| accomodate_length_change(Pose &pose, core::Size const insertion_begin, core::Size const seqpos) | protocols::rna::movers::RNAThreadAndMinimizeMover | |
| apply(core::pose::Pose &pose) override | protocols::rna::movers::RNAThreadAndMinimizeMover | virtual |
| class_name() | protocols::rna::movers::RNAThreadAndMinimizeMover | static |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::rna::movers::RNAThreadAndMinimizeMover | virtual |
| create() | protocols::moves::Mover | virtual |
| current_job_ | protocols::moves::Mover | private |
| current_tag_ | protocols::moves::Mover | private |
| fresh_instance() const override | protocols::rna::movers::RNAThreadAndMinimizeMover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::rna::movers::RNAThreadAndMinimizeMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| info_ | protocols::moves::Mover | private |
| input_pose_ | protocols::moves::Mover | private |
| input_sequence_type_ | protocols::rna::movers::RNAThreadAndMinimizeMover | private |
| insertion_list_ | protocols::rna::movers::RNAThreadAndMinimizeMover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| last_status_ | protocols::moves::Mover | private |
| long_mutate_strategy(core::pose::Pose &pose) | protocols::rna::movers::RNAThreadAndMinimizeMover | |
| long_strategy_ | protocols::rna::movers::RNAThreadAndMinimizeMover | private |
| mm_from_residues(core::pose::Pose const &pose, utility::vector1< core::Size > const &changed_pos, bool add_nearby=false) | protocols::rna::movers::RNAThreadAndMinimizeMover | |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mutate_all_at_once(core::pose::Pose &pose) | protocols::rna::movers::RNAThreadAndMinimizeMover | |
| mutation_list_ | protocols::rna::movers::RNAThreadAndMinimizeMover | private |
| name() | protocols::moves::Mover | inlinestatic |
| native_pose_ | protocols::moves::Mover | private |
| obtain_rtypes_for_target_sequence() | protocols::rna::movers::RNAThreadAndMinimizeMover | |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | protocols::rna::movers::RNAThreadAndMinimizeMover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| process_deletions(core::pose::Pose &pose) | protocols::rna::movers::RNAThreadAndMinimizeMover | |
| process_insertions(core::pose::Pose &pose) | protocols::rna::movers::RNAThreadAndMinimizeMover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| RNAThreadAndMinimizeMover(std::string const &seq, std::string const &template_sequence_from_alignment, bool long_strategy=false, std::string const &input_sequence_type="", std::string const &mutation_list="", std::string const &insertion_list="") | protocols::rna::movers::RNAThreadAndMinimizeMover | |
| RNAThreadAndMinimizeMover() | protocols::rna::movers::RNAThreadAndMinimizeMover | inline |
| rtypes_ | protocols::rna::movers::RNAThreadAndMinimizeMover | private |
| scorefxn_ | protocols::rna::movers::RNAThreadAndMinimizeMover | private |
| seq_ | protocols::rna::movers::RNAThreadAndMinimizeMover | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| set_up_target_sequence(core::pose::Pose &pose) | protocols::rna::movers::RNAThreadAndMinimizeMover | |
| setup_alignment_map(std::map< core::Size, core::Size > &mapping, std::string const &sequence_from_alignment) | protocols::rna::movers::RNAThreadAndMinimizeMover | inline |
| show(std::ostream &output=std::cout) const override | protocols::rna::movers::RNAThreadAndMinimizeMover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| target_sequence_ | protocols::rna::movers::RNAThreadAndMinimizeMover | private |
| template_sequence_from_alignment_ | protocols::rna::movers::RNAThreadAndMinimizeMover | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| type_ | protocols::moves::Mover | private |
| working_res_ | protocols::rna::movers::RNAThreadAndMinimizeMover | private |
| ~RNAThreadAndMinimizeMover() override | protocols::rna::movers::RNAThreadAndMinimizeMover | inline |
