protocols::ss_prediction::SS_predictor Class Reference

#include <SS_predictor.hh>

Inheritance diagram for protocols::ss_prediction::SS_predictor:

Public Member Functions
	SS_predictor (std::string type)
	Reads in models for SS prediction etc. More...
	~SS_predictor () override
utility::vector1< utility::vector1< core::Real > >	predict_ss (std::string fasta)

Private Member Functions
void	load_models (std::string rd1_model_fl, std::string rd2_model_fl)
std::string	get_window_aa (std::string fasta, core::SSize position)
utility::vector1< core::Real >	predict_pos_rd1 (std::string window_aa)
utility::vector1< core::Real >	predict_pos_rd2 (utility::vector1< utility::vector1< core::Real > > rd1_preds, core::SSize position, std::string fasta)
utility::vector1< utility::vector1< core::Real > >	predict_rd1 (std::string fasta)
utility::vector1< utility::vector1< core::Real > >	predict_rd2 (utility::vector1< utility::vector1< core::Real > > rd1_preds, std::string fasta)

Private Attributes
utility::libsvm::Svm_rosettaOP	rd1_model
utility::libsvm::Svm_rosettaOP	rd2_model
std::string	ss_type

Static Private Attributes
static const core::Size	WINDOW_SIZE = 15

Constructor & Destructor Documentation

SS_predictor()

protocols::ss_prediction::SS_predictor::SS_predictor

(

std::string

type

)

Reads in models for SS prediction etc.

References protocols::ss_prediction::tr().

~SS_predictor()

protocols::ss_prediction::SS_predictor::~SS_predictor ( )

overridedefault

Member Function Documentation

get_window_aa()

string protocols::ss_prediction::SS_predictor::get_window_aa ( std::string  fasta, core::SSize  position  )

private

load_models()

void protocols::ss_prediction::SS_predictor::load_models ( std::string  rd1_model_fl, std::string  rd2_model_fl  )

private

predict_pos_rd1()

vector1< Real > protocols::ss_prediction::SS_predictor::predict_pos_rd1 ( std::string  window_aa )

private

predict_pos_rd2()

vector1< Real > protocols::ss_prediction::SS_predictor::predict_pos_rd2 ( utility::vector1< utility::vector1< core::Real > >  rd1_preds, core::SSize  position, std::string  fasta  )

private

predict_rd1()

vector1< vector1< Real > > protocols::ss_prediction::SS_predictor::predict_rd1 ( std::string  fasta )

private

predict_rd2()

vector1< vector1< Real > > protocols::ss_prediction::SS_predictor::predict_rd2 ( utility::vector1< utility::vector1< core::Real > >  rd1_preds, std::string  fasta  )

private

predict_ss()

vector1< vector1< Real > > protocols::ss_prediction::SS_predictor::predict_ss

(

std::string

fasta

)

Member Data Documentation

rd1_model

utility::libsvm::Svm_rosettaOP protocols::ss_prediction::SS_predictor::rd1_model

private

rd2_model

utility::libsvm::Svm_rosettaOP protocols::ss_prediction::SS_predictor::rd2_model

private

ss_type

std::string protocols::ss_prediction::SS_predictor::ss_type

private

WINDOW_SIZE

const core::Size protocols::ss_prediction::SS_predictor::WINDOW_SIZE = 15

staticprivate

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The documentation for this class was generated from the following files:

• src/protocols/ss_prediction/SS_predictor.hh
• src/protocols/ss_prediction/SS_predictor.cc