GALigandDock.cc File Reference

#include <protocols/ligand_docking/GALigandDock/GALigandDock.hh>
#include <protocols/ligand_docking/GALigandDock/GALigandDockCreator.hh>
#include <protocols/ligand_docking/GALigandDock/GAOptimizer.hh>
#include <protocols/ligand_docking/GALigandDock/GridScorer.hh>
#include <protocols/ligand_docking/GALigandDock/util.hh>
#include <protocols/ligand_docking/GALigandDock/EntropyEstimator.hh>
#include <protocols/ligand_docking/GALigandDock/TorsionSampler.hh>
#include <protocols/ligand_docking/GALigandDock/MCSAligner.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/rms_util.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/util.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/select/util.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <core/pose/selection.hh>
#include <core/pose/util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/subpose_manipulation_util.hh>
#include <core/pack/optimizeH.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/simple_moves/ExplicitWaterMover.hh>
#include <protocols/simple_filters/BuriedUnsatHbondFilter.hh>
#include <core/scoring/constraints/Constraint.fwd.hh>
#include <core/scoring/constraints/AngleConstraint.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/constraints/DihedralConstraint.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/func/ScalarWeightedFunc.hh>
#include <core/scoring/func/TopOutFunc.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/func/CircularHarmonicFunc.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/import_pose/import_pose.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/CartesianMinimizer.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentFileOptions.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <protocols/relax/FastRelax.hh>
#include <protocols/simple_moves/DeclareBond.hh>
#include <basic/datacache/DataMap.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <utility/tag/Tag.hh>
#include <protocols/moves/mover_schemas.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyzMatrix.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/random/random.hh>
#include <numeric/random/random_permutation.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/id/AtomID.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <core/scoring/electron_density/ElectronDensity.hh>
#include <ctime>
#include <fstream>
#include <cmath>
#include <core/kinematics/Jump.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/pack/task/ResidueLevelTask.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::ligand_docking
	protocols::ligand_docking::ga_ligand_dock

Functions
static basic::Tracer	protocols::ligand_docking::ga_ligand_dock::TR ("protocols.ligand_docking.GALigandDock.GALigandDock")
std::string	protocols::ligand_docking::ga_ligand_dock::gadock_subelement_ct_name (std::string const &name)