positions_.

is_top()

bool protocols::dna::DnaChains::is_top ( core::Size  index ) const

inline

References positions_.

Referenced by contains().

operator[]() [1/2]

DnaPosition& protocols::dna::DnaChains::operator[] ( core::Size  resindex )

inline

References positions_.

operator[]() [2/2]

DnaPosition const& protocols::dna::DnaChains::operator[] ( core::Size  resindex ) const

inline

References positions_.

positions() [1/2]

DnaPositions& protocols::dna::DnaChains::positions ( )

inline

References positions_.

Referenced by DnaChains().

positions() [2/2]

DnaPositions const& protocols::dna::DnaChains::positions ( ) const

inline

References positions_.

print()

void protocols::dna::DnaChains::print	(	core::pose::Pose const &	pose,
		std::ostream &	os
	)		const

References protocols::dna::DnaPosition::bottom(), core::chemical::element::I, core::chemical::ResidueTypeBase::name3(), protocols::dna::DnaPosition::paired(), core::pose::Pose::pdb_info(), positions_, core::pose::Pose::residue_type(), and protocols::dna::DnaPosition::top().

Referenced by protocols::dna::find_basepairs().

size()

core::Size protocols::dna::DnaChains::size ( ) const

inline

References positions_.

Member Data Documentation

positions_

DnaPositions protocols::dna::DnaChains::positions_

private

Referenced by begin(), clear(), contains(), DnaChains(), empty(), end(), is_top(), operator[](), positions(), print(), and size().

---

The documentation for this class was generated from the following files:

• src/protocols/dna/DnaChains.hh
• src/protocols/dna/DnaChains.cc